DY262850
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY262850 vs. ExPASy Swiss-Prot
Match: C3H48_ARATH (Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana GN=ZFWD1 PE=2 SV=1) HSP 1 Score: 254.988 bits (650), Expect = 7.139e-67 Identity = 147/333 (44.14%), Postives = 186/333 (55.86%), Query Frame = 3 Query: 198 MDFDAHGGNKRVFHRLXXXXXXXXXXXLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAXVINLGGEVGCMISEGPWIFIGGTNFVKAWNTQLILTWVLMDLWENFTQCLSVMIYS---FAGRQEGGLFGMEF*WYTQLV--LTSLVPYRVTPLRGYFYLSGLKSFTLGSRENSKKVWKP*NLARGNKTQQENISLWDFPFFCWVTF 1181 MD D +GGNKRVF RL T D+ QKVC +WRAG+CNR+PCPYLHRELP P N+ NR V KT+ LC+ WV GNC YG+KC++LH W+ GD F LLTQL+GHQKVV+GI LPSGSDKLY+ SKDETVR+WDCASGQC V+NLGGEVGC+ISEGPW+ +G N VKAWN Q + L Q S+++ + FAG Q+G + + T SL+ + + + Y + L S G+ +NS KVW NL + +T E+ S+ CW F Sbjct: 1 MDLDMNGGNKRVFQRLGGGSNRP------TTDSNQKVCFHWRAGRCNRYPCPYLHRELPGPGSGPVAASSNKRVADESGFAGPSHRRGPGFSGTANNWGRFGGNRTVTKTEKLCKFWVDGNCPYGDKCRYLHCWSKGDSFSLLTQLDGHQKVVTGIALPSGSDKLYTASKDETVRIWDCASGQCTGVLNLGGEVGCIISEGPWLLVGMPNLVKAWNIQ---NNADLSLNGPVGQVYSLVVGTDLLFAGTQDGSILVWRYNSTTSCFDPAASLLGHTLAVVSLYVGANRLYS---GAMDNSIKVWSLDNL-QCIQTLTEHTSV-VMSLICWDQF 319
BLAST of DY262850 vs. ExPASy Swiss-Prot
Match: C3H63_ARATH (Zinc finger CCCH domain-containing protein 63 OS=Arabidopsis thaliana GN=ZFWD2 PE=2 SV=1) HSP 1 Score: 249.98 bits (637), Expect = 2.297e-65 Identity = 141/312 (45.19%), Postives = 179/312 (57.37%), Query Frame = 3 Query: 198 MDFDAHGGNKRVFHRLXXXXXXXXXXXLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYRAGNSKNS---NINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAXVINLGGEVGCMISEGPWIFIGGTNFVKAWNTQLILTWVLMDLWENFTQCLSVMIYS---FAGRQEGGLFGMEF*WYTQLV--LTSLVPYRVTPLRGYFYLSGLKSFTLGSRENSKKVWKP*NL 1109 MDFD +GGNKRVF+RL ++ DTRQKVC +WRAG+CNR PCPYLHRELP P GNS +S NR V KT+ +C WV GNC YG+KC++LH W+ G+ F LLTQL+GH+K+VSGI LPSGSDKLY+GSKDET+RVWDCASGQC V+ LGGE+GC++SEGPW+ +G N VKAWN I T L Q S+++ + FAG Q+G + + T SL + + + Y + L S GS + + KVW NL Sbjct: 1 MDFDLNGGNKRVFNRLGGGGGSTRP--MAPTDTRQKVCFHWRAGRCNRSPCPYLHRELPGPGPGQGQGPGYTNKRVAEESGFAGPSHRRGPGFNGNSSSSWGRFGGNRTVTKTEKVCNFWVDGNCTYGDKCRYLHCWSKGESFALLTQLDGHEKLVSGIALPSGSDKLYTGSKDETLRVWDCASGQCTGVLKLGGEIGCVLSEGPWLLVGMPNLVKAWN---IETNADQSLSGPVGQVYSLVVGTDLLFAGTQDGSILAWRYNAATNCFEPSASLTGHTLAVVTLYVGANRLYS---GSMDKTIKVWSLDNL 304
BLAST of DY262850 vs. ExPASy Swiss-Prot
Match: C3H17_ORYSJ (Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica GN=Os02g0677700 PE=2 SV=2) HSP 1 Score: 197.593 bits (501), Expect = 1.353e-49 Identity = 110/265 (41.51%), Postives = 144/265 (54.34%), Query Frame = 3 Query: 198 MDFDAHG--GNKRVFHRLXXXXXXXXXXXLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLP----PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAXVINLGGEVGCMISEGPWIFIGGTNFVKAWNTQLILTWVLMDLWENFTQCLSVMIYS---FAGRQEGGLFGMEF 965 MD + G GNKRV HRL +++ T KVC +WRAG+CNRFPCPYLH ELP P + G D CR ++ G+C YGEKC++ HS+++ D +LT L+GH+KVV+GI LP+GSDKLYSGSKD TVR+WDC +GQCA VIN+G E+GCMISEGPW+F+G + VK WN Q T M+L Q ++ + + FA Q+G + F Sbjct: 1 MDIETDGRFGNKRVHHRLGPANGA------ASSSTSGKVCIHWRAGRCNRFPCPYLHSELPEATAKRPSQSGGGGNVWRNPHSGGGGGRGAGGAGGPNKWGRGPGGADGGPRHKVPDRPCRYFLAGDCSYGEKCRYPHSYSMSDSITMLTPLQGHEKVVTGIALPAGSDKLYSGSKDGTVRMWDCQTGQCAGVINMGREIGCMISEGPWLFVGIPDAVKVWNMQ---TQAEMNLTGPTGQVYALAVGNELLFAATQDGRILAWRF 256
BLAST of DY262850 vs. ExPASy Swiss-Prot
Match: C3H62_ARATH (Zinc finger CCCH domain-containing protein 62 OS=Arabidopsis thaliana GN=ZFWD4 PE=2 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 4.918e-34 Identity = 58/106 (54.72%), Postives = 73/106 (68.87%), Query Frame = 3 Query: 534 LCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAXVINLGGEVGCMISEGPWIFIGGTNFVKAWNTQ 851 +C+ W G C GE+C+FLHSW+ G ++ LEGH K + GI LP GSDKL+S S D T+RVWDC SGQC INL E G +ISEGPW+F+G N +KA+N Q Sbjct: 94 VCKYWKDGKCKRGEQCQFLHSWSCFPGLAMVASLEGHNKELKGIALPEGSDKLFSVSIDGTLRVWDCNSGQCVHSINLDAEAGSLISEGPWVFLGLPNAIKAFNVQ 199 HSP 2 Score: 33.8834 bits (76), Expect = 4.918e-34 Identity = 29/90 (32.22%), Postives = 38/90 (42.22%), Query Frame = 2 Query: 851 TNTDLGLN--GPVGKFYPMPVRNDLLLRG*AGGGF-IWHGVLMVHPTGFNQLGPLQGHSFAWLLLFVGAKKLYLGFQGKFKK--SLETLK 1105 T+ DL L G VG+ M + N +L G + G +W F L L+GHS VG + LY G K K L TL+ Sbjct: 200 TSQDLHLQAAGVVGQVNAMTIANGMLFAGTSSGSILVWKATTDSESDPFKYLTSLEGHSGEVTCFAVGGQMLYSGSVDKTIKMWDLNTLQ 289
BLAST of DY262850 vs. ExPASy Swiss-Prot
Match: C3H59_ARATH (Zinc finger CCCH domain-containing protein 59 OS=Arabidopsis thaliana GN=ZFWD3 PE=2 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 9.115e-30 Identity = 58/106 (54.72%), Postives = 72/106 (67.92%), Query Frame = 3 Query: 534 LCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAXVINLGGEVGCMISEGPWIFIGGTNFVKAWNTQ 851 +C W GNC GEKC+FLHSW+ G ++ LEGH+ + GI LP GSDKL+S S D T+ +WDC SGQC INL E G +ISEGPW+F+G N VKA+N Q Sbjct: 150 VCNFWKDGNCKKGEKCQFLHSWSCFPGLAMVAALEGHKNDIKGIALPQGSDKLFSVSGDGTLLIWDCNSGQCVRSINLQAEAGSLISEGPWVFLGLPNAVKAFNVQ 255 The following BLAST results are available for this feature:
BLAST of DY262850 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >DY262850 ID=DY262850; Name=DY262850; organism=Citrus clementina; type=EST; length=1290bpback to top |