DY262838

Overview
NameDY262838
Unique NameDY262838
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1307
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY262838_ssr185 microsatellite DY262838_ssr185:185..196. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of DY262838 vs. ExPASy Swiss-Prot
Match: AIR12_ARATH (Auxin-induced in root cultures protein 12 OS=Arabidopsis thaliana GN=AIR12 PE=1 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 1.757e-20
Identity = 62/168 (36.90%), Postives = 90/168 (53.57%), Query Frame = 3 
Query:  156 AQQTCGRQAFNNNKVYSTCTDLPVLNSFLHWNYDQSTNTVDLAFRHT-TTSSSRWVAWALNPSGQRMAGSQCLVAFQNSTG-RPVAYTTPIGSGSPTLQPGSLSFQVPNISA-TLEGNQWTIFAXXXXXXXXXXXXXVWQ-EGPMNGDTPGAHAMSGDNARSVGTIDF 647
            +QQ C  Q  N+   + +C DLPVLNS+LH+ Y+ S +++ +AF  T + ++  WVAWA+NP+G +MAGSQ  +A+++  G  PV  T  I S S +L  G L+F   N+ A +L G +  IF              VWQ  G +    PG H    DN  S   + F
Sbjct:   25 SQQACKSQNLNSAGPFDSCEDLPVLNSYLHYTYNSSNSSLSVAFVATPSQANGGWVAWAINPTGTKMAGSQAFLAYRSGGGAAPVVKTYNISSYS-SLVEGKLAFDFWNLRAESLSGGRIAIFTTVKVPAGADSVNQVWQIGGNVTNGRPGVHPFGPDNLGSHRVLSF 191
The following BLAST results are available for this feature:
BLAST of DY262838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
AIR12_ARATH1.757e-2036.90Auxin-induced in root cultures protein 12 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA10AD06RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262838 ID=DY262838; Name=DY262838; organism=Citrus clementina; type=EST; length=1307bp
AAACATTTTGCCTTGGGAAAACACTTCCAGTGCTTTCGGGAACTTGTTTT
CATTTCAAGGATTTGATCTGCTTCCTCTAGATCAACATGGTGAACAAAGC
TATAGCATGTGCTTTGTTCTTTAGTTTCGTTGCTGCTCTTTTTGCTTCAT
CATATGCACAACAAACTTGCGGACGCCAGGCTTTCAACAACAACAAAGTA
TACAGTACATGCACAGATCTTCCCGTGCTGAATTCATTTCTCCACTGGAA
TTATGATCAGTCAACAAACACCGTCGATCTCGCCTTCCGGCACACGACCA
CGAGCTCATCCCGATGGGTGGCATGGGCACTGAACCCATCAGGCCAAAGA
ATGGCAGGCTCACAGTGTCTTGTGGCCTTTCAAAACTCAACTGGGCGTCC
CGTGGCTTATACTACTCCTATTGGTTCTGGCTCGCCGACGCTGCAACCGG
GTAGTTTGAGCTTCCAAGTGCCAAATATTTCAGCCACTCTTGAGGGAAAT
CAATGGACTATTTTTGCAACTTTGCAGCTTACTAACAATTTGTTGTCAAC
TAACCAAGTTTGGCAAGAAGGTCCAATGAACGGTGATACTCCTGGCGCCC
ATGCCATGAGCGGTGATAATGCAAGATCAGTTGGTACCATTGATTTTAGA
ACCGGACAGACCACAGCAGGTGGTGGAAGCTCCGACTCCAGGAGAAGGAG
GAGGAATACTCATGGAGTACTAAACGCAGTGAGTTGGGGAGTTCTCATGC
CAATGGGAGCCATGATAGCTAGGTACCTTAAGGTGTTCAAGACTGCAAAT
CCAGCATGGTTTTATCTCCATGTTGCTTGCCAAGCTTCTGGCTATATTGT
TGGCGTTGCAAGATGGGGAACTGGTATCAAGCTTGGAAATGATAGTCCTG
GAATTAAGTATAATAAACACAGGAACATTGGCATTGCCCTCTTTGCCATT
GGAACACTTCAGATGTTTGCAATGCTTTTGAGGCCAAACCTGATCACAAT
ACAGACTAAATTGAACATCAATCACGGGAGCCTGGGTAACGTTGGCAAAT
TCCGAACATATCAACATTTTTTAAGGCTTCAATTCTGGAATCTGAAAAGA
AATGAAAAAGGGTAACTTGGGCTTCTCCTATTTCGGGGCCTGTTTCCTGC
TTGGGGGAAACCCAAAATTGGGGTTTATTTTTTTAAAAGAGAAAAAGGGC
AATTTTTGGAAAAACCCCCCCCCACACATTATAAGGAAACTAACAGGGAC
CACCAGGGGGTTTTGGGGGGCCCAACAAAAACACCACCGAGGGGGGGGGG
GTTTTTT
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