DY262908

Overview
NameDY262908
Unique NameDY262908
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1130
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2375 contig Ccv1_Contig2375:1..1127. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY262908 vs. ExPASy Swiss-Prot
Match: SKIP8_ARATH (F-box protein SKIP8 OS=Arabidopsis thaliana GN=SKIP8 PE=1 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 1.202e-67
Identity = 123/178 (69.10%), Postives = 138/178 (77.53%), Query Frame = 3 
Query:  516 GASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVIPVNGWKAYYAATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQRWADCFQLXXXXXXXXXXXXXXXY*QNMAWGYLKNHIEIDPGPFNMTNEFKFHNG 1049
            G SMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQD + PVNGWK YYA TRA+++VN EFF IIR+R+L AM+R WLN+DYVKCIHASGELFSGYN VIQ W  CF                    +MAW  +K ++ +D GPF +TN F+FHNG
Sbjct:   33 GVSMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDGITPVNGWKEYYATTRAIISVNTEFFTIIRDRALQAMARLWLNSDYVKCIHASGELFSGYNEVIQSWQLCFNWEQGFDFQVHTVRTRIL-TDMAWVTMKAYLNVDGGPFLITNVFEFHNG 209
The following BLAST results are available for this feature:
BLAST of DY262908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SKIP8_ARATH1.202e-6769.10F-box protein SKIP8 OS=Arabidopsis thaliana GN=SKI... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA10BB11RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262908 ID=DY262908; Name=DY262908; organism=Citrus clementina; type=EST; length=1130bp
TTACGAGTCACGAGTTACAAACCTTCCCCTCTCCATCTCTCTGCAACTGC
TAAGTCATTTTTCGCAACAATTTTGGTTTTTTTTTTTCCCAAAACTATTG
CAAAAACAATTTAAAAAAAAAAAGAAAAAGAAAAGAGAAACACAACAACT
TTTACAATTTTTTTTCTGGGTGCCTGGATAAAAGGAAAATACTAGGGTTT
CATGGTTTTAGCAGCTCTTATGTCTTATGAATGGAGATTATCACCTCTAC
TTTTTTCTCGTCCCAATTTGTCATAGCCGCGATTTTCACGATTTTCTCTC
TCCTCCTCGCTGTCCGCACTGCCCGATCAACGAAATCGACAAAACAATCG
GACGGAGCGACCTCTGCCACGTCAGCAACGGCAAGGAAAAAATCTTGCAA
CTGCACGTGTTCCTGCAACGGGCCTGCGGCGGCAAGTGCAGCCGAGCGGG
AGATGTTGGAGGTGGGGAGACACGCCGCGACGGCGGCGACGGCTGTGGTT
GCGGAGCGTGGGAGCGGCGCGTCGATGATGGAGCAGTTAGTGCCGGAGAT
TACGACTCACGCTCTCAGTTATTTGGATTATCCAAGTTTGTGTAGGCTTT
CGATGACCAATTCGTTGATGAGAAAAGCTGCCAATGATGATAACGCCTGG
AAAGCTCTTTATCATAAGGATTTTACTTTGGAGCAAGATAGCGTGATTCC
AGTTAATGGGTGGAAGGCTTACTATGCAGCTACAAGAGCTGTTGTGAATG
TAAATGCAGAATTTTTCAACATTATCAGAGAAAGGTCCCTTCCAGCAATG
AGTCGTTTCTGGCTTAATGCGGATTATGTGAAGTGTATTCATGCATCAGG
AGAGCTCTTTTCAGGGTATAATTCTGTGATTCAGAGGTGGGCAGATTGCT
TTCAATTGGGAACAAGGTGTTGACTTTCAGGTTCAGGATGTACGGGGCTC
GGGTACTGACAAAATATGGCTTGGGGTTACCTGAAAAACCACATTGAAAT
TGACCCTGGACCATTTAACATGACTAATGAATTCAAGTTCCATAATGGGC
CAGGGGAAAAGGGGGGATCACCACAGCTCTGGGAAGCTAAGTTTAAGGGA
AAGGTGGGAACAACAGGGTTGGTGATGGGG
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