DY262850

Overview
NameDY262850
Unique NameDY262850
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1290
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262850 vs. ExPASy Swiss-Prot
Match: C3H48_ARATH (Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana GN=ZFWD1 PE=2 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 7.139e-67
Identity = 147/333 (44.14%), Postives = 186/333 (55.86%), Query Frame = 3
Query:  198 MDFDAHGGNKRVFHRLXXXXXXXXXXXLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAXVINLGGEVGCMISEGPWIFIGGTNFVKAWNTQLILTWVLMDLWENFTQCLSVMIYS---FAGRQEGGLFGMEF*WYTQLV--LTSLVPYRVTPLRGYFYLSGLKSFTLGSRENSKKVWKP*NLARGNKTQQENISLWDFPFFCWVTF 1181
            MD D +GGNKRVF RL             T D+ QKVC +WRAG+CNR+PCPYLHRELP P                                  N+      NR V KT+ LC+ WV GNC YG+KC++LH W+ GD F LLTQL+GHQKVV+GI LPSGSDKLY+ SKDETVR+WDCASGQC  V+NLGGEVGC+ISEGPW+ +G  N VKAWN Q       + L     Q  S+++ +   FAG Q+G +    +   T       SL+ + +  +  Y   + L S   G+ +NS KVW   NL +  +T  E+ S+      CW  F
Sbjct:    1 MDLDMNGGNKRVFQRLGGGSNRP------TTDSNQKVCFHWRAGRCNRYPCPYLHRELPGPGSGPVAASSNKRVADESGFAGPSHRRGPGFSGTANNWGRFGGNRTVTKTEKLCKFWVDGNCPYGDKCRYLHCWSKGDSFSLLTQLDGHQKVVTGIALPSGSDKLYTASKDETVRIWDCASGQCTGVLNLGGEVGCIISEGPWLLVGMPNLVKAWNIQ---NNADLSLNGPVGQVYSLVVGTDLLFAGTQDGSILVWRYNSTTSCFDPAASLLGHTLAVVSLYVGANRLYS---GAMDNSIKVWSLDNL-QCIQTLTEHTSV-VMSLICWDQF 319          
BLAST of DY262850 vs. ExPASy Swiss-Prot
Match: C3H63_ARATH (Zinc finger CCCH domain-containing protein 63 OS=Arabidopsis thaliana GN=ZFWD2 PE=2 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 2.297e-65
Identity = 141/312 (45.19%), Postives = 179/312 (57.37%), Query Frame = 3
Query:  198 MDFDAHGGNKRVFHRLXXXXXXXXXXXLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYRAGNSKNS---NINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAXVINLGGEVGCMISEGPWIFIGGTNFVKAWNTQLILTWVLMDLWENFTQCLSVMIYS---FAGRQEGGLFGMEF*WYTQLV--LTSLVPYRVTPLRGYFYLSGLKSFTLGSRENSKKVWKP*NL 1109
            MDFD +GGNKRVF+RL           ++  DTRQKVC +WRAG+CNR PCPYLHRELP P                                 GNS +S      NR V KT+ +C  WV GNC YG+KC++LH W+ G+ F LLTQL+GH+K+VSGI LPSGSDKLY+GSKDET+RVWDCASGQC  V+ LGGE+GC++SEGPW+ +G  N VKAWN   I T     L     Q  S+++ +   FAG Q+G +    +   T       SL  + +  +  Y   + L S   GS + + KVW   NL
Sbjct:    1 MDFDLNGGNKRVFNRLGGGGGSTRP--MAPTDTRQKVCFHWRAGRCNRSPCPYLHRELPGPGPGQGQGPGYTNKRVAEESGFAGPSHRRGPGFNGNSSSSWGRFGGNRTVTKTEKVCNFWVDGNCTYGDKCRYLHCWSKGESFALLTQLDGHEKLVSGIALPSGSDKLYTGSKDETLRVWDCASGQCTGVLKLGGEIGCVLSEGPWLLVGMPNLVKAWN---IETNADQSLSGPVGQVYSLVVGTDLLFAGTQDGSILAWRYNAATNCFEPSASLTGHTLAVVTLYVGANRLYS---GSMDKTIKVWSLDNL 304          
BLAST of DY262850 vs. ExPASy Swiss-Prot
Match: C3H17_ORYSJ (Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica GN=Os02g0677700 PE=2 SV=2)

HSP 1 Score: 197.593 bits (501), Expect = 1.353e-49
Identity = 110/265 (41.51%), Postives = 144/265 (54.34%), Query Frame = 3
Query:  198 MDFDAHG--GNKRVFHRLXXXXXXXXXXXLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLP----PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAXVINLGGEVGCMISEGPWIFIGGTNFVKAWNTQLILTWVLMDLWENFTQCLSVMIYS---FAGRQEGGLFGMEF 965
            MD +  G  GNKRV HRL            +++ T  KVC +WRAG+CNRFPCPYLH ELP      P                              + G               D  CR ++ G+C YGEKC++ HS+++ D   +LT L+GH+KVV+GI LP+GSDKLYSGSKD TVR+WDC +GQCA VIN+G E+GCMISEGPW+F+G  + VK WN Q   T   M+L     Q  ++ + +   FA  Q+G +    F
Sbjct:    1 MDIETDGRFGNKRVHHRLGPANGA------ASSSTSGKVCIHWRAGRCNRFPCPYLHSELPEATAKRPSQSGGGGNVWRNPHSGGGGGRGAGGAGGPNKWGRGPGGADGGPRHKVPDRPCRYFLAGDCSYGEKCRYPHSYSMSDSITMLTPLQGHEKVVTGIALPAGSDKLYSGSKDGTVRMWDCQTGQCAGVINMGREIGCMISEGPWLFVGIPDAVKVWNMQ---TQAEMNLTGPTGQVYALAVGNELLFAATQDGRILAWRF 256          
BLAST of DY262850 vs. ExPASy Swiss-Prot
Match: C3H62_ARATH (Zinc finger CCCH domain-containing protein 62 OS=Arabidopsis thaliana GN=ZFWD4 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 4.918e-34
Identity = 58/106 (54.72%), Postives = 73/106 (68.87%), Query Frame = 3
Query:  534 LCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAXVINLGGEVGCMISEGPWIFIGGTNFVKAWNTQ 851
            +C+ W  G C  GE+C+FLHSW+   G  ++  LEGH K + GI LP GSDKL+S S D T+RVWDC SGQC   INL  E G +ISEGPW+F+G  N +KA+N Q
Sbjct:   94 VCKYWKDGKCKRGEQCQFLHSWSCFPGLAMVASLEGHNKELKGIALPEGSDKLFSVSIDGTLRVWDCNSGQCVHSINLDAEAGSLISEGPWVFLGLPNAIKAFNVQ 199          

HSP 2 Score: 33.8834 bits (76), Expect = 4.918e-34
Identity = 29/90 (32.22%), Postives = 38/90 (42.22%), Query Frame = 2
Query:  851 TNTDLGLN--GPVGKFYPMPVRNDLLLRG*AGGGF-IWHGVLMVHPTGFNQLGPLQGHSFAWLLLFVGAKKLYLGFQGKFKK--SLETLK 1105
            T+ DL L   G VG+   M + N +L  G + G   +W          F  L  L+GHS       VG + LY G   K  K   L TL+
Sbjct:  200 TSQDLHLQAAGVVGQVNAMTIANGMLFAGTSSGSILVWKATTDSESDPFKYLTSLEGHSGEVTCFAVGGQMLYSGSVDKTIKMWDLNTLQ 289          
BLAST of DY262850 vs. ExPASy Swiss-Prot
Match: C3H59_ARATH (Zinc finger CCCH domain-containing protein 59 OS=Arabidopsis thaliana GN=ZFWD3 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 9.115e-30
Identity = 58/106 (54.72%), Postives = 72/106 (67.92%), Query Frame = 3
Query:  534 LCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAXVINLGGEVGCMISEGPWIFIGGTNFVKAWNTQ 851
            +C  W  GNC  GEKC+FLHSW+   G  ++  LEGH+  + GI LP GSDKL+S S D T+ +WDC SGQC   INL  E G +ISEGPW+F+G  N VKA+N Q
Sbjct:  150 VCNFWKDGNCKKGEKCQFLHSWSCFPGLAMVAALEGHKNDIKGIALPQGSDKLFSVSGDGTLLIWDCNSGQCVRSINLQAEAGSLISEGPWVFLGLPNAVKAFNVQ 255          
The following BLAST results are available for this feature:
BLAST of DY262850 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
C3H48_ARATH7.139e-6744.14Zinc finger CCCH domain-containing protein 48 OS=A... [more]
C3H63_ARATH2.297e-6545.19Zinc finger CCCH domain-containing protein 63 OS=A... [more]
C3H17_ORYSJ1.353e-4941.51Zinc finger CCCH domain-containing protein 17 OS=O... [more]
C3H62_ARATH4.918e-3454.72Zinc finger CCCH domain-containing protein 62 OS=A... [more]
C3H59_ARATH9.115e-3054.72Zinc finger CCCH domain-containing protein 59 OS=A... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA10AE08RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262850 ID=DY262850; Name=DY262850; organism=Citrus clementina; type=EST; length=1290bp
ATTTTGCAAATCCCTCCAATTGAAACTCACCACGAAAAGATTCAATTTTG
AGACTAAATTTAGGGTTTTTTGTTATGATAAGATTCGATTTCAATCGGGC
ATCTTACGTGTCGGATTCGAGCAATTTCATTATTATTCAACGGTCTCATT
CTCATTCATCTTTCTGTTATTTCCGTTATTATTAATAATAATTGGTTATG
GATTTCGACGCGCACGGTGGCAACAAGCGCGTGTTCCATCGACTAGGAGG
AGGTGGTGGTGACGGCGGTGGCGGTGGGCTCTCAACGGCCGATACAAGGC
AGAAAGTATGTAACTATTGGCGCGCTGGAAAGTGTAATCGGTTTCCATGT
CCGTACTTACACAGAGAATTGCCACTGCCGCCGGCGGCAACAGCTAACGG
TGCTGCTGCGAAGCGGTTTGCGAATAACACGTGGGGTAGAAATAATAATT
TTAATAATCATAGCAATAATTATAGGGCGGGTAATAGTAAAAATAGTAAT
ATTAATAATAGGGCTGTTATAAAGACGGATATATTGTGTAGAAATTGGGT
TCAAGGGAATTGTATGTATGGAGAGAAGTGCAAGTTTTTGCATTCTTGGA
CTGTAGGCGATGGTTTCAAGTTGTTGACTCAGCTTGAAGGGCACCAAAAG
GTTGTGAGTGGGATTACTCTGCCATCGGGTTCAGATAAGCTTTATTCTGG
TAGTAAAGACGAGACTGTTAGAGTTTGGGATTGTGCTTCTGGACAGTGTG
CANGTGTGATTAATCTTGGTGGTGAAGTTGGTTGCATGATTAGTGAAGGT
CCTTGGATTTTCATTGGTGGAACAAATTTTGTCAAGGCTTGGAACACCCA
ACTAATACTGACCTGGGTCTTAATGGACCTGTGGGAAAATTTTACCCAAT
GCCTGTCCGTAATGATTTACTCCTTCGCGGGTAGGCAGGAGGGGGGTTTA
TTTGGCATGGAGTTTTAATGGTACACCCAACTGGTTTTAACCAGCTTGGT
CCCCTACAGGGTCACTCCTTTGCGTGGTTACTTTTATTTGTCGGGGCTAA
AAAGCTTTACCTTGGGTTCCAGGGAAAATTCAAAAAAAGTTTGGAAACCT
TAAAACTTGGCCCGGGGAAACAAAACCCAACAAGAAAACATTTCACTCTG
GGATTTCCCCTTCTTTTGCTGGGTTACATTTTTTTTTTTACAAGTTTCAC
TTTTGCCAGAAAAATAAAAAAGGTGGGGGTTTTTGGCCTAAAAAAAATGG
AGAAAAAAAGACGGGGAAAGTGGTCCTTATTATCACCTCA
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