DY262791

Overview
NameDY262791
Unique NameDY262791
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1166
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY262791 vs. ExPASy Swiss-Prot
Match: ELP4_XENLA (Elongator complex protein 4 OS=Xenopus laevis GN=elp4 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 6.344e-11
Identity = 38/113 (33.63%), Postives = 67/113 (59.29%), Query Frame = 2 
Query:  338 NGTMFVSSGIADLDRYFEILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHGQPLLYASPSKDPRGFLGTLPSPAS----LKHDKSRDRES-----EQEKGLRIAWQYK 649
            NG + VS+G+  LD    ILGGG  +G+L+++ ED    +  LLL+ F+++G+V G  +  AS + DP   L  LPSP +     ++D  R +++     + ++ ++IAW+Y+
Sbjct:   42 NGQLLVSTGVPSLDH---ILGGGLAVGTLLLIEEDTYGTYSHLLLKYFLAEGVVSGHEVFVASANDDPTETLQDLPSPLTDEVPRQNDPKRTKDTSGPADDSQEMMKIAWRYQ 151
[Close]
BLAST of DY262791 vs. ExPASy Swiss-Prot
Match: ELP4_DICDI (Probable elongator complex protein 4 OS=Dictyostelium discoideum GN=elp4 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 8.286e-11
Identity = 45/166 (27.11%), Postives = 82/166 (49.40%), Query Frame = 2 
Query:  236 VDAAMATTKPRLSSFSRNLSAVSSSQTPGVKCGPNG--------TMFVSSGIADLDRYFEILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHGQPLLYAS-PSKDPRGFLGTLPSPASLKHDKSRDR----------------ESEQEKGLRIAWQYKKYM 658
            V   + TT    S  + N S  +++ T   K  PNG         +  S+G+ DLD   +I+GGG P+GS++M+ ED  + ++M LL+ F+++G++  Q + ++S    DP   L  LP+  + + +   D+                  +    L+IAW+Y++Y+
Sbjct:   14 VAGGVKTTTTGSSLPTNNTSTTTTTTTTAAKKLPNGCKISIKNSNLLTSTGLTDLD---DIIGGGIPIGSILMIEEDINSSYYMFLLKYFLAEGVLQQQGVFFSSLIGIDPFEILNKLPARITKEEEIEADKNDTTNNINTNINTNNNNKQPTDELKIAWRYQQYV 176
The following BLAST results are available for this feature:
BLAST of DY262791 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ELP4_XENLA6.344e-1133.63Elongator complex protein 4 OS=Xenopus laevis GN=e... [more]
ELP4_DICDI8.286e-1127.11Probable elongator complex protein 4 OS=Dictyostel... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA100DH03RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262791 ID=DY262791; Name=DY262791; organism=Citrus clementina; type=EST; length=1166bp
CCAAACCCCACATAAAAAAGAAGTCCCCTGTGTGTTTGGCCGCCCGCCGC
AGCTACCCATCACCAAAATAATCCGGCTCTCCGCCGCACTACTCGCTTGT
CACCGGCGCCGCTCGACGCCAACTGCTGCTCTATCACTCCCGCCCCGTGT
CTGCTCTTTGCCGCCTGAATCATTAAGCTGCAGATTGTCAACCATTTACT
CTTGGCATTTTACAGGCAAGACAAAGCTGTGTTCTGTTGATGCTGCCATG
GCAACAACTAAGCCTCGGCTAAGCAGCTTCTCTCGCAACCTATCAGCTGT
ATCCTCGTCTCAAACCCCTGGAGTCAAATGTGGTCCTAATGGAACTATGT
TTGTTTCATCTGGGATAGCTGATCTTGACAGATATTTCGAGATACTTGGT
GGTGGGTTCCCTTTAGGAAGTCTTGTGATGGTGATGGAAGATGCAGAAGC
ACCTCATCACATGCTTTTGTTAAGGAATTTTATGTCACAAGGGCTTGTTC
ACGGCCAACCTCTTCTTTACGCCAGTCCATCCAAGGACCCCAGAGGTTTT
TTGGGTACTTTGCCTAGTCCTGCCTCTCTGAAACATGATAAATCTCGTGA
TCGGGAATCAGAACAGGAAAAGGGATTGAGGATAGCTTGGCAGTACAAGA
AGTATATGGGTGAAAATCAACCAAACTTTGATAGCCACAGAGAAATGACG
GCAGCAGTGCATTGGCTGGTCGTATAGCTATTCAGTCATTATGTGCTCCA
CAATGTGAACATTCCAACATGGTCAGTGGCAATTACACTTTGCTCTGAAG
GTCGTAATCACCTTAAACGATTGGGAAATGCTTTCTTTTATTACATCTCT
GAAAGGTATGGTGCGGTCTTCAAATGCAGTGGTTGTTATAAACTTTCCGC
CCCTCCTTCTCTCACTTTCGTCCACTAAACGATGGCAGCACATGGCAGAC
ACTCTGCTTTCTGTTGCAGCTATCCCAGATGAAGGACAAGGATTGGCAAA
ACTCCTTTTCTGTTATCAGGGAATGGTTTGGCCTTCTTAATGTACAAAAA
TTAACTCCGTTGAATACCACGGGGCCCTTTGAACCCCAAGGCAACAAACT
TTTCCATAAAATTTTGAAAAACCCAAAGTTCTCTGGTTTTAAAAAAGGCC
CCAAAACAACCCCCCG
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