DY262906

Overview
NameDY262906
Unique NameDY262906
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1322
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY262906 vs. ExPASy Swiss-Prot
Match: M3K1_ARATH (Mitogen-activated protein kinase kinase kinase 1 OS=Arabidopsis thaliana GN=MEKK1 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 5.390e-23
Identity = 47/117 (40.17%), Postives = 62/117 (52.99%), Query Frame = 2 
Query:  140 LPRFLSPREKSAGKAAMDPRKMRQKPRLERRNAAKHIEYDVAXXXXXXXXXXXXXXXXXXXXXXXXX--TSFRIEGVEGEFERICRSLGLSGPEDFAIPAAAWEARKNRSASDLLPR 484
            + R L+  +KS G+   D + +    RLERR+AA++I YD A                           TSFRI G  GE +RI RSLG+SGP+D AI   AWEA K RS+SD++ R
Sbjct:    1 MDRILARMKKSTGRRGGD-KNITPVRRLERRDAARNINYDAASCSSSSAEDLSVSTSSLMTRSLEFPEPTSFRIGGGVGEMDRIYRSLGVSGPDDLAISFDAWEACKKRSSSDVVNR 116

HSP 2 Score: 58.151 bits (139), Expect = 5.390e-23
Identity = 45/145 (31.03%), Postives = 72/145 (49.66%), Query Frame = 1 
Query:  499 LDTLKETVERQSDAAGAVVGELCDRVSDIVRIRNETELTR-----TKLTQVAELSCR-----ASGAGNNDALAVMETTELPPSG-LAESSACCVSSNYVKGIKGVRPPLLKPPPGMRQPVIDNACSTWDILRDFAPKDGI-TPSS 897
            LD +++    +   +G VVG   D ++  V+ ++ +E        T+L+++  L        A G   N  +     T +   G L  ++   V      GIKG+RPP+LKPPP M++P ID+  S+WD L  FAP + +  PSS
Sbjct:  122 LDKVRDQDLSEEGPSGVVVGS--DSMNHKVQGQDLSEAGPSGGIVTELSEIGNLITPVDRLVADGVVENRRVMERTPTIVKSKGYLVPNNVVAVGVGVGGGIKGLRPPVLKPPPAMKRPPIDHRGSSWDFLTHFAPSETVKRPSS 264
The following BLAST results are available for this feature:
BLAST of DY262906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
M3K1_ARATH5.390e-2340.17Mitogen-activated protein kinase kinase kinase 1 O... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA10BB07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262906 ID=DY262906; Name=DY262906; organism=Citrus clementina; type=EST; length=1322bp
CTTCTTCTCATTCAGTTTTCTCGAGAAAGTTATCAAGAAAGATTATACGA
GTCGTTTTGGACACCTGTGAAGGAAGGTTTTTAAGTTTCACCACAGTATG
TTGTAAAATTTGGATGGATTCAGCTCTCAAATGCATCACTTACCTCGATT
TTTAAGTCCTAGGGAGAAATCCGCCGGCAAAGCGGCCATGGACCCGAGGA
AGATGAGGCAAAAACCTCGGCTCGAGCGGCGGAATGCGGCGAAGCACATT
GAGTATGATGTGGCCTCAACATCATCGTCACTTGATGATTCATCGTCTTC
ATCTTCGCTAATTACTCGATCGCTTGACTTGTCCGACAGAACGAGCTTCC
GCATCGAAGGCGTGGAGGGAGAGTTCGAGCGGATTTGTCGGAGCTTAGGC
TTGTCTGGTCCCGAGGATTTCGCGATCCCGGCGGCGGCGTGGGAGGCTCG
AAAAAATCGTTCGGCTTCTGATCTCCTACCGAGGTCGAGTTGAAACAGCT
GGATACTCTGAAAGAAACGGTGGAGAGACAGAGTGACGCAGCGGGTGCGG
TGGTCGGTGAGTTGTGCGATAGGGTTTCGGATATTGTCAGAATTAGGAAC
GAAACTGAGCTGACTCGGACCAAGTTGACTCAGGTAGCGGAATTGTCTTG
TAGGGCTTCTGGTGCCGGTAACAATGATGCTCTTGCAGTTATGGAGACTA
CTGAGTTGCCACCGAGCGGGTTGGCCGAGTCAAGTGCGTGCTGTGTTAGT
AGTAATTATGTGAAAGGAATTAAAGGAGTTCGGCCACCTCTGTTAAAACC
GCCGCCAGGTATGAGGCAACCGGTTATTGATAACGCGTGTTCTACGTGGG
ATATCTTGAGAGATTTTGCACCTAAAGATGGTATAACGCCGTCTTCAGTA
ATGAATGATAGAGCTCTAAGTAGTTCATCTGATGACAAAAATATGAAAAA
GAAGGAGAAAAACTGAACAGGCGATTGGTAAGGAGAAAAAAATGAATGGT
GTTATCAGAAGTCTGTTTATTTACCACGAACAACAAAAAGACTCTTCCAG
TACCCAACCTGACCTAGGTCGAAAATTTTGCCCAATGGGAGGTTTAAGAG
GAATATAAAAAATGGCCGAAGGGGGGACCTTTGGGGAACCGGAATGTTTT
GGATCAAAAAAGAAGGGAATTTTTGAAAAATGGATTTTTTTTTTTGTTTT
TAAGAAAAAATTTGCTTGTTGTTTTTAATGGGGGAACACAGGGGCAAAAA
AAAAAAAAATTTTCTCCCCACTGTTGGCACCCGGGAGAAAAGAAACACCC
TTCTTTTTATTTTGCTGGTTTT
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