DY262912

Overview
NameDY262912
Unique NameDY262912
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1281
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY262912_ssr112 microsatellite DY262912_ssr112:112..123. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY262912 vs. ExPASy Swiss-Prot
Match: CH60B_ARATH (Chaperonin CPN60-like 1, mitochondrial OS=Arabidopsis thaliana GN=At2g33210 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 2.163e-30
Identity = 61/116 (52.59%), Postives = 82/116 (70.69%), Query Frame = 3
Query:  483 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKKVSN 830
            D R+G ++A+D +V NL S A+ I++ E+IA  GT +ANGDR IGELIAKA E      +  + D KT  + EL++  GM +DRGY+SPYFITN KT++C L DP I+I EKK+SN
Sbjct:  146 DLRRGIKLAVDTVVTNLQSRARMISTSEEIAQVGTISANGDREIGELIAKAMETVGKEGVITIQDGKTLFN-ELEVVEGMKIDRGYISPYFITNPKTQKCELEDPLILIHEKKISN 260          

HSP 2 Score: 41.2022 bits (95), Expect = 2.163e-30
Identity = 26/74 (35.14%), Postives = 42/74 (56.76%), Query Frame = 1
Query:  913 ENDLLASLVLNEVATATKACVKKLLGFGESKKANLSGIGQNPVMESHEQEKILNANLLAMLKKYGNQRIKRVTL 1134
            E+D LA+L+LN++    K C  K  GFGE++KANL  +      +   +E  +N + +  L  +GN   K+VT+
Sbjct:  286 ESDALATLILNKLRANIKVCAVKAPGFGENRKANLHDLAALTGAQVITEELGMNLDNID-LSMFGN--CKKVTV 356          
BLAST of DY262912 vs. ExPASy Swiss-Prot
Match: CH60A_ARATH (Chaperonin CPN60, mitochondrial OS=Arabidopsis thaliana GN=CPN60 PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 2.817e-30
Identity = 63/116 (54.31%), Postives = 82/116 (70.69%), Query Frame = 3
Query:  483 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKKVSN 830
            D R+G  MA+DA+V NL S A+ I++ E+IA  GT +ANG+R IGELIAKA EK     +  + D KT  + EL++  GM LDRGY SPYFITN KT++C L DP I+I EKK+S+
Sbjct:  145 DLRRGISMAVDAVVTNLKSKARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIQDGKTLFN-ELEVVEGMKLDRGYTSPYFITNQKTQKCELDDPLILIHEKKISS 259          

HSP 2 Score: 41.2022 bits (95), Expect = 2.817e-30
Identity = 18/38 (47.37%), Postives = 26/38 (68.42%), Query Frame = 1
Query:  913 ENDLLASLVLNEVATATKACVKKLLGFGESKKANLSGI 1026
            E+D LA+L+LN++    K C  K  GFGE++KANL  +
Sbjct:  285 ESDALATLILNKLRAGIKVCAIKAPGFGENRKANLQDL 322          
BLAST of DY262912 vs. ExPASy Swiss-Prot
Match: CH61_MAIZE (Chaperonin CPN60-1, mitochondrial OS=Zea mays GN=CPN60I PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 2.327e-29
Identity = 62/116 (53.45%), Postives = 82/116 (70.69%), Query Frame = 3
Query:  483 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKKVSN 830
            D R+G  MA+DA+V NL   A+ I++ E+IA  GT +ANG+R IGELIAKA EK     +  +AD  T  + EL++  GM LDRGY+SPYFITN KT++C L DP I+I +KKV+N
Sbjct:  148 DLRRGISMAVDAVVTNLKGMARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIADGNTLYN-ELEVVEGMKLDRGYISPYFITNSKTQKCELEDPLILIHDKKVTN 262          

HSP 2 Score: 37.7354 bits (86), Expect = 2.327e-29
Identity = 15/38 (39.47%), Postives = 25/38 (65.79%), Query Frame = 1
Query:  913 ENDLLASLVLNEVATATKACVKKLLGFGESKKANLSGI 1026
            E++ L +L++N++    K C  K  GFGE++KANL  +
Sbjct:  288 ESEALGTLIINKLRAGIKVCAVKAPGFGENRKANLQDL 325          
BLAST of DY262912 vs. ExPASy Swiss-Prot
Match: CH61_CUCMA (Chaperonin CPN60-1, mitochondrial OS=Cucurbita maxima GN=CPN60-1 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.327e-29
Identity = 61/116 (52.59%), Postives = 83/116 (71.55%), Query Frame = 3
Query:  483 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKKVSN 830
            D R+G  MA+D++V NL S A+ I++ E+IA  GT +ANG+R IGELIAKA EK     +  ++D KT  + EL++  GM LDRGY+SPYFITN K ++C L DP I+I EKK+S+
Sbjct:  146 DLRRGISMAVDSVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITISDGKTMDN-ELEVVEGMKLDRGYISPYFITNQKNQKCELDDPLIIIYEKKISS 260          

HSP 2 Score: 37.3502 bits (85), Expect = 2.327e-29
Identity = 16/38 (42.11%), Postives = 25/38 (65.79%), Query Frame = 1
Query:  913 ENDLLASLVLNEVATATKACVKKLLGFGESKKANLSGI 1026
            E++ LA+L+LN++    K C  K  GFGE++KA L  +
Sbjct:  286 ESEALATLILNKLRAGIKVCAIKAPGFGENRKAGLQDL 323          
BLAST of DY262912 vs. ExPASy Swiss-Prot
Match: CH62_CUCMA (Chaperonin CPN60-2, mitochondrial OS=Cucurbita maxima GN=CPN60-2 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.944e-29
Identity = 61/116 (52.59%), Postives = 83/116 (71.55%), Query Frame = 3
Query:  483 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKKVSN 830
            D R+G  MA+D++V NL S A+ I++ E+IA  GT +ANG+R IGELIAKA EK     +  ++D KT  + EL++  GM LDRGY+SPYFITN K ++C L DP I+I EKK+S+
Sbjct:  146 DLRRGISMAVDSVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITISDGKTLFN-ELEVVEGMKLDRGYISPYFITNQKNQKCELDDPLILIHEKKISS 260          

HSP 2 Score: 38.5058 bits (88), Expect = 3.944e-29
Identity = 17/35 (48.57%), Postives = 24/35 (68.57%), Query Frame = 1
Query:  913 ENDLLASLVLNEVATATKACVKKLLGFGESKKANL 1017
            E+D LA+L+LN++    K C  K  GFGE++KA L
Sbjct:  286 ESDALATLILNKLRAGIKVCAIKAPGFGENRKAGL 320          
BLAST of DY262912 vs. ExPASy Swiss-Prot
Match: CH62_MAIZE (Chaperonin CPN60-2, mitochondrial OS=Zea mays GN=CPN60II PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 8.704e-29
Identity = 61/116 (52.59%), Postives = 81/116 (69.83%), Query Frame = 3
Query:  483 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKKVSN 830
            D R+G  MA+DA+V NL   A+ I++ E+IA  GT +ANG+R IGELIAKA EK     +  +AD  T  + EL++  GM LDRGY+SPYFITN K ++C L DP I+I +KKV+N
Sbjct:  148 DLRRGISMAVDAVVTNLKGMARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIADGNTLYN-ELEVVEGMKLDRGYISPYFITNSKAQKCELEDPLILIHDKKVTN 262          

HSP 2 Score: 37.7354 bits (86), Expect = 8.704e-29
Identity = 15/38 (39.47%), Postives = 25/38 (65.79%), Query Frame = 1
Query:  913 ENDLLASLVLNEVATATKACVKKLLGFGESKKANLSGI 1026
            E++ L +L++N++    K C  K  GFGE++KANL  +
Sbjct:  288 ESEALGTLIINKLRAGIKVCAVKAPGFGENRKANLQDL 325          
BLAST of DY262912 vs. ExPASy Swiss-Prot
Match: CH60_BRANA (Chaperonin CPN60, mitochondrial OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.152e-24
Identity = 55/118 (46.61%), Postives = 77/118 (65.25%), Query Frame = 3
Query:  483 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIA--KAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKKVSN 830
            D R+G ++A+D +V  L S A+ I++ E+IA  GT +ANGDR   EL+   KA E      +  + D KT  + EL++  GM +DRGY+SPYFITN K ++C L DP I+I EKK+SN
Sbjct:  149 DLRRGIKLAVDTVVTKLKSRARMISTSEEIAQVGTISANGDR---ELVTDCKAMESVGKEGVITIQDGKTLFN-ELEVVEGMKIDRGYISPYFITNQKNQKCELEDPLILIHEKKISN 262          

HSP 2 Score: 40.817 bits (94), Expect = 1.152e-24
Identity = 25/86 (29.07%), Postives = 41/86 (47.67%), Query Frame = 1
Query:  913 ENDLLASLVLNEVATATKACVKKLLGFGESKKANLSGIGQNPVMESHEQEKILNANL--LAMLKKYGNQRIKRVTLLLKGWQRNEK 1164
            E+D LA L+LN++    K C  K  GFGE++KAN+  +      +   +E  +N     L+ML       + +   +  GW   +K
Sbjct:  288 ESDALAVLILNKLRAGIKVCAVKAPGFGENRKANMHDLATLTGAQVITEELGMNLEKIDLSMLGNCKKITVSKDDTVFLGWGAGDK 373          
BLAST of DY262912 vs. ExPASy Swiss-Prot
Match: CH60C_ARATH (Chaperonin CPN60-like 2, mitochondrial OS=Arabidopsis thaliana GN=At3g13860 PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 7.284e-24
Identity = 57/118 (48.31%), Postives = 78/118 (66.10%), Query Frame = 3
Query:  477 VPDQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKKVSN 830
            V D R G  MAI A+V +L S A  I++ E+I    T +ANG+R IGELIA+A EK     +  +AD  T  + EL++  GM L RGY+SPYFIT+ KT++C L +P I+I EKK+S+
Sbjct:  143 VMDLRVGINMAIAAVVSDLKSRAVMISTPEEITQVATISANGEREIGELIARAMEKVGKEGVITVADGNTLDN-ELEVVEGMKLARGYISPYFITDEKTQKCELENPIILIHEKKISD 259          

HSP 2 Score: 34.6538 bits (78), Expect = 7.284e-24
Identity = 16/38 (42.11%), Postives = 24/38 (63.16%), Query Frame = 1
Query:  913 ENDLLASLVLNEVATATKACVKKLLGFGESKKANLSGI 1026
            E+D LA L+LN+     K C  K  GFG+++KA+L  +
Sbjct:  285 ESDALAMLILNKHHGGLKVCAIKAPGFGDNRKASLDDL 322          
BLAST of DY262912 vs. ExPASy Swiss-Prot
Match: CH60_PROA2 (60 kDa chaperonin OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=groL PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 4.033e-21
Identity = 53/135 (39.26%), Postives = 80/135 (59.26%), Query Frame = 3
Query:  483 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKKVSNCVFFDLLTEIGPVRDIMAQ 887
            D ++G  +A+  +V  L   ++ IT  ++IA  GT +AN D  IGELIA+A +K   + +  + + K   + EL +  GM  DRGYLSPYF+TN +  +  L DPYI+I +KK+SN      + E+ PV +  AQ
Sbjct:  115 DLKRGIDLAVKDVVAELREISRDITGKKEIAQVGTISANNDPEIGELIAEAMDKVGKDGVITVEEAKGMDT-ELTVVEGMQFDRGYLSPYFVTNSEKMDADLEDPYILIYDKKISN------MKELLPVLEKTAQ 242          

HSP 2 Score: 34.2686 bits (77), Expect = 4.033e-21
Identity = 20/60 (33.33%), Postives = 31/60 (51.67%), Query Frame = 1
Query:  913 ENDLLASLVLNEVATATKACVKKLLGFGESKKANLSGIG---QNPVMESHEQEKILNANL 1083
            E + LA+LV+N++    K C  K  GFG+ +KA L  I       V+   +  K+ NA +
Sbjct:  255 EGEALATLVVNKLRGTLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISEEKGYKLENATI 314          
BLAST of DY262912 vs. ExPASy Swiss-Prot
Match: CH60_CHLCH (60 kDa chaperonin OS=Chlorobium chlorochromatii (strain CaD3) GN=groL PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.825e-21
Identity = 53/135 (39.26%), Postives = 81/135 (60.00%), Query Frame = 3
Query:  483 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKKVSNCVFFDLLTEIGPVRDIMAQ 887
            D ++G   A+  +V  L + ++ I+S ++IA  GT +AN D  IGELIA+A EK   + +  + + K   + EL++  GM  DRGYLSPYF+TN  T E  L +P I+I +KK+SN      + E+ P+ +  AQ
Sbjct:  115 DLKRGIDRAVKEVVAELKAISRSISSKKEIAQVGTISANNDPEIGELIAEAMEKVGKDGVITVEEAKGMET-ELKVVEGMQFDRGYLSPYFVTNSDTMEAELDNPLILIYDKKISN------MKELLPILEKSAQ 242          

HSP 2 Score: 35.039 bits (79), Expect = 6.825e-21
Identity = 21/60 (35.00%), Postives = 31/60 (51.67%), Query Frame = 1
Query:  913 ENDLLASLVLNEVATATKACVKKLLGFGESKKANLSGIG---QNPVMESHEQEKILNANL 1083
            E + LA+LV+N++    K C  K  GFG+ +KA L  I       V+   +  K+ NA L
Sbjct:  255 EGEALATLVVNKLRGTLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISEEKGYKLENATL 314          
The following BLAST results are available for this feature:
BLAST of DY262912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60B_ARATH2.163e-3052.59Chaperonin CPN60-like 1, mitochondrial OS=Arabidop... [more]
CH60A_ARATH2.817e-3054.31Chaperonin CPN60, mitochondrial OS=Arabidopsis tha... [more]
CH61_MAIZE2.327e-2953.45Chaperonin CPN60-1, mitochondrial OS=Zea mays GN=C... [more]
CH61_CUCMA2.327e-2952.59Chaperonin CPN60-1, mitochondrial OS=Cucurbita max... [more]
CH62_CUCMA3.944e-2952.59Chaperonin CPN60-2, mitochondrial OS=Cucurbita max... [more]
CH62_MAIZE8.704e-2952.59Chaperonin CPN60-2, mitochondrial OS=Zea mays GN=C... [more]
CH60_BRANA1.152e-2446.61Chaperonin CPN60, mitochondrial OS=Brassica napus ... [more]
CH60C_ARATH7.284e-2448.31Chaperonin CPN60-like 2, mitochondrial OS=Arabidop... [more]
CH60_PROA24.033e-2139.2660 kDa chaperonin OS=Prosthecochloris aestuarii (s... [more]
CH60_CHLCH6.825e-2139.2660 kDa chaperonin OS=Chlorobium chlorochromatii (s... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10BC03RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262912 ID=DY262912; Name=DY262912; organism=Citrus clementina; type=EST; length=1281bp
ATCGAATTCCTCTGTCCTTTCTGCGCAACAAAATCACAAACGATGTTGCG
CCATGCCTCTAACCTCGCCTCCAAAGTCAGGTTGCTTGATAACAATTTTC
AGCCGGTGATGATTCATTCATTCATTTATTAGTGTTTTTTGTTTCCTTTT
TTCAAATAATAATAACTAATTCTGGCTTGGCTTATTCAGTTCAATTGATT
AATTTCGTTGAGTTAATTTCGTTGAATTTAATTCTGTGTCAGGTTCATTT
AACTCGGAGCAGACAGTATACCGCGGCGGAAGTCACTAAAAGATTTTTGG
ATTGTGAAACATCTTCTGGATTTTCTTAATTAAGAAATTAGATTTGCTGT
GAATGGGAATGGAGTTAATTAATGGATACAGATCATCTGATCAAATTCAA
TTGACATCTATCTTCTGTCTGCAGGCACCAATTCTAAAGTTAAAAGGGAG
AATTTTATATGCGGGAGGATGCGGAAGTGCCAGACCAAAGACAAGGGGCT
AGAATGGCAATTGATGCACTTGTGGGAAATTTATACAGCACAGCACAACC
CATCACATCATTCGAACAAATAGCCCTGTTTGGAACGGCTGCAGCAAATG
GTGACAGAGTGATTGGCGAGCTCATAGCCAAGGCTTTTGAGAAAGGTTGG
GGAAACAATCTTCATGTGTTAGCTGATCGGAAAACACCACCCAGTATTGA
ACTTCAGTTGTATTGGGGAATGACCCTAGACAGGGGCTATTTGTCACCTT
ACTTCATCACCAATCATAAGACGAAAGAATGTGTTTTACGAGATCCTTAT
ATCATGATCCTTGAGAAAAAGGTTTCGAACTGCGTCTTCTTTGACTTATT
GACAGAGATTGGACCAGTTAGAGATATAATGGCACAGATGTACTGATCAT
TGCTGAAGATATGAAAATGATCTTCTAGCAAGTCTTGTCTTAAATGAAGT
GGCTACAGCAACCAAAGCTTGTGTCAAAAAACTTCTTGGATTTGGAGAAA
GTAAGAAAGCTAACCTTTCGGGAATTGGCCAAAATCCCGTTATGGAAAGT
CATGAACAGGAAAAGATTTTAAATGCTAATCTTTTGGCCATGCTGAAAAA
ATACGGGAACCAAAGGATAAAACGGGTTACCCTTCTTTTGAAGGGTTGGC
AAAGGAACGAAAAAATTTTTTTAAGGGGAAAAATTTCAAGGGGAAAAATT
TAAAAAATTTTTCCTTAAAAAAAATTTTTAAAAACACACCCTTTTATCCC
TCGCCTTTCCTTTATAAAAGAGAAATTGGGG
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