DY262907

Overview
NameDY262907
Unique NameDY262907
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1326
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11801 contig Ccv1_Contig11801:272..1597. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY262907 vs. ExPASy Swiss-Prot
Match: CP042_MOUSE (UPF0293 protein C16orf42 homolog OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.322e-39
Identity = 80/148 (54.05%), Postives = 101/148 (68.24%), Query Frame = 1
Query:    1 LRVSSGFGGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPVNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYSKCENSADIISVQNDWLSQQSRVPKVPSD 444
            LR+S  FGG+VLSPVGT  VS  D  L+ + G+AV+DCSWA+L D PF K+R S  RLLP+LVAANPVNYGRPC+LSCVEA +AA  I G  + A +LL KFKWG  FL LNRELL  Y+ C    +++  +  +L+     P+   D
Sbjct:   87 LRLSQRFGGLVLSPVGTEYVSPADRQLVAQSGVAVIDCSWAKLDDTPFQKMRGSHLRLLPYLVAANPVNYGRPCKLSCVEAFAAAFCIVGFSDLAVILLRKFKWGKGFLDLNRELLDKYAACRGPEEVLQAEQGYLASTRDTPEEDID 234          
BLAST of DY262907 vs. ExPASy Swiss-Prot
Match: CP042_HUMAN (UPF0293 protein C16orf42 OS=Homo sapiens GN=C16orf42 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.976e-35
Identity = 73/144 (50.69%), Postives = 96/144 (66.67%), Query Frame = 1
Query:    1 LRVSSGFGGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPVNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYSKCENSADIISVQNDWLSQQSRVPK 432
            LR+   FGG+VLSPVG    S  D  L+ + G+AV+DCSWARL + PF K+R S  RLLP+LVAANPVNYGRP  LSCVEA +A   I G  + A +LL KFKWG  FL LNR+LL  Y+ C +  +++  + ++L+     P+
Sbjct:   87 LRLGHRFGGLVLSPVGKQYASPADRQLVAQSGVAVIDCSWARLDETPFGKMRGSHLRLLPYLVAANPVNYGRPYRLSCVEAFAATFCIVGFPDLAVILLRKFKWGKGFLDLNRQLLDKYAACGSPEEVLQAEQEFLANAKESPQ 230          
BLAST of DY262907 vs. ExPASy Swiss-Prot
Match: YO006_YEAST (UPF0293 protein YOR006C OS=Saccharomyces cerevisiae GN=YOR006C PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.465e-30
Identity = 66/138 (47.83%), Postives = 89/138 (64.49%), Query Frame = 1
Query:    1 LRVSSGFGGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPVNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYSKCENSADIISVQNDWLSQ 414
            LRV   F GIV+SP G   V  +D  ++++ G +VV+CSWARL +VPF K+     RLLP+LVAAN VNYGRP  L+CVEAL+A   I G  + A+ LL  F WG  FL LN+ELL+ Y +C +   +   + +WL +
Sbjct:   75 LRVGQKFQGIVVSPNGKGVVCPDDLEIVEQHGASVVECSWARLEEVPFNKIGGKHERLLPYLVAANQVNYGRPWRLNCVEALAACFAIVGRMDWASELLSHFSWGMGFLELNKELLEIYQQCTDCDSVKRAEEEWLQK 212          
BLAST of DY262907 vs. ExPASy Swiss-Prot
Match: YD84_SCHPO (UPF0293 protein C1F3.04c OS=Schizosaccharomyces pombe GN=SPAC1F3.04c PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.116e-29
Identity = 61/138 (44.20%), Postives = 87/138 (63.04%), Query Frame = 1
Query:    1 LRVSSGFGGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPVNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYSKCENSADIISVQNDWLSQ 414
            LR+   F G+V++P G   VS  D       G +VV+CSWAR+ ++PF ++     RLLP+LVA+NPVNYGRP  L+C EAL+A + I G    A LL+  FKWGH+F  +N ELL  Y++C ++ DI   +  +L +
Sbjct:   56 LRIGQKFRGVVITPNGKVPVSPADKEYFDNGGASVVECSWARIEEIPFSRIGGRCERLLPYLVASNPVNYGRPWRLNCAEALAACMYIVGYPNEARLLMDNFKWGHSFFEVNEELLDIYAQCHDAQDIQEKEKKYLEE 193          
BLAST of DY262907 vs. ExPASy Swiss-Prot
Match: Y1293_METST (UPF0293 protein Msp_1293 OS=Methanosphaera stadtmanae (strain DSM 3091) GN=Msp_1293 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 2.587e-27
Identity = 64/130 (49.23%), Postives = 84/130 (64.62%), Query Frame = 1
Query:   19 FGGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPVNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYSKCENSADIISVQNDWL 408
            +  IVL       VS+ED   I + GL+ +DCSW +L    F        RLLP+LVAANPVNYG+PC LS  EALSAAL I G ++ A  L+  FKWG  F++LN  LL+AYS+ +NS +I+ VQN++L
Sbjct:   39 YNAIVLDAEADKAVSREDREKITKYGLSALDCSWKKLKKSSFNFKSKKNHRLLPFLVAANPVNYGKPCILSSAEALSAALYIVGYKDEARDLMNSFKWGPHFITLNENLLEAYSEAKNSTEIVEVQNEFL 168          
BLAST of DY262907 vs. ExPASy Swiss-Prot
Match: Y638_METKA (UPF0293 protein MK0638 OS=Methanopyrus kandleri GN=MK0638 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 9.830e-27
Identity = 61/129 (47.29%), Postives = 81/129 (62.79%), Query Frame = 1
Query:   22 GGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPVNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYSKCENSADIISVQNDWL 408
            G +VL P     +S+ED      +GL  VDCSW  +        R    R+LP+L+AANPVNYG+PC+LS VEAL+AAL I G    A   + +FKWG AFL LNRE L+AY + E SA+++ VQ ++L
Sbjct:   37 GAVVLDPTVEKALSREDRDAALERGLVAVDCSWEHVHRYFGPLRRRCRHRILPYLIAANPVNYGKPCKLSTVEALAAALYILGFRREAEEFISRFKWGPAFLELNRERLEAYRRAETSAEVVRVQEEFL 165          
BLAST of DY262907 vs. ExPASy Swiss-Prot
Match: Y554_METTH (UPF0293 protein MTH_554 OS=Methanobacterium thermoautotrophicum GN=MTH_554 PE=3 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 1.284e-26
Identity = 57/129 (44.19%), Postives = 84/129 (65.12%), Query Frame = 1
Query:   22 GGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPVNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYSKCENSADIISVQNDWL 408
            G +VL+P     VS ED  ++ R+G+A +DCSW ++     +       R LP+LVAANP NYG+PC LS  EA++A L I G ++ A+ ++  FKWG  FL LNRELL+AYS+ ENS +++ +Q  ++
Sbjct:   39 GALVLNPFSEKAVSPEDRDMVLRRGIAALDCSWKKVKKSSVIFQTARNHRSLPFLVAANPTNYGKPCILSTAEAVAATLYIVGLKDIASDIMSYFKWGPHFLDLNRELLEAYSRAENSLEVVEIQKKFI 167          
BLAST of DY262907 vs. ExPASy Swiss-Prot
Match: Y126_METS3 (UPF0293 protein Msm_0126 OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=Msm_0126 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.677e-26
Identity = 59/132 (44.70%), Postives = 82/132 (62.12%), Query Frame = 1
Query:   22 GGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPVNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYSKCENSADIISVQNDWLSQQ 417
            G +VL+P     VS EDY  + R+G+  +DCSW  +             R LP+L+A NPVNYG+PC LS VEA+SA L I   ++ A  +L  FKWGH FL LN +LL+AYS+ + S D++ VQN++L  +
Sbjct:   39 GAVVLNPFAQKAVSYEDYRYVHRRGVVGLDCSWNEVSSSKKFFSLSKYHRSLPFLIATNPVNYGKPCILSTVEAVSATLYITRFKDEAKDILDGFKWGHTFLELNHDLLEAYSEADTSKDVVRVQNEFLESK 170          
BLAST of DY262907 vs. ExPASy Swiss-Prot
Match: Y708_METJA (UPF0293 protein MJ0708 OS=Methanocaldococcus jannaschii GN=MJ0708 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 5.582e-22
Identity = 50/127 (39.37%), Postives = 78/127 (61.42%), Query Frame = 1
Query:   28 IVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPVNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYSKCENSADIISVQNDWL 408
            ++L+P     +S ED  ++++ G+  +DCSW    ++ F K +    R LP+LVA NP+NYG+PC LS +EA  AAL I   ++ A  L   FKW   F+ +N ELL+ YS  +NS +++ +Q D+L
Sbjct:   45 LILNPYAEKALSPEDKEIVEKFGITALDCSWKE-AELMFKKFKFKNQRSLPFLVACNPINYGKPCMLSTLEAFIAALYITNFKDEAWDLTSCFKWAETFIKVNYELLERYSNAKNSMEVVEIQQDFL 170          
BLAST of DY262907 vs. ExPASy Swiss-Prot
Match: Y088_METBU (UPF0293 protein Mbur_0088 OS=Methanococcoides burtonii (strain DSM 6242) GN=Mbur_0088 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 7.290e-22
Identity = 54/130 (41.54%), Postives = 82/130 (63.08%), Query Frame = 1
Query:   22 GGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDV-PFVKLRCSAPRLLPWLVAANPVNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYSKCENSADIISVQNDWL 408
            G I+L P+    +S  D      + + V+DCSW  + +V P +       R LP+LVA NPVN+GRP +L+ VEA +AAL I G ++ A  +L KF WGH FL +N+E L+ YSK ++S +II +Q++++
Sbjct:   47 GSILLDPMAKQALSPADKH---EQNITVLDCSWETVEEVFPHLMRLHLQHRALPYLVATNPVNFGRPFKLTSVEAFAAALYILGNKKQAEKILSKFNWGHVFLDMNKEPLEDYSKAKDSNEIIKIQSEYM 173          
The following BLAST results are available for this feature:
BLAST of DY262907 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
CP042_MOUSE1.322e-3954.05UPF0293 protein C16orf42 homolog OS=Mus musculus P... [more]
CP042_HUMAN1.976e-3550.69UPF0293 protein C16orf42 OS=Homo sapiens GN=C16orf... [more]
YO006_YEAST1.465e-3047.83UPF0293 protein YOR006C OS=Saccharomyces cerevisia... [more]
YD84_SCHPO2.116e-2944.20UPF0293 protein C1F3.04c OS=Schizosaccharomyces po... [more]
Y1293_METST2.587e-2749.23UPF0293 protein Msp_1293 OS=Methanosphaera stadtma... [more]
Y638_METKA9.830e-2747.29UPF0293 protein MK0638 OS=Methanopyrus kandleri GN... [more]
Y554_METTH1.284e-2644.19UPF0293 protein MTH_554 OS=Methanobacterium thermo... [more]
Y126_METS31.677e-2644.70UPF0293 protein Msm_0126 OS=Methanobrevibacter smi... [more]
Y708_METJA5.582e-2239.37UPF0293 protein MJ0708 OS=Methanocaldococcus janna... [more]
Y088_METBU7.290e-2241.54UPF0293 protein Mbur_0088 OS=Methanococcoides burt... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10BB10RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262907 ID=DY262907; Name=DY262907; organism=Citrus clementina; type=EST; length=1326bp
TTACGGGTGAGTAGTGGGTTTGGGGGAATTGTATTGAGCCCTGTTGGCAC
TCACTGTGTTTCAAAAGAAGATTACAGCTTGATAAAGAGAAAAGGGCTAG
CTGTTGTGGATTGCTCTTGGGCGCGCTTGGGGGATGTGCCATTCGTGAAG
CTGCGCTGTTCTGCTCCTCGCCTGTTACCGTGGCTGGTAGCAGCAAATCC
AGTAAATTATGGCAGACCTTGTGAACTCTCTTGTGTGGAGGCACTATCTG
CTGCTTTGATTATATGTGGGGAAGAGGAAACTGCAAACTTGTTACTAGGC
AAGTTCAAGTGGGGTCATGCGTTCCTTTCCCTCAACAGGGAACTGCTCAA
GGCGTACTCCAAATGTGAAAATAGTGCTGATATAATTTCAGTTCAAAATG
ATTGGCTTTCCCAACAAAGTCGAGTTCCAAAGGTTCCTTCAGATGTAGAA
GGAGTTGACAGCAATGAAGATGAAGCCTCTTCTGATGCCTCCGATGATGT
GCTTCCCCCACTTGAAAAAAATATGAATCACATGAACTTACTTGAAAGTG
ACGGAGAAGAAAGTGAGTAGAGAAGCACGTACATGGAGATATACAAAGAA
AAAGATGCTGATAACTTATCCATCAATGGAGTCATATAAACAGGATTCCT
ATGTACTATGGTATCATATGTCTTTATCCCCCCCCCCCCCCCATATCATA
CGTATTTTTGGTTTTAATGCATTATAATTTTCTTTCTTTTGAATCCTTCT
GCTCTTATCGAGTTGCAGATAAATTCAAGGGTTTTGACTGCCTGTCATAG
TTTTTCTCTTTTACTGATTATGGTGGAGGTCAAAGAGCATTGAGAGAAAG
TTTAAAGATGTATTTTCTTGTTTGTGTAGACGGTTGTATAATACGAGCTC
AGTATTGGTACTAAAATGTATGTCAACTAGTAACTTATATTGTCCTTTTT
TTTTCCTCCTTCATATTAAAACCCGTTTGGGGGCACCTGCCCCCTAAAAT
TGGTCCGGGGGAAGCACCTGCCCCGTGGCAACCCAACCGCCCCCAAACGG
GTCTTTTCTTAACTCAAAACCCCTTTAAAAATTTTAACTGCCGGAACTAA
AGCCCCAGGGAAAGCCCCCCCGCCCGCCCCCCTGAAACCTAAACCCTTGT
GCTTCAAAAAATAAACCTTAATTTTGTGAATAAAAACCCTCCAATTTTGG
GGTGGAAAACCCTCAAAAACCTTTCTCCTCCCAAAAAATATTTAAACCCC
TTTTAAACCCCCTTTTTTTTCTCTTTTGTTTTTTTATTTTTTTTACACTC
AAAAATTTTTTTTTTATATACCCCCC
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