DY262842

Overview
NameDY262842
Unique NameDY262842
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1315
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY262842_ssr27 microsatellite DY262842_ssr27:27..36. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY262842 vs. ExPASy Swiss-Prot
Match: RPIA_ARATH (Probable ribose-5-phosphate isomerase OS=Arabidopsis thaliana GN=At2g01290 PE=2 SV=1)

HSP 1 Score: 331.643 bits (849), Expect = 6.177e-90
Identity = 166/222 (74.77%), Postives = 195/222 (87.84%), Query Frame = 1
Query:  295 LTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGE--QPFVTDNGNYVIDLYLKKDIGDLKVQATTFCGLPVFVKHRMFLDMATTV 954
            LTQDELK+IAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKL NIVGIPTSKKT EQA+SLGIPLSDLD++PV+DL+IDGADEVDPF+NLVKGRGGSLLREKM+EGA KKFVVIVD+SK+V H+GGS LA+PVE+VP+CWKFTA++L+ L E  GC A LR  GE  + FVTDNGNY++D+++++D+GDL   +     LP  V+H MFLDMA+TV
Sbjct:   31 LTQDELKRIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLENIVGIPTSKKTQEQALSLGIPLSDLDAHPVIDLSIDGADEVDPFLNLVKGRGGSLLREKMIEGASKKFVVIVDDSKMVKHIGGSKLALPVEIVPFCWKFTAEKLRSLLEGYGCEANLR-LGEKGKAFVTDNGNYIVDMHVEEDMGDLGAVSDAILRLPGVVEHGMFLDMASTV 251          
BLAST of DY262842 vs. ExPASy Swiss-Prot
Match: RPIA_PYRKO (Ribose-5-phosphate isomerase A OS=Pyrococcus kodakaraensis GN=rpiA PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 5.302e-41
Identity = 91/221 (41.18%), Postives = 143/221 (64.71%), Query Frame = 1
Query:  304 DELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQ--PFVTDNGNYVIDLYLKK--DIGDLKVQATTFCGLPVFVKHRMFLDMATTV 954
            +E+KK  A +A++F+E  MV+GLGTGST  + ++ +G+LL +G+L ++ G+PTS +    A+  GIP+  LD    +D+A+DGADEVDP MNL+KGRG +L  EK++E     F+V+VDESKLV +L G  + +P+EV+P  W+  A+ L    E     A+LR   ++  P VTDNGN+++D    +  D  DL+++  T   +P  V++ +F D+A  +
Sbjct:    4 EEMKKAVAKEALKFIEDEMVVGLGTGSTTAYFINYLGKLLMEGELEDVYGVPTSHQARLLALEAGIPVVSLDEVDAIDIAVDGADEVDPHMNLIKGRGAALTMEKIIEYRAGMFIVLVDESKLVEYL-GQKMPVPIEVIPAAWRAIAEEL----EVFNATAELRMAVKKDGPVVTDNGNFILDAKFARIEDPLDLEIELNT---IPGVVENGIFADIADII 216          
BLAST of DY262842 vs. ExPASy Swiss-Prot
Match: RPIA_SYNJA (Ribose-5-phosphate isomerase A OS=Synechococcus sp. (strain JA-3-3Ab) GN=rpiA PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.543e-40
Identity = 100/217 (46.08%), Postives = 140/217 (64.52%), Query Frame = 1
Query:  304 DELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVD-PFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGE-QPFVTDNGNYVIDLYLKKDIGDLKVQATTFCGLPVFVKHRMFLDMAT 948
            DELK+ AA  A + V+SGMV+GLGTGSTA  AV  + + +++  L   +G+PTS++T EQA SLGIPL+ L+  P +DLAIDGADE++   +NL+KG GG+LLREK+VE +  + ++I D SK V HL G+   +PVEVV + WK T  R++ L    GC A LR T E  P++TD  +Y++D          K+ A    G    V+H +F+ MAT
Sbjct:    5 DELKQAAAQAAAQKVQSGMVVGLGTGSTAAFAVGALAQRMQKEGL-QFIGVPTSERTAEQARSLGIPLATLEEQPRLDLAIDGADEIEVGSLNLIKGAGGALLREKLVEASAAELIIIADASKKVAHL-GTRFPVPVEVVRFGWKTTLARVEAL----GCQAVLRRTAEGDPYLTDEQHYILDCQFGPIANPAKL-AEQLKGTVGVVEHGLFIGMAT 214          
BLAST of DY262842 vs. ExPASy Swiss-Prot
Match: RPIA_PYRAB (Ribose-5-phosphate isomerase A OS=Pyrococcus abyssi GN=rpiA PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 2.631e-40
Identity = 88/221 (39.82%), Postives = 144/221 (65.16%), Query Frame = 1
Query:  304 DELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLR--TTGEQPFVTDNGNYVIDLYLKK--DIGDLKVQATTFCGLPVFVKHRMFLDMATTV 954
            +E+KKIAA +A++F+E  MV+GLGTGST  + +  +G+++++G++++IVG+PTS ++   A+  GIP++ LD    +D+A+DGADEVDP +NL+KGRG +L  EK++E     F+V+VDE KLV +L    + +P+EV+P  W+   + L          AKLR     + P +TDNGN++ID    +  D  D++++  T   +P  V++ +F D+A  V
Sbjct:    4 EEMKKIAAKEALKFIEDDMVIGLGTGSTTAYFIRLLGDMIKKGEVSDIVGVPTSYQSRLLAIESGIPVATLDQVDAIDVAVDGADEVDPNLNLIKGRGAALTMEKIIESRAGMFIVLVDERKLVDYL-CQKMPVPIEVIPQAWRAIVEELSIF----NAEAKLRMGVNKDGPVITDNGNFIIDAKFPRIDDPLDMEIELNT---IPGVVENGIFADIADIV 216          
BLAST of DY262842 vs. ExPASy Swiss-Prot
Match: RPIA_DESAA (Ribose-5-phosphate isomerase A OS=Desulfatibacillum alkenivorans (strain AK-01) GN=rpiA PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 2.631e-40
Identity = 97/184 (52.72%), Postives = 127/184 (69.02%), Query Frame = 1
Query:  298 TQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTG-EQPFVTDNGNYVID 846
            +QD LKK AA KAVE++ESGMV+GLG+GSTA  A+  I  L+++GKL +IVGIP+S  T E A SLGIPL   + + V+D+ IDGADEVDP +NL+KG GG+LLREK+V  A KK ++IVDESK+   L G+  A+PVEVVP+    TA   + L E  G    +R     + F TDN N ++D
Sbjct:    3 SQDALKKQAAEKAVEYLESGMVVGLGSGSTATFAIHAIARLMKEGKLKDIVGIPSSTPTEEVARSLGIPLVGFEEHAVIDVTIDGADEVDPDLNLIKGGGGALLREKVVAQATKKNIIIVDESKISDKL-GTIFALPVEVVPFA---TASETRFL-ESLGAKVTVRENQLGKAFKTDNHNRILD 181          
BLAST of DY262842 vs. ExPASy Swiss-Prot
Match: RPIA_RHOPT (Ribose-5-phosphate isomerase A OS=Rhodopseudomonas palustris (strain TIE-1) GN=rpiA PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 5.862e-40
Identity = 98/223 (43.95%), Postives = 138/223 (61.88%), Query Frame = 1
Query:  295 LTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRT---TGEQPFVTDNGNYVIDLYLKKDIGDLKVQATTFCGLPVFVKHRMFLDMATTV 954
            + ++ELK+ AA +A+E V  GM LGLGTGSTAKH V+ +GE +R G    I+G+PTS+ T   A   GI L+ LD    +D+ IDGADEVD  ++L+KG GG+LLREK+V  A  + +VI DESKLV  LG     +P+EV+P+    T + LQ+ F   GC  +L+         FVTD G++++D  L + I D    A     +P  V+H +F+ MA+TV
Sbjct:    1 MDKEELKRRAAARALEEVRGGMKLGLGTGSTAKHFVELLGERVRLG--LEIIGVPTSEVTRADAERCGIRLTSLDEIDRLDITIDGADEVDHHLDLIKGGGGALLREKIVAAASDRMIVIADESKLVDTLG--RFPLPIEVIPFGLGATRRALQNAFTAAGCDGELKLRPGKDGHAFVTDGGHWILDAQLGR-IPDAPRLAQLLSVIPGVVEHGLFVGMASTV 218          
BLAST of DY262842 vs. ExPASy Swiss-Prot
Match: RPIA_RHOPA (Ribose-5-phosphate isomerase A OS=Rhodopseudomonas palustris GN=rpiA PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 5.862e-40
Identity = 98/223 (43.95%), Postives = 138/223 (61.88%), Query Frame = 1
Query:  295 LTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRT---TGEQPFVTDNGNYVIDLYLKKDIGDLKVQATTFCGLPVFVKHRMFLDMATTV 954
            + ++ELK+ AA +A+E V  GM LGLGTGSTAKH V+ +GE +R G    I+G+PTS+ T   A   GI L+ LD    +D+ IDGADEVD  ++L+KG GG+LLREK+V  A  + +VI DESKLV  LG     +P+EV+P+    T + LQ+ F   GC  +L+         FVTD G++++D  L + I D    A     +P  V+H +F+ MA+TV
Sbjct:    1 MDKEELKRRAAARALEEVRGGMKLGLGTGSTAKHFVELLGERVRLG--LEIIGVPTSEVTRADAERCGIRLTSLDEIDRLDITIDGADEVDHHLDLIKGGGGALLREKIVAAASDRMIVIADESKLVDTLG--RFPLPIEVIPFGLGATRRALQNAFTAAGCDGELKLRPGKDGHAFVTDGGHWILDAQLGR-IPDAPRLAQLLSVIPGVVEHGLFVGMASTV 218          
BLAST of DY262842 vs. ExPASy Swiss-Prot
Match: RPIA_NITWN (Ribose-5-phosphate isomerase A OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rpiA PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 5.862e-40
Identity = 93/220 (42.27%), Postives = 135/220 (61.36%), Query Frame = 1
Query:  295 LTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKL---RTTGEQPFVTDNGNYVIDLYLKKDIGDLKVQATTFCGLPVFVKHRMFLDMA 945
            +T D LK+ AA +A+E+VE GM LGLGTGSTAKH V+ +GE +R G    +VG+PTS+ T   A   G+PL+ LD    +DL +DGADE+DP +NL KG GG+LLREK+V  A  + +VI DE+K V  LG     +P+EV+P+    T + + ++F   G   +L   +      FVTD G+++ D +L + I D    A     +P  V+H +F+ +A
Sbjct:    1 MTMDALKRQAAARALEYVEDGMRLGLGTGSTAKHFVELLGERVRDG--LKVVGVPTSEATRADAERCGVPLTTLDDLDRLDLTVDGADEIDPDLNLTKGGGGALLREKIVAAASDRMIVIADETKWVAGLG--RFPLPIEVIPFGLAATRRAITEVFAKAGVSGELAVRKRPDGHAFVTDGGHWIFDAHLGQ-IPDASYLAGLLNPIPGVVEHGLFIGLA 215          
BLAST of DY262842 vs. ExPASy Swiss-Prot
Match: RPIA_RHOP5 (Ribose-5-phosphate isomerase A OS=Rhodopseudomonas palustris (strain BisA53) GN=rpiA PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 1.706e-39
Identity = 94/223 (42.15%), Postives = 138/223 (61.88%), Query Frame = 1
Query:  295 LTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQ---PFVTDNGNYVIDLYLKKDIGDLKVQATTFCGLPVFVKHRMFLDMATTV 954
            ++ DELK+ AA  A+E V  GM LGLGTGSTAKH V+ +G  ++ G    +VG+PTS+ T   A   GIPL+ LD    +DL +DGADE+DP +NLVKG GG+LLREK+V  A  + +VI D+SKLV  LG     +P+EV+P+    T + ++     CG   +L+    +    FVTD G++++D +L + I D    A     +P  V+H +F+ +A++V
Sbjct:    1 MSSDELKRQAAAVALEQVRDGMKLGLGTGSTAKHFVELLGAKVQGG--LQVVGVPTSEVTRADAERCGIPLATLDEVDHLDLTVDGADEIDPALNLVKGGGGALLREKIVAAASGRMIVIADDSKLVETLG--RFPLPIEVIPFGLAATRRAIEQALAVCGIDGELKLRNGKDGHAFVTDGGHWIVDAHLGR-IPDAPRLAGLLSVIPGIVEHGLFIGLASSV 218          
BLAST of DY262842 vs. ExPASy Swiss-Prot
Match: RPIA_NITHX (Ribose-5-phosphate isomerase A OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=rpiA PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 1.706e-39
Identity = 93/220 (42.27%), Postives = 136/220 (61.82%), Query Frame = 1
Query:  295 LTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKL---RTTGEQPFVTDNGNYVIDLYLKKDIGDLKVQATTFCGLPVFVKHRMFLDMA 945
            +T D LK+ AA +A+E+VE GM LGLGTGSTAKH V+ +GE +R G    +VG+PTS+ T   A   GIPL+ LD    +DL +DGADE+DP +NL+KG GG+LLREK+V  A ++ +VI DE+K V  LG     +P+EV+P+    T + + + F   G   ++   +      FVTD G+++ D +L + I D    A     +P  V+H +F+ +A
Sbjct:    1 MTLDALKRQAAARALEYVEDGMRLGLGTGSTAKHFVELLGERVRDG--LKVVGVPTSEATRADAERCGIPLTTLDDLDRLDLTVDGADEIDPDLNLIKGGGGALLREKIVAAASERMIVIADETKWVAGLG--RFPLPIEVIPFGLAATRRAIAEAFTKAGASGQMVVRKGPDGLAFVTDGGHWIFDAHLGQ-IPDASHLAGLLNPIPGVVEHGLFIGLA 215          
The following BLAST results are available for this feature:
BLAST of DY262842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 459
Match NameE-valueIdentityDescription
RPIA_ARATH6.177e-9074.77Probable ribose-5-phosphate isomerase OS=Arabidops... [more]
RPIA_PYRKO5.302e-4141.18Ribose-5-phosphate isomerase A OS=Pyrococcus kodak... [more]
RPIA_SYNJA1.543e-4046.08Ribose-5-phosphate isomerase A OS=Synechococcus sp... [more]
RPIA_PYRAB2.631e-4039.82Ribose-5-phosphate isomerase A OS=Pyrococcus abyss... [more]
RPIA_DESAA2.631e-4052.72Ribose-5-phosphate isomerase A OS=Desulfatibacillu... [more]
RPIA_RHOPT5.862e-4043.95Ribose-5-phosphate isomerase A OS=Rhodopseudomonas... [more]
RPIA_RHOPA5.862e-4043.95Ribose-5-phosphate isomerase A OS=Rhodopseudomonas... [more]
RPIA_NITWN5.862e-4042.27Ribose-5-phosphate isomerase A OS=Nitrobacter wino... [more]
RPIA_RHOP51.706e-3942.15Ribose-5-phosphate isomerase A OS=Rhodopseudomonas... [more]
RPIA_NITHX1.706e-3942.27Ribose-5-phosphate isomerase A OS=Nitrobacter hamb... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10AD10RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262842 ID=DY262842; Name=DY262842; organism=Citrus clementina; type=EST; length=1315bp
CGCCACCCTCCCTTTTCTTTCTTCCCCTCTCTCTCTAGAGTCTCTATAAA
TAAGACCCTTTCTGGCTTTCTCATCCACACGCATTCACAACCATCCAATC
CCAATCCCTCCTCTCCCATTCAGAAGTAAAAAAAAAAAACTCTTCATTCA
ATCTTTTCATCAAACACCCCGCTGTTTCTCTTAACATTCCTCTGAATCCC
CTTCCCTGTAGAAATGGCTATCGCTATTTCTGCAGAGAAACTGTCTTCTG
TGGAGACTGGTTTGTCTCCTTTATCTTCCCCTCCGCCGGTGATTCTGACC
CAAGACGAGCTCAAGAAGATTGCTGCTTACAAGGCCGTTGAGTTTGTCGA
ATCCGGGATGGTTCTCGGCCTCGGCACCGGCTCCACCGCCAAGCACGCCG
TTGACAGAATCGGCGAGTTGTTGCGCCAAGGCAAGCTCACCAACATTGTG
GGGATACCCACCTCCAAGAAGACTCACGAACAGGCCGTTTCGCTCGGTAT
TCCTCTCTCAGATCTTGACTCGTATCCCGTCGTTGATTTGGCAATCGACG
GCGCTGACGAAGTCGATCCCTTCATGAATTTGGTCAAAGGCCGGGGTGGG
TCCTTGTTGAGGGAGAAGATGGTGGAGGGTGCCTGTAAGAAGTTTGTTGT
TATTGTCGACGAGTCCAAGCTGGTGCCTCATCTCGGAGGGAGCGGCCTGG
CCATGCCCGTTGAAGTGGTGCCGTACTGTTGGAAGTTTACGGCCAAGAGG
CTTCAGGATTTGTTTGAGGATTGTGGCTGTGTTGCCAAGCTCAGAACCAC
CGGTGAGCAGCCGTTTGTCACCGATAATGGCAACTACGTTATTGATTTGT
ATTTGAAGAAAGACATTGGCGATTTGAAAGTGCAAGCGACAACATTTTGC
GGCTTGCCGGTGTTTGTGAAGCACCGGATGTTTCTTGATATGGCTACAAC
TGTGGATTGTAGCGAGCGAGCTCGGCGTTACATTAAGAAAAAAAAATGAT
TTTTTTTTAATTTTTAATTTTAAACGGGTCAAGTCTAATTCCCAAGTGAA
TTTGGGGCACATTGGCTTGGGTAAACAAAAAAAAAAAAGGGAATTTTGGG
GGCCATTTTTTAAAGAAATGGAGAAATTCCCCGGTAATAAAGAGGGACCT
TCAAAATTTTTTTTTGAAAAAATTATAAAAAAAGAAATAAAGGGGAATTT
CTAAAAAAAAAAATAAAAGGAGAAAAAGGAAAAAAAGGGGGGAAACAAAA
AAATATAACTTTTTTTTTTTTTTTTTAAAAGAAATATATTTTCCTCTGGT
GTTTTAAAATATAAA
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