DY262919

Overview
NameDY262919
Unique NameDY262919
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1297
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262919 vs. ExPASy Swiss-Prot
Match: KDSB_PARUW (3-deoxy-manno-octulosonate cytidylyltransferase OS=Protochlamydia amoebophila (strain UWE25) GN=kdsB PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 2.940e-52
Identity = 116/239 (48.54%), Postives = 150/239 (62.76%), Query Frame = 1
Query:  259 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEK--KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDASETLRR 966
            +++GIIPAR+ S+RF GKPL +ILGK ++QRT+E S  A+ L  L+VATDDE+I E  + F   V+MTSE C  GT+R  E L    +      +VNIQGDEP + P  I+  V+AL   P    ST VT L   E+A + + VKCV+D  G A+YFSR LIP NK+        Y  HLG+  Y  +F+  Y  L  TPLQLEEDLEQLKVLE+GY++KV  VD    GVD  E + +
Sbjct:    9 QIIGIIPARYGSTRFPGKPLASILGKTLLQRTYENSLRASALSDLIVATDDERIFEHVRSFNGKVVMTSEQCPTGTDRLAEVLSLYPEWMHATAIVNIQGDEPCLNPLTINLAVQALVNDPQGQVSTIVTPLLDEEEAKNSSIVKCVMDQQGNALYFSRALIPSNKTNSFKNGAIYFRHLGLYVYRPSFIINYQKLPSTPLQLEEDLEQLKVLEHGYRIKVAIVDQANIGVDTPEDIHK 247          
BLAST of DY262919 vs. ExPASy Swiss-Prot
Match: KDSB_FUSNN (3-deoxy-manno-octulosonate cytidylyltransferase OS=Fusobacterium nucleatum subsp. nucleatum GN=kdsB PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 5.738e-48
Identity = 110/245 (44.90%), Postives = 151/245 (61.63%), Query Frame = 1
Query:  259 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDASETLRR*IIYA*EN 990
            + +GIIPAR++S+R EGKPL  I G  MI+  ++R+K  + LD L+VATDDE+I      FG   IMTS++  NGT R  E  +K+ + YD ++NIQGDEPLIE E+I+ +++  +   D   +T    L   E+  +PN VK V D + YAIYFSR +IPY +    N    Y  H+GI  Y  +F+  Y  +  TPL+  E LEQL+VLENGYK+KV++  H   GVD  E L + I Y  EN
Sbjct:    2 KFLGIIPARYSSTRLEGKPLKMIEGHTMIEWVYKRAK-KSNLDSLIVATDDERIYNEVINFGGQAIMTSKNHTNGTSRIAEVCEKMTE-YDTIINIQGDEPLIEYEMINSLIETFKENKDLKMATLKHKLLNKEEIKNPNNVKVVCDKNDYAIYFSRSVIPYPRK---NGNISYFKHIGIYGYKRDFVIEYSKMLATPLEEIESLEQLRVLENGYKIKVLETTHSLIGVDTQENLEQVINYIKEN 241          
BLAST of DY262919 vs. ExPASy Swiss-Prot
Match: KDSB_PARD8 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=kdsB PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 3.719e-47
Identity = 105/244 (43.03%), Postives = 149/244 (61.07%), Query Frame = 1
Query:  259 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPED-----AFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVN---PQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDASETLRR 966
            + +GIIPAR+AS+RF GKPL ++ GKPMIQR +E+ K    LD + VATDD +I    + FG  V+MTS+  R+GT+RC EA QK+ + YD++VNIQGDEP I PE I   +K   A  +   +T V   + +D      F+PN  K V++ +  A+YFSR +IPY +  K     P   +  H+G+ +Y +  LK    L  + L+L E LEQL+ LENGYK+KV   + E  G+D  E + +
Sbjct:    3 KFIGIIPARYASTRFPGKPLADMNGKPMIQRVYEQVK--DVLDSVCVATDDIRIENAVKAFGGQVVMTSDQHRSGTDRCYEAYQKIGEGYDVIVNIQGDEPFIHPEQIQ-TIKTCFADANTQIATLVKPFRSDDDFESSLFNPNSPKVVLNKNNEAMYFSRSIIPYIRGKKYTEWLPSHTFYKHIGLYAYRAQVLKEITQLPQSALELAESLEQLRWLENGYKIKVGITEQETIGIDTPEDMEK 243          
BLAST of DY262919 vs. ExPASy Swiss-Prot
Match: KDSB_CHLMU (3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia muridarum GN=kdsB PE=3 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 4.858e-47
Identity = 105/220 (47.73%), Postives = 141/220 (64.09%), Query Frame = 1
Query:  256 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPN-RVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV 912
            S+ VGI+PAR+ SSRF GKPL  ILGK +IQR++E +  + +LD +VVATDD++I +   +FG   +MT ESC NGTER  EA+ +   + +IVVNIQGDEP + P IIDG+V+ L+  P    +T VT     DA   N +VKCV D  G A+YFSR +IP N         P  LH+G+ ++   FL  Y  + P+ L L EDLEQL+VLE+G  + V
Sbjct:    7 SKRVGILPARWGSSRFPGKPLAKILGKTLIQRSYENALTSRSLDCVVVATDDQRIFDHVVEFGGLCVMTCESCANGTERVEEAVSQHFPQAEIVVNIQGDEPCLSPSIIDGLVEMLEGNPAIDIATPVTETVDPDAILTNHKVKCVFDKTGRALYFSRSVIPNN----FKRSTPIYLHIGVYAFRRAFLSEYVKIPPSSLSLAEDLEQLRVLESGRSIYV 222          
BLAST of DY262919 vs. ExPASy Swiss-Prot
Match: KDSB_CHLFF (3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydophila felis (strain Fe/C-56) GN=kdsB PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 1.082e-46
Identity = 99/240 (41.25%), Postives = 149/240 (62.08%), Query Frame = 1
Query:  250 FRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD-AVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDASETLRR 966
            F S+ VG++PAR+ S RF GKPL NILGK +IQRT+E    +TTLD +VVATD+++I +    FG D +MTS  C NGTER  EA+ +   + +I+VNIQGDEP ++  ++D +V+ L+ +P+  V + A  +    +     +VKCV D +G A+YFSR  IP+     +  + P  LH+G+ ++  N L  Y    PT L   EDLEQL++LE+G  + +  V+ ++  VD  E + +
Sbjct:    6 FASKKVGVLPARWGSVRFTGKPLANILGKSLIQRTYENISQSTTLDKVVVATDNQRIMDHVLDFGGDCVMTSPECANGTERTAEAISRYFPEAEIIVNIQGDEPCLQHTVVDTLVRKLEESPEIQVVTPAAKTTDSHEILTNQKVKCVFDKNGKALYFSRSPIPH----ILKKETPIYLHIGVYAFRRNALFSYIESTPTSLSQAEDLEQLRILEHGGSIHICVVEAKSPSVDYPEDINK 241          
BLAST of DY262919 vs. ExPASy Swiss-Prot
Match: KDSB_CHLTB (3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=kdsB PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 1.846e-46
Identity = 101/220 (45.91%), Postives = 140/220 (63.64%), Query Frame = 1
Query:  256 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV 912
            S+ VGI+P+R+ SSRF GKPL  ILGK ++QR++E +  + +LD +VVATDD++I +   +FG   +MTS SC NGTER  E + +   + +IVVNIQGDEP + P +IDG+V  L+  P A   T VT +  PE     ++VKCV D +G A+YFSR  IP+N         P  LH+G+ ++   FL  Y  + P+ L L EDLEQL+VLE G  + V
Sbjct:    7 SKKVGILPSRWGSSRFPGKPLAKILGKTLVQRSYENALSSQSLDCVVVATDDQRIFDHVVEFGGLCVMTSTSCANGTERVEEVVSRHFPQAEIVVNIQGDEPCLSPTVIDGLVSTLENNPAADMVTPVTETTDPEAILTDHKVKCVFDKNGKALYFSRSAIPHN----FKHPTPIYLHIGVYAFRKAFLSEYVKIPPSSLSLAEDLEQLRVLETGRSIYV 222          
BLAST of DY262919 vs. ExPASy Swiss-Prot
Match: KDSB_CHLT2 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=kdsB PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 1.846e-46
Identity = 101/220 (45.91%), Postives = 140/220 (63.64%), Query Frame = 1
Query:  256 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV 912
            S+ VGI+P+R+ SSRF GKPL  ILGK ++QR++E +  + +LD +VVATDD++I +   +FG   +MTS SC NGTER  E + +   + +IVVNIQGDEP + P +IDG+V  L+  P A   T VT +  PE     ++VKCV D +G A+YFSR  IP+N         P  LH+G+ ++   FL  Y  + P+ L L EDLEQL+VLE G  + V
Sbjct:    7 SKKVGILPSRWGSSRFPGKPLAKILGKTLVQRSYENALSSQSLDCVVVATDDQRIFDHVVEFGGLCVMTSTSCANGTERVEEVVSRHFPQAEIVVNIQGDEPCLSPTVIDGLVSTLENNPAADMVTPVTETTDPEAILTDHKVKCVFDKNGKALYFSRSAIPHN----FKHPTPIYLHIGVYAFRKAFLSEYVKIPPSSLSLAEDLEQLRVLETGRSIYV 222          
BLAST of DY262919 vs. ExPASy Swiss-Prot
Match: KDSB_CHLTR (3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia trachomatis GN=kdsB PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 2.411e-46
Identity = 101/220 (45.91%), Postives = 141/220 (64.09%), Query Frame = 1
Query:  256 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV 912
            S+ VGI+P+R+ SSRF GKPL  ILGK ++QR++E +  + +LD +VVATDD++I +   +FG   +MTS SC NGTER  E + +   + +IVVNIQGDEP + P +IDG+V  L+  P A   T+VT +  PE     ++VKCV D +G A+YFSR  IP+N         P  LH+G+ ++   FL  Y  + P+ L L EDLEQL+VLE G  + V
Sbjct:    7 SKKVGILPSRWGSSRFPGKPLAKILGKTLVQRSYENALSSQSLDCVVVATDDQRIFDHVVEFGGLCVMTSTSCANGTERVEEVVSRHFPQAEIVVNIQGDEPCLSPTVIDGLVSTLENNPAADMVTSVTETTDPEAILTDHKVKCVFDKNGKALYFSRSAIPHN----FKHPTPIYLHIGVYAFRKAFLSEYVKIPPSSLSLAEDLEQLRVLEIGRSIYV 222          
BLAST of DY262919 vs. ExPASy Swiss-Prot
Match: KDSB_CHLTA (3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=kdsB PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 2.411e-46
Identity = 101/220 (45.91%), Postives = 141/220 (64.09%), Query Frame = 1
Query:  256 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV 912
            S+ VGI+P+R+ SSRF GKPL  ILGK ++QR++E +  + +LD +VVATDD++I +   +FG   +MTS SC NGTER  E + +   + +IVVNIQGDEP + P +IDG+V  L+  P A   T+VT +  PE     ++VKCV D +G A+YFSR  IP+N         P  LH+G+ ++   FL  Y  + P+ L L EDLEQL+VLE G  + V
Sbjct:    7 SKKVGILPSRWGSSRFPGKPLAKILGKTLVQRSYENALSSQSLDCVVVATDDQRIFDHVVEFGGLCVMTSTSCANGTERVEEVVSRHFPQAEIVVNIQGDEPCLSPTVIDGLVSTLENNPAADMVTSVTETTDPEAILTDHKVKCVFDKNGKALYFSRSAIPHN----FKHPTPIYLHIGVYAFRKAFLSEYVKIPPSSLSLAEDLEQLRVLEIGRSIYV 222          
BLAST of DY262919 vs. ExPASy Swiss-Prot
Match: KDSB_SOLUE (3-deoxy-manno-octulosonate cytidylyltransferase OS=Solibacter usitatus (strain Ellin6076) GN=kdsB PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 3.149e-46
Identity = 102/237 (43.04%), Postives = 144/237 (60.76%), Query Frame = 1
Query:  259 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDASETLRR 966
            +++G+IPARF+S+RF GK L  I  K M+Q  +ER+ LAT L   ++ATDDE++    + FGA V MT     +GT+R  E      +  +I+VNIQGDEPLI+P  ID  V  L   PD +  T    ++ P +  DPN VK V D+ G AIYFSR  IP+++    +   PY  H+G+  Y  +FL  Y  L   PL+  E LEQL+ LENGY+++V++ ++E+ GVD  E L R
Sbjct:    4 KILGVIPARFSSTRFPGKVLAQIANKTMLQHVYERAGLATYLTSTIIATDDERVYTAAKSFGARVRMTRADHLSGTDRVAEVAS--AENAEIIVNIQGDEPLIDPAAIDAAVLPLVHEPDVLMGTLKKRIEDPREIVDPNVVKVVTDHAGDAIYFSRCPIPFDRDRSADT--PYFKHVGLYVYQRDFLLSYSTLPVGPLERSERLEQLRALENGYRIRVVETEYESLGVDTPEDLER 236          
The following BLAST results are available for this feature:
BLAST of DY262919 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 397
Match NameE-valueIdentityDescription
KDSB_PARUW2.940e-5248.543-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_FUSNN5.738e-4844.903-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_PARD83.719e-4743.033-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_CHLMU4.858e-4747.733-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_CHLFF1.082e-4641.253-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_CHLTB1.846e-4645.913-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_CHLT21.846e-4645.913-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_CHLTR2.411e-4645.913-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_CHLTA2.411e-4645.913-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_SOLUE3.149e-4643.043-deoxy-manno-octulosonate cytidylyltransferase OS... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10BC10RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262919 ID=DY262919; Name=DY262919; organism=Citrus clementina; type=EST; length=1297bp
TCAAACTTCAAAGCAATTAGGAAGCTTCGTTGAATAAGATGTGGATTGTG
GATCAGTATGCCAGTTTCTCATAGTCGTGTAAAATCAGAATTAGAGAGTG
AGAGAGATTAAAAGATGAGCTCAAAATCAATATGTTCGCCGTCCGAATCT
TCTTCCTCAACAAAGTCGTGGATCGTGCACGGCATTGTAGCCGGAGCAGC
AATTGCTGTTGCCGTCGGTGCGCGCGCCTATCTGGGTCGATCGAAGAACT
TTCGGAGCCGGGTCGTGGGTATCATACCCGCCCGTTTCGCTTCTTCTCGC
TTCGAGGGCAAACCCCTTGTTAATATCCTCGGTAAACCTATGATCCAGAG
AACATGGGAAAGGTCCAAACTGGCAACCACATTGGATCACCTGGTTGTGG
CAACGGATGATGAGAAGATTGCAGAATGCTGCCAACAATTTGGTGCTGAT
GTGATAATGACTTCAGAATCTTGCCGAAATGGTACTGAAAGATGCAACGA
AGCATTACAAAAGCTGGAGAAGAAGTACGATATTGTTGTCAATATTCAGG
GAGATGAACCTCTTATTGAACCAGAGATTATAGATGGTGTTGTGAAAGCT
CTGCAGGCAGCCCCAGATGCAGTGTTCAGTACTGCTGTGACATCTTTAAA
ACCTGAAGATGCATTTGATCCAAATCGGGTGAAATGTGTTGTGGATAATC
ATGGTTATGCCATATATTTTTCAAGGGGATTAATTCCATATAACAAGTCA
GGAAAAGTCAATCCACAATTTCCATATTTGCTTCATCTTGGAATTCAGAG
CTATGACTCAAACTTCCTGAAGATATATCCAGGCCTTCATCCTACTCCCC
TACAACTAGAAGAGGATCTAGAACAGCTGAAAGTCCTTGAGAATGGCTAT
AAGATGAAGGTTATAAAGGTAGACCATGAAGCTCACGGTGTTGATGCTTC
AGAGACGTTGAGAAGATGAATCATTTATGCGTGAGAAAACTTGGTCTAGT
TTTAGTGACTAATCTGATTAAAAAGAAGGATGCAAATTTGCCTGTACAGC
AGTCAGCTGGCTCATGTTAATTAAGTTGGGATGGGGGGGGGGTTCTTTCC
CCCGTGGAGGTCCCTTCCCCGGGAAAAAAATTTTATTTAATTTTGCCTGG
CCGGGGTTTTTCCCATTTTTGGGGAATACCCGGAAGTTTTTTTGGGGGGG
TGCTTTTTGACACCAATTGCTTTTGGGAGAAAAAACAAAATTTTTTAGAA
TTTAAAAAAGGTGTTTTTTATTTTTGTTAAAAAAAATTATTATCTTT
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