DY262909

Overview
NameDY262909
Unique NameDY262909
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1179
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262909 vs. ExPASy Swiss-Prot
Match: UNE12_ARATH (Transcription factor UNE12 OS=Arabidopsis thaliana GN=UNE12 PE=2 SV=2)

HSP 1 Score: 197.208 bits (500), Expect = 1.524e-62
Identity = 123/246 (50.00%), Postives = 145/246 (58.94%), Query Frame = 3
Query:  183 LMANNPNEASS----TDDFLEQILGIPNFXXXXXXXXXXXXXXXXXX--PMMLQLSSGDGSSHISALGGGVSSGYHGQVFPLGLSLEQGKG-GFLKPEEASGSGKRFPEE------HAIKNVFHGQXXXXXXXXXXXXXXXXXXXXXXXXXX-TDPHSXXXXXXXXXXXXXXXXXQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRVGAPGAVAPLVTTDLPL-SSVEDESGEGVRNNQP 875
            + +NNP++  S    +DDF EQILG+PNF                    PMMLQL SG+  SH+  LGG   +G+H Q+FPLGLSL+QGKG GFL+PE   GSGKRF ++       ++K VFHGQ                           TDPHS                 QELVP+VNKTDRAAM+DEIVDYVKFLRLQVKVLSMSR+G  GAVAPLV TD+PL SSVEDE+GEG R  QP
Sbjct:    1 MASNNPHDNLSDQTPSDDFFEQILGLPNFSASSAAGLSGVDGGLGGGAPPMMLQLGSGEEGSHMGGLGGSGPTGFHNQMFPLGLSLDQGKGPGFLRPEGGHGSGKRFSDDVVDNRCSSMKPVFHGQPMQQPPPSAPHQPTSIRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPTVNKTDRAAMIDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLV-TDMPLSSSVEDETGEGGRTPQP 245          

HSP 2 Score: 65.4698 bits (158), Expect = 1.524e-62
Identity = 33/42 (78.57%), Postives = 36/42 (85.71%), Query Frame = 1
Query:  880 EWSNDGTERQVAKLMEKNVGAAMQFLSIKALWLMAISLATAI 1005
            +WSNDGTERQVAKLME+NVGAAMQ L  KAL +M ISLA AI
Sbjct:  249 KWSNDGTERQVAKLMEENVGAAMQLLQSKALCMMPISLAMAI 290          
BLAST of DY262909 vs. ExPASy Swiss-Prot
Match: BH007_ARATH (Transcription factor bHLH7 OS=Arabidopsis thaliana GN=BHLH7 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.247e-55
Identity = 116/239 (48.54%), Postives = 138/239 (57.74%), Query Frame = 3
Query:  186 MANNPN-------EASSTDDFLEQILGIPNFXXXXXXXXXXXXXXXXXXPMMLQLSSGD--GSSHISALGGGVSSGYHGQVFPLGLSLEQGKG-GFLKPEEASGSGKRFPEE------HAIKNVFHGQXXXXXXXXXXXXXXXXXXXXXXXXXX-TDPHSXXXXXXXXXXXXXXXXXQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRVGAPGAVAPLVTTDLPL-SSVEDES 848
            MANN N       + S TDDF EQILG+ NF                  PMMLQL SG+    +H+ A+GGG   G+H Q+FPLGLSL+QGKG GFLKP+E   +GKRF ++       ++K +FHGQ                           TDPHS                 QELVP+VNKTDRAAM+DEIVDYVKFLRLQVKVLSMSR+G  GAVAPLV T++PL SSVEDE+
Sbjct:    1 MANNNNIPHDSISDPSPTDDFFEQILGLSNFSGSSGSGLSGIGGVGPP-PMMLQLGSGNEGNHNHMGAIGGGGPVGFHNQMFPLGLSLDQGKGHGFLKPDE---TGKRFQDDVLDNRCSSMKPIFHGQPMSQPAPPMPHQQSTIRPRVRARRGQATDPHSIAERLRRERIAERIRSLQELVPTVNKTDRAAMIDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLV-TEMPLSSSVEDET 234          

HSP 2 Score: 65.4698 bits (158), Expect = 1.247e-55
Identity = 33/42 (78.57%), Postives = 36/42 (85.71%), Query Frame = 1
Query:  880 EWSNDGTERQVAKLMEKNVGAAMQFLSIKALWLMAISLATAI 1005
            +WSNDGTERQVAKLME+NVGAAMQ L  KAL +M ISLA AI
Sbjct:  240 KWSNDGTERQVAKLMEENVGAAMQLLQSKALCIMPISLAMAI 281          
BLAST of DY262909 vs. ExPASy Swiss-Prot
Match: BH082_ARATH (Transcription factor bHLH82 OS=Arabidopsis thaliana GN=BHLH82 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.685e-21
Identity = 38/68 (55.88%), Postives = 47/68 (69.12%), Query Frame = 3
Query:  600 TDPHSXXXXXXXXXXXXXXXXXQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRVGAPGAVAP 803
            TDPHS                 QELVP+ NKTD+A+MLDEI++YV+FL+LQVKVLSMSR+G  G+V P
Sbjct:  107 TDPHSIAERLRRERIAERMKSLQELVPNTNKTDKASMLDEIIEYVRFLQLQVKVLSMSRLGGAGSVGP 174          

HSP 2 Score: 46.9802 bits (110), Expect = 2.685e-21
Identity = 24/36 (66.67%), Postives = 31/36 (86.11%), Query Frame = 1
Query:  898 TERQVAKLMEKNVGAAMQFLSIKALWLMAISLATAI 1005
            TE++VAKLME+++G+AMQ+L  K L LM ISLATAI
Sbjct:  214 TEQRVAKLMEEDMGSAMQYLQGKGLCLMPISLATAI 249          
BLAST of DY262909 vs. ExPASy Swiss-Prot
Match: BH066_ARATH (Transcription factor bHLH66 OS=Arabidopsis thaliana GN=BHLH66 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.527e-21
Identity = 38/71 (53.52%), Postives = 48/71 (67.61%), Query Frame = 3
Query:  600 TDPHSXXXXXXXXXXXXXXXXXQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRVGAPGAVAPLVT 812
            TDPHS                 QELVP+ NKTD+A+MLDEI+DYVKFL+LQVKVLSMSR+G   +V+  ++
Sbjct:  146 TDPHSIAERLRRERIAERMKALQELVPNGNKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAASVSSQIS 216          

HSP 2 Score: 48.9062 bits (115), Expect = 4.527e-21
Identity = 28/43 (65.12%), Postives = 33/43 (76.74%), Query Frame = 1
Query:  886 SNDG---TERQVAKLMEKNVGAAMQFLSIKALWLMAISLATAI 1005
            SND    TE QVAKLME+++G+AMQ+L  K L LM ISLATAI
Sbjct:  239 SNDSVTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAI 281          
BLAST of DY262909 vs. ExPASy Swiss-Prot
Match: BH069_ARATH (Transcription factor bHLH69 OS=Arabidopsis thaliana GN=BHLH69 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 1.300e-20
Identity = 42/86 (48.84%), Postives = 53/86 (61.63%), Query Frame = 3
Query:  600 TDPHSXXXXXXXXXXXXXXXXXQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRVGAPGAVAPLVTTDLPLSSVEDESGEG 857
            TDPHS                 QELVP+ NKTD+A+MLDEI+DYVKFL+LQVKVLSMSR+G   + +  ++ D    S E+ S  G
Sbjct:  138 TDPHSIAERLRRERIAERMKSLQELVPNGNKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAASASSQISEDAG-GSHENTSSSG 222          

HSP 2 Score: 46.595 bits (109), Expect = 1.300e-20
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 1
Query:  898 TERQVAKLMEKNVGAAMQFLSIKALWLMAISLATAI 1005
            TE QVAKLME+++G+AMQ+L  K L LM ISLAT I
Sbjct:  227 TEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATTI 262          
The following BLAST results are available for this feature:
BLAST of DY262909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
UNE12_ARATH1.524e-6250.00Transcription factor UNE12 OS=Arabidopsis thaliana... [more]
BH007_ARATH1.247e-5548.54Transcription factor bHLH7 OS=Arabidopsis thaliana... [more]
BH082_ARATH2.685e-2155.88Transcription factor bHLH82 OS=Arabidopsis thalian... [more]
BH066_ARATH4.527e-2153.52Transcription factor bHLH66 OS=Arabidopsis thalian... [more]
BH069_ARATH1.300e-2048.84Transcription factor bHLH69 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA10BB12RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262909 ID=DY262909; Name=DY262909; organism=Citrus clementina; type=EST; length=1179bp
CCAACCAGTAGAGGGGAAAAAGAGGAAAAAGAAAAGAGAAAAAAAAAAAA
AAGTTAAGCTAAGCCAAGTGAAGTTCGAAACTTTGATAGAAATCCGTCTT
TCTCGAACATTTAATTTTTTTTTTCATGTGGGTACTTTCATAACTCGTTG
ACACAACTCACTCACGACTTGGCCGAGTCAAACTCATGGCGAACAACCCG
AACGAAGCCTCCTCGACCGACGATTTCCTCGAGCAAATCCTCGGAATTCC
TAATTTCGGTTCTGCGGAGTCTGGCTTGGCGGCTAGCGATGGCGGCTTGG
CGGCAGGCTCGCCGATGATGCTGCAGTTGAGCTCCGGCGACGGCTCCAGC
CACATCTCGGCTCTCGGAGGCGGAGTAAGCAGTGGGTATCATGGGCAGGT
GTTTCCGTTAGGCTTGAGCTTGGAGCAAGGTAAAGGAGGGTTTTTGAAGC
CCGAGGAAGCCTCTGGAAGCGGAAAGCGGTTTCCTGAAGAACATGCTATA
AAAAATGTTTTTCATGGCCAACCACTGCCCTCACCTGTTCCTGCAGCTCC
ACATCCACCAGCAATGCGCCCCAGGGTGCGGGCTAGGAGAGGACAGGCCA
CTGATCCACACAGCATTGCTGAACGTCTACGAAGAGAAAGAATAGCAGAA
AGAATTAGGGCACTGCAGGAGCTGGTCCCTAGTGTCAACAAGACTGATCG
AGCAGCCATGCTTGATGAAATTGTGGATTATGTGAAGTTTTTGAGGCTTC
AAGTGAAGGTTTTGAGTATGAGTAGAGTGGGCGCTCCTGGCGCTGTGGCT
CCACTGGTAACAACGGACCTCCCACTATCATCAGTCGAGGATGAATCTGG
TGAAGGGGTAAGAAACAATCAGCCTGGGAGAATGGTCAAATGATGGCACA
GAGCGACAGGTAGCTAAGCTCATGGAAAAAAATGTTGGGGCTGCCATGCA
GTTCCTTTCAATCAAAGCTCTTTGGCTAATGGCGATTTCACTGGCCACAG
CAATTTAACCATTCCCAACAACCGGAAACCCCTAATCTTGTGAAGCCGGA
AATAAACCCTCCTTCGTAAAATTTAAAAAAAGGTAATCCTTCCCGGGGTC
CGGGGCCAATCCCATCCAAATCCAATCCCGAAAAACCCCCAGGGGGCCCC
CCGCCGGATTTTTTTCCCTTTTTACCCCC
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