DY262873

Overview
NameDY262873
Unique NameDY262873
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1257
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY262873_ssr493 microsatellite DY262873_ssr493:493..507. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig2369 contig Ccv1_Contig2369:1..1257. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY262873 vs. ExPASy Swiss-Prot
Match: B2_DAUCA (B2 protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 5.651e-69
Identity = 117/146 (80.14%), Postives = 134/146 (91.78%), Query Frame = 1 
Query:  541 RFKTLPATETLPRNEVLGGYIFVCNNDTMQEDLKRQLFGLPPRYRDSVRAITPGLPLFLYNYTTHQLHGIFEATGFGGSNIDPTAWEDKKCKGESRFPAQVRIRVRKLCKALEEDAFRPVLHHYDGPKFRLELSVPETLDLMDLCE 978
            RFKTLP  E+LPRNE +GGYIFVCNNDTMQE+LKRQLFGLPPRYRDSVRAITPGLPLFLYNY+THQLHG+FEA  FGG+NIDPTAWEDKK +GESRFPAQVR+  RK+C+ LEED+FRP+LHHYDGPKFRLEL++PE + L+D+ E
Sbjct:   58 RFKTLPPAESLPRNETVGGYIFVCNNDTMQENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLHGVFEAASFGGTNIDPTAWEDKKNQGESRFPAQVRVMTRKICEPLEEDSFRPILHHYDGPKFRLELNIPEAISLLDIFE 203
The following BLAST results are available for this feature:
BLAST of DY262873 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
B2_DAUCA5.651e-6980.14B2 protein OS=Daucus carota PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionIC0AAA10AG09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262873 ID=DY262873; Name=DY262873; organism=Citrus clementina; type=EST; length=1257bp
GTCTCGTGCGAATAGCAATAGCAGGGAGGTATCATCACAGACTTGACAGT
ATTGGCTGGCAAAGAAAAAAGGATTTGCAAGATGGACAACATGCATAGCT
TTTGGCAATTAGGTGATGAACTTCGAGGGCAATCAAGAACCTCTGAAGAT
CAATCATGGCTACGGGCTGCCTCAAGGTTGGCTGAGCAGACAAGGTTTAA
GGGCGAACGCATGAACAATCTTGATCTTTCAAAGGGTATGACAGAAATAA
GGCCGAGGGATAAAATCATGTATCATGAAGATAATAATTTTGAGAGCTTT
AACTTCAACTTCAACATGATGAATCTGGACAACAAAGTTGTTGAAAATGT
TACAAAAAGCTCCTTGAGGAATGGTATTTACAATATGAATTCAGTGTACC
AGAAAAACAGTGGGCACAATATGGGAAACCTGATGGTTAATAAGTATGGG
GGTAATAATCTCAGTGTTAAGGAGGCTGAAAACAACAACAATAACAACAA
CAACAACAATGATAGCAACGCAAACAGTGCGCTTGACAAAAGGTTCAAGA
CTTTGCCTGCAACAGAGACACTTCCGAGAAATGAGGTGCTAGGAGGGTAC
ATCTTTGTCTGCAACAACGACACAATGCAGGAAGATTTAAAACGCCAGCT
TTTTGGTTTACCTCCAAGATATAGGGATTCCGTCCGTGCTATAACACCAG
GCTTACCTCTTTTTCTCTACAACTATACTACTCACCAACTGCATGGAATA
TTTGAGGCAACTGGTTTTGGAGGCTCCAACATTGACCCAACAGCCTGGGA
GGACAAAAAGTGTAAAGGGGAATCAAGGTTTCCTGCTCAGGTAAGGATCC
GGGTAAGAAAACTGTGCAAGGCATTGGAAGAAGATGCTTTTAGGCCTGTC
TTGCATCACTACGATGGTCCTAAATTTCGTCTTGAGCTCTCTGTTCCTGA
GACTCTTGATCTAATGGATCTTTGTGAAACAGCGGGCTCTGCTGCATAGG
CATAATATTTTAGCGGAATTGGCAAATGTGGGTAGGATGTGAGCTGCTGG
CTTTTCACCCGATTTCCCTCAGAACCCAAGCCTTTGGTAAAAATCCTGGT
GGTATGAACCTTTCTTGGGAAAATAAGGAAAAGGTGGTGTGATTCACCAA
AAAAAAAATATTTTCCTTCCCAGAAAACCTCTTCCTTGGAACTTTTTTCA
TATTTTTTTTAAAATTTTAAAAAATAAAAGGCAGTCCTCTAAAAAAAACA
AACTTTT
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