DY262852

Overview
NameDY262852
Unique NameDY262852
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1316
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY262852_ssr303 microsatellite DY262852_ssr303:303..323. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY262852 vs. ExPASy Swiss-Prot
Match: BAT43_CAEEL (BTB and MATH domain-containing protein 43 OS=Caenorhabditis elegans GN=bath-43 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 4.088e-17
Identity = 46/150 (30.67%), Postives = 81/150 (54.00%), Query Frame = 1
Query:  436 VFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKDPRLVVEIYEAYLSXQVNTAVLKDSPMKQ 885
            VF AM ++ M+ES +    + D+  + +R  + Y+YT +    EQ+A  L+  A+KYQ+  LK  CE+ L  +L  DN+ +    A  ++A QL   +++ I  N +++   E + +LV   P+L+ E++ A  + Q    VL   P K+
Sbjct:  295 VFSAMFEHHMQESDTNMTTVDDIEPEVMRELLVYMYTGQTKYIEQMAQSLIAAADKYQLDRLKVMCEQALCYQLTTDNASLTLMLADMYSASQLRAHSINFINVNANEVMDTEGWEDLVRDHPKLLEEVFRALATQQTPPVVLVQPPKKR 444          
BLAST of DY262852 vs. ExPASy Swiss-Prot
Match: SPOP_XENTR (Speckle-type POZ protein OS=Xenopus tropicalis GN=spop PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 5.903e-16
Identity = 46/137 (33.58%), Postives = 75/137 (54.74%), Query Frame = 1
Query:  436 VFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKDPRLVVEIYEAYLSXQ 846
            VF AM ++EMEES+   ++I DV  D  +  + ++YT +A   +++A DLL  A+KY ++ LK  CE+ L S L+ +N+      A  H+A QL   A+  I  +   + +   ++ +V   P LV E Y +  S Q
Sbjct:  224 VFSAMFEHEMEESKKNRVEIKDVEPDVFKEMMCFIYTGKASNLDKMADDLLAAADKYALERLKVMCEEALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHASDVMETSGWKSMVVSHPHLVAEAYRSLASAQ 360          
BLAST of DY262852 vs. ExPASy Swiss-Prot
Match: SPOPB_XENLA (Speckle-type POZ protein B OS=Xenopus laevis GN=spop-B PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 5.903e-16
Identity = 46/137 (33.58%), Postives = 75/137 (54.74%), Query Frame = 1
Query:  436 VFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKDPRLVVEIYEAYLSXQ 846
            VF AM ++EMEES+   ++I DV  D  +  + ++YT +A   +++A DLL  A+KY ++ LK  CE+ L S L+ +N+      A  H+A QL   A+  I  +   + +   ++ +V   P LV E Y +  S Q
Sbjct:  224 VFSAMFEHEMEESKKNRVEIKDVEPDVFKEMMCFIYTGKASNLDKMADDLLAAADKYALERLKVMCEEALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHASDVMETSGWKSMVVSHPHLVAEAYRSLASAQ 360          
BLAST of DY262852 vs. ExPASy Swiss-Prot
Match: SPOPA_XENLA (Speckle-type POZ protein A OS=Xenopus laevis GN=spop-A PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 5.903e-16
Identity = 46/137 (33.58%), Postives = 75/137 (54.74%), Query Frame = 1
Query:  436 VFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKDPRLVVEIYEAYLSXQ 846
            VF AM ++EMEES+   ++I DV  D  +  + ++YT +A   +++A DLL  A+KY ++ LK  CE+ L S L+ +N+      A  H+A QL   A+  I  +   + +   ++ +V   P LV E Y +  S Q
Sbjct:  224 VFSAMFEHEMEESKKNRVEIKDVEPDVFKEMMCFIYTGKASNLDKMADDLLAAADKYALERLKVMCEEALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHASDVMETSGWKSMVVSHPHLVAEAYRSLASAQ 360          
BLAST of DY262852 vs. ExPASy Swiss-Prot
Match: SPOP_PONAB (Speckle-type POZ protein OS=Pongo abelii GN=SPOP PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 3.826e-15
Identity = 45/137 (32.85%), Postives = 75/137 (54.74%), Query Frame = 1
Query:  436 VFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKDPRLVVEIYEAYLSXQ 846
            VF AM ++EMEES+   ++I+DV  +  +  + ++YT +A   +++A DLL  A+KY ++ LK  CE  L S L+ +N+      A  H+A QL   A+  I  +   + +   ++ +V   P LV E Y +  S Q
Sbjct:  224 VFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHASDVLETSGWKSMVVSHPHLVAEAYRSLASAQ 360          
BLAST of DY262852 vs. ExPASy Swiss-Prot
Match: SPOP_MOUSE (Speckle-type POZ protein OS=Mus musculus GN=Spop PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 3.826e-15
Identity = 45/137 (32.85%), Postives = 75/137 (54.74%), Query Frame = 1
Query:  436 VFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKDPRLVVEIYEAYLSXQ 846
            VF AM ++EMEES+   ++I+DV  +  +  + ++YT +A   +++A DLL  A+KY ++ LK  CE  L S L+ +N+      A  H+A QL   A+  I  +   + +   ++ +V   P LV E Y +  S Q
Sbjct:  224 VFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHASDVLETSGWKSMVVSHPHLVAEAYRSLASAQ 360          
BLAST of DY262852 vs. ExPASy Swiss-Prot
Match: SPOP_HUMAN (Speckle-type POZ protein OS=Homo sapiens GN=SPOP PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 3.826e-15
Identity = 45/137 (32.85%), Postives = 75/137 (54.74%), Query Frame = 1
Query:  436 VFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKDPRLVVEIYEAYLSXQ 846
            VF AM ++EMEES+   ++I+DV  +  +  + ++YT +A   +++A DLL  A+KY ++ LK  CE  L S L+ +N+      A  H+A QL   A+  I  +   + +   ++ +V   P LV E Y +  S Q
Sbjct:  224 VFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHASDVLETSGWKSMVVSHPHLVAEAYRSLASAQ 360          
BLAST of DY262852 vs. ExPASy Swiss-Prot
Match: SPOP_BOVIN (Speckle-type POZ protein OS=Bos taurus GN=SPOP PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 3.826e-15
Identity = 45/137 (32.85%), Postives = 75/137 (54.74%), Query Frame = 1
Query:  436 VFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKDPRLVVEIYEAYLSXQ 846
            VF AM ++EMEES+   ++I+DV  +  +  + ++YT +A   +++A DLL  A+KY ++ LK  CE  L S L+ +N+      A  H+A QL   A+  I  +   + +   ++ +V   P LV E Y +  S Q
Sbjct:  224 VFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHASDVLETSGWKSMVVSHPHLVAEAYRSLASAQ 360          
BLAST of DY262852 vs. ExPASy Swiss-Prot
Match: SPOP_DANRE (Speckle-type POZ protein OS=Danio rerio GN=spop PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 4.997e-15
Identity = 44/137 (32.12%), Postives = 75/137 (54.74%), Query Frame = 1
Query:  436 VFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKDPRLVVEIYEAYLSXQ 846
            VF AM ++EMEES+   ++I+DV  +  +  + ++YT +A   +++A DLL  A+KY ++ LK  CE  L + L+ +N+      A  H+A QL   A+  I  +   + +   ++ +V   P LV E Y +  S Q
Sbjct:  224 VFSAMFEHEMEESKKNRVEINDVEAEVFKEMMFFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCTSLSVENAAEILILADLHSADQLKTQAVDFINYHASDVMETSGWKSMVASHPHLVAEAYRSLASAQ 360          
BLAST of DY262852 vs. ExPASy Swiss-Prot
Match: TDPZ2_MOUSE (TD and POZ domain-containing protein 2 OS=Mus musculus GN=Tdpoz2 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.608e-13
Identity = 41/139 (29.50%), Postives = 75/139 (53.96%), Query Frame = 1
Query:  436 VFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACL--DEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKDPRLVVEIYEAYLSXQ 846
            VF+AM +++MEE  +   +I ++ +   +  ++++YT +A       +ACD+L  A+KY ++ LK  CE  L   L+ +N+      A  H+ +QL   AL  I  +  +++K   ++ +VE  P LV E + +  S Q
Sbjct:  212 VFRAMFEHQMEERLANCFEIQELDFQVFKEMMDFIYTGKAPTLHSHSMACDVLAAADKYGLEGLKVICEDSLCRNLSVENAAHTLIVADLHSTEQLKTRALHFIAVHASEVSKSSGWKSMVESHPHLVDERFHSLASAQ 350          
The following BLAST results are available for this feature:
BLAST of DY262852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
BAT43_CAEEL4.088e-1730.67BTB and MATH domain-containing protein 43 OS=Caeno... [more]
SPOP_XENTR5.903e-1633.58Speckle-type POZ protein OS=Xenopus tropicalis GN=... [more]
SPOPB_XENLA5.903e-1633.58Speckle-type POZ protein B OS=Xenopus laevis GN=sp... [more]
SPOPA_XENLA5.903e-1633.58Speckle-type POZ protein A OS=Xenopus laevis GN=sp... [more]
SPOP_PONAB3.826e-1532.85Speckle-type POZ protein OS=Pongo abelii GN=SPOP P... [more]
SPOP_MOUSE3.826e-1532.85Speckle-type POZ protein OS=Mus musculus GN=Spop P... [more]
SPOP_HUMAN3.826e-1532.85Speckle-type POZ protein OS=Homo sapiens GN=SPOP P... [more]
SPOP_BOVIN3.826e-1532.85Speckle-type POZ protein OS=Bos taurus GN=SPOP PE=... [more]
SPOP_DANRE4.997e-1532.12Speckle-type POZ protein OS=Danio rerio GN=spop PE... [more]
TDPZ2_MOUSE1.608e-1329.50TD and POZ domain-containing protein 2 OS=Mus musc... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10AE10RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262852 ID=DY262852; Name=DY262852; organism=Citrus clementina; type=EST; length=1316bp
CGAGAGGCTATAATTTTCATTTTACCATCAACCACCGAAACGGAAACTCT
AAGGGGAAAAAAAGATGCGGGGACGTCGGTGCCACTCGACTCGCCACCCA
GACATGTCGGGTACGGATTCGGAATCCGAAGCCGAATCCGAAACGATGCG
TTGCATCTCCTGCAGGGAGGAGTACGGGACCCGGGACGCGGGCACATGCA
AGGAGTGTTACGAGGAGGCGAGCGAGACGGAGGAGGAGCTGAAGCGAGAA
ATCGAAGATCTTAAAGCTAAAGTCGCCTTTTTAAGGTTTTGGTCTCCACT
CGATCATCATCATCATCATCATCACAGCAGTAGGTCCCACTGCGGACCTT
GTTATACCGACGTCGTTTTGGTCGCCGCCTCGGAATCCGGCCCTGCTGGC
CCCGCCGTTCCCGTCCCCGCTCATAAGGCCGTTTTGTGTTTAAAGCCATG
CTAGATAATGAAATGGAAGAAAGTCGGAGTGGCACTATAAAGATCAGTGA
TGTATCATATGATGCCCTTCGTGCATTTGTCAATTATTTGTATACTGCAG
AAGCTTGCCTTGATGAGCAATTGGCCTGTGACCTTTTGGAGTTGGCTGAA
AAATATCAGGTGAAGCATCTTAAAGCATACTGTGAGAAGTTCCTGGTATC
CAAACTGAATTGGGACAATTCTGTTGTGAACTATGCTTTTGCGCACCAGC
ACAATGCAAAGCAGTTGCTTGAAGCAGCACTGTCATTGATCACGGACAAC
ATGGACAAGCTTACCAAGTGCGAGGAGTATAGGGAGCTCGTGGAGAAGGA
TCCCCGACTTGTAGTGGAAATCTATGAAGCTTACCTTTCCNAGCAAGTGA
ATACTGCAGTCCTTAAGGATTCTCCAATGAAGCAATAGGTGTGTAAGGTT
TCTGGGTGTGCTGATCAGATCTGAAGCAAGCCCTGTATTATTTTAGAATG
GGAGATGAGTCATTGATCAGTGTTAATTACCTATGGAATGCTTTGGCTTC
CTCCCAGGGATATGTTTGAGTTTGAAGATGAAAACATAATCTGTAAGGGC
TGCTATGGCTTTGGTAGCAAAACTTTGAATACTGGAATTTCAGGGAAAAA
TAAAAAATTACCTGGGGCCATTAAGGCAATTTTGGGCATAAAAAAATTTT
TAACCCTTTTTTTATTTTCCCCGGGGTTTCTTCTAAGGGGGACCTTCTGA
AAATTTTGAGAACATTTTCCAAAAAAAACAAGGGAAAGATTTTCTGGGGA
AAAAAAAACATAAAAAGGGGTGGTGGGGGTTTTTATCCCCCCCCCTCAAA
AAAGAGGGGTGGGGGT
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