DY262905

Overview
NameDY262905
Unique NameDY262905
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1329
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12245 contig Ccv1_Contig12245:156..1485. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY262905 vs. ExPASy Swiss-Prot
Match: YLX5_SCHPO (UNC93-like protein C922.05c OS=Schizosaccharomyces pombe GN=SPAC922.05c PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 2.042e-48
Identity = 97/275 (35.27%), Postives = 151/275 (54.91%), Query Frame = 1
Query:  100 KYSLFRYNSPLVQVSLIGLVCFCCPGMFNALSGMGGGGQLDPXXXXXXXXXXXXXFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFXXXXXXXXXXXXXXXXXXXXXIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAFMCFMSAGAALSLAILPPSRVIRDDGTRCTNIKYSKVSTEAIEILK-LFRNWKMLLLFPAAWASNFFYSYQFNNVNGLMFNLRTRGLNNVFYWGAQMLGS 921
            ++    Y S L Q  ++  VCF CPGMFNALSG+GGGG+++              F+  G   G + N+ G ++TLA G + Y +Y  S L Y H +++ F                     ++ SYP    K  YI++FW IFN+G V+G ++P     H +   SV D TY  F+  M+ G+AL+L ++ P + +++DG      K      E + +++ L++ + +LLLFP  ++SN+F +YQFN+ N   FN+RTR LNN+ YW AQ++GS
Sbjct:   50 RFKSLAYGSALTQTIIVSWVCFLCPGMFNALSGLGGGGEVNADVANDANVALYSTFAGLGFFAGSICNLIGVKLTLAIGGTGYSVYTASLLCYKHVYNRGFVIFGGCYLGLTAGMLWAAQGAVIMSYPREENKARYIAIFWGIFNLGAVIGSIVPLAQTMH-SSVNSVGDGTYAGFIVLMAVGSALALFMVSPEKTVKEDGKFVHIEKSMGWKKELLGLVQTLYKEYWVLLLFPMFFSSNWFTTYQFNDFNLAYFNIRTRSLNNLLYWFAQIMGS 323          
BLAST of DY262905 vs. ExPASy Swiss-Prot
Match: YEL4_SCHPO (Uncharacterized membrane protein C6F6.04c OS=Schizosaccharomyces pombe GN=SPAC6F6.04c PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 4.003e-28
Identity = 81/254 (31.89%), Postives = 120/254 (47.24%), Query Frame = 1
Query:  157 VCFCCPGMFNALSGMG-GGGQLDPXXXXXXXXXXXXX-FSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFXXXXXXXXXXXXXXXXXXXXXIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAFMCFMSAGAALS-LAILPPSRVIRDDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWASNFFYSYQFNNVNGLMFNLRTRGLNNVFYWGAQ 909
            + FCCPG++ A++G+G GGG  D               F+V G  GG +    GPR  LA G + Y +Y G   Y+++   Q F                     I  SY  A +K  +I+  W+I   G  VG  I F +NYH T +  V    YI F+  M+    L+ L I  PS V + DGT   +        E   + +  ++W++L L PA++AS    ++Q +++N   F+LRTR LNNV +W  Q
Sbjct:   34 ILFCCPGIYLAVTGLGAGGGHPDAYHMADVTNSLLYALFTVCGWAGGPILKYLGPRWALALGATGYPIYIGGLWYFDNTGKQGFTIFTGAYEGIAAGLLWASTAYISLSYSCANQKSQFIATQWTILAFGSTVGSFIAFGINYHST-STGVPMAVYIIFIIIMACAVLLAILFIKSPSDVRKSDGTSALSPSNKTFGQELWGLFEAAKDWRLLCLLPASFASQSTIAWQ-SHLNSYYFSLRTRSLNNVLFWVIQ 285          
The following BLAST results are available for this feature:
BLAST of DY262905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
YLX5_SCHPO2.042e-4835.27UNC93-like protein C922.05c OS=Schizosaccharomyces... [more]
YEL4_SCHPO4.003e-2831.89Uncharacterized membrane protein C6F6.04c OS=Schiz... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA10BB06RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262905 ID=DY262905; Name=DY262905; organism=Citrus clementina; type=EST; length=1329bp
ATACTTTTCTCTATCTGATCATCCCCATCCTCTTCCTGTAGCATAACAAT
CATGGGATTTGAAGGCGACGAGGAAGCAGCAGCGATACAAATATCACCAA
AATACTCTCTTTTCAGGTACAACTCACCCTTGGTTCAAGTTAGCCTGATA
GGTCTAGTATGCTTCTGCTGCCCAGGCATGTTCAACGCCCTCTCTGGCAT
GGGAGGCGGGGGGCAACTTGATCCAACAGCCGCTAACAACGCCAACACCG
CTCTCTACACCACCTTTTCCGTATTTGGAATCCTTGGTGGAGGCGTTTAT
AACATCTTTGGACCCCGAGTGACCCTTGCTGCTGGCTGCTCCACCTATGT
TCTCTATGCAGGCTCTTTCCTGTACTATAACCACCACCACGATCAGACCT
TTGCCGTTGTTGCTGGTGCAGTGCTTGGCATCGGCGCAGGCCTTCTCTGG
GCTGGACAAGGCGCAATCATGACTTCGTATCCAACTGCTACCCGTAAAGG
AACCTATATCTCTCTGTTTTGGAGTATCTTTAACATGGGTGGTGTCGTTG
GTGGCCTCATTCCTTTCATCATGAATTATCACCGTACTGATGCTGAAAGT
GTCAATGACAAAACTTACATTGCATTCATGTGTTTTATGTCAGCCGGTGC
TGCTCTTTCACTTGCAATCTTGCCTCCTAGTCGTGTGATTAGAGATGATG
GTACCCGATGCACCAACATTAAGTATTCAAAAGTCTCCACCGAGGCCATT
GAGATTTTGAAACTCTTTCGTAACTGGAAGATGCTTCTTCTCTTCCCTGC
TGCATGGGCTAGCAACTTCTTCTACAGTTACCAGTTCAACAACGTTAATG
GGTTGATGTTCAATTTGAGGACTAGAGGATTGAACAATGTCTTCTACTGG
GGTGCTCAAATGTTGGGATCAGTTGGAATTGGGTACGTGAAGGACTTCCG
TTTCCAAGTCTAAGGACAAAAGGTTTAATTGGAAATGGGATCGTTGCTTT
ATTTGGGACTGGCATTTGGGGGTGGGGGCCTTGCCCGCCAGTTGAATTAC
TCTCATGAAGATCCCCCCTAAAGAATGGGATTTTAAAACTTCCGGGCAAG
ATTTTGGGGGGACCATTTGTTTTGTATTTTCACCCATTGGGTTTCACTGA
GGCCCGGTTTTCAAAGCAGGGTTTATTTGGGGGAATTGGAACCCGTGGGG
TAGAAGAATTTTAGAACCCTCCCACCGAGGTATACCCGGGGGTTTTAATT
AAGGAGGAGGGGCAAAAAAGGGGGGGGGGAGAGCACGTGCCTCCCCCCTT
CTGGGTGGGAAAGTTGTAAAAACACCAAA
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