DY262922

Overview
NameDY262922
Unique NameDY262922
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1149
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262922 vs. ExPASy Swiss-Prot
Match: YIPF6_DICDI (Protein YIPF6 homolog OS=Dictyostelium discoideum GN=yipf6 PE=3 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 7.547e-25
Identity = 68/177 (38.42%), Postives = 95/177 (53.67%), Query Frame = 3
Query:  423 PNTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEXXXXXXXXXXXXXXILTLNVLLLGGHIIFFQSLSLLGYCLFPLDIGALICMLKDNXXXXXXXXXXTLA--WSSWAAYPFMSSAVNPRKKSLALYPVFLMYVSGGFLII 947
            PNTL EPV  T+ RDL  I   L  V+ P   R +    LRDWDLWGP    + + + LS SA  +K+               I+T+N  LL G+I FFQS+ +LGYC+FPL I  +I  +  N            A  WSS+A+Y F+ S+V   ++ LA+YPV L Y+   +L++
Sbjct:    7 PNTLDEPVIQTILRDLKMIGFKLYHVILP---RGNAANVLRDWDLWGPLILCLVMAIFLSISAEEQKALEFTIVFVVVWCGAAIVTVNGQLLCGNISFFQSVCILGYCIFPLTIATIIIWIIQNFTMIVKLPIVGGAWFWSSFASYGFLGSSVPESRRLLAVYPVLLFYLVIAWLVV 180          
BLAST of DY262922 vs. ExPASy Swiss-Prot
Match: YIPF6_XENTR (Protein YIPF6 OS=Xenopus tropicalis GN=yipf6 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 3.506e-22
Identity = 64/197 (32.49%), Postives = 97/197 (49.24%), Query Frame = 3
Query:  396 IASTGFGSPPNTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEXXXXXXXXXXXXXX---ILTLNVLLLGGHIIFFQSLSLLGYCLFPLDIGALICML-------KDNXXXXXXXXXXTLAWSSWAAYPFMSSAVNPRKKSLALYPVFLMYVSGGFLIIAID 956
            +AST      +TL EPV DT+ RDL  + +    V++P    +     LRDWDLWGP    V L L L    +  K +                 ++TLN  LLGG I FFQSL +LGYC+ PL +  L+C L         +            AWS++A+  F++ +  P +++LA+YP+FL Y    ++++  +
Sbjct:   38 MASTSQEDDLSTLDEPVKDTIMRDLKAVGNKFLHVMYP----KKSTTLLRDWDLWGPLVLCVSLALMLQGGNADSKDDGGPQFAEVFVIIWFGAVVITLNSKLLGGTISFFQSLCVLGYCILPLTVAMLVCRLVLLLSHTTASFIVRLVVVTVMFAWSTFASTAFLADSQPPNRRALAVYPIFLFYFVISWMVLTFN 230          
BLAST of DY262922 vs. ExPASy Swiss-Prot
Match: YIPF6_MOUSE (Protein YIPF6 OS=Mus musculus GN=Yipf6 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.473e-20
Identity = 65/185 (35.14%), Postives = 89/185 (48.11%), Query Frame = 3
Query:  426 NTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEXXXXXXXXXXXXXXI----LTLNVLLLGGHIIFFQSLSLLGYCLFPLDIGALICML-------KDNXXXXXXXXXXTLAWSSWAAYPFMSSAVNPRKKSLALYPVFLMYVSGGFLII 947
            +TL E +  T+ RDL  +      V++P          LRDWDLWGP    V L L L  S+   K++                   +TLN  LLGG+I FFQSL +LGYC+ PL+I  LIC L         N            AWS  A+  F++ +  P +K+LA+YPVFL Y    ++I+
Sbjct:   52 STLNESIRRTIMRDLKAVGRKFMHVLYPRK----SNALLRDWDLWGPLILCVTLALMLQKSSIDGKNDGGGPEFAEVFVIIWFGAVTITLNSKLLGGNISFFQSLCVLGYCILPLNIAMLICRLLLLAGQGPINFMIRLFVVLLMFAWSVVASTAFLADSQPPNRKALAVYPVFLFYFVISWMIL 232          
BLAST of DY262922 vs. ExPASy Swiss-Prot
Match: YIPF6_DANRE (Protein YIPF6 OS=Danio rerio GN=yipf6 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.473e-20
Identity = 60/184 (32.61%), Postives = 92/184 (50.00%), Query Frame = 3
Query:  426 NTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEXXXXXXXXXXXXXX---ILTLNVLLLGGHIIFFQSLSLLGYCLFPLDIGALICML-------KDNXXXXXXXXXXTLAWSSWAAYPFMSSAVNPRKKSLALYPVFLMYVSGGFLII 947
            +TL EPV DT+ RDL  +      V++P    +     LRDWDLWGP    V L L L   ++  + +                 I+TLN  LLGG I FFQSL +LGYC+ PL +  ++C +         +          + +WS++A+  F++ +    +K+L +YPVFL Y   G++I+
Sbjct:   55 STLDEPVKDTILRDLRAVGQKFVHVMYP----KKSSALLRDWDLWGPLLLCVTLALMLQGGSADSEEDGRPQFAEVFVIIWFGSVIITLNSKLLGGTISFFQSLCVLGYCILPLTVAMIVCRIVLLGGSGVVSFAVRLIVVTASFSWSTFASTAFLADSQPTNRKALVVYPVFLFYFVIGWMIL 234          
BLAST of DY262922 vs. ExPASy Swiss-Prot
Match: YIPF6_RAT (Protein YIPF6 OS=Rattus norvegicus GN=Yipf6 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.924e-20
Identity = 66/185 (35.68%), Postives = 87/185 (47.03%), Query Frame = 3
Query:  426 NTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKK----SEXXXXXXXXXXXXXXILTLNVLLLGGHIIFFQSLSLLGYCLFPLDIGALICML-------KDNXXXXXXXXXXTLAWSSWAAYPFMSSAVNPRKKSLALYPVFLMYVSGGFLII 947
            +TL E +  T+ RDL  +      V++P          LRDWDLWGP    V L L L  S+   K    S                +TLN  LLGG+I FFQSL +LGYC+ PL+I  LIC L         N            AWS  A+  F++    P +K+LA+YPVFL Y    ++I+
Sbjct:   52 STLNESIRRTIMRDLKAVGRKFMHVLYPRK----SNTLLRDWDLWGPLILCVSLALMLQKSSVEGKRDGGSPEFAEVFVIIWFGAVTITLNSKLLGGNISFFQSLCVLGYCVLPLNIAMLICRLLLLAGQGPINFMIRLFVVLVMFAWSVIASTAFLADCQPPNRKALAVYPVFLFYFVVSWMIL 232          
BLAST of DY262922 vs. ExPASy Swiss-Prot
Match: YIPF6_HUMAN (Protein YIPF6 OS=Homo sapiens GN=YIPF6 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 4.285e-20
Identity = 63/184 (34.24%), Postives = 90/184 (48.91%), Query Frame = 3
Query:  426 NTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEXXXXXXXXXXXXXX---ILTLNVLLLGGHIIFFQSLSLLGYCLFPLDIGALIC---MLKD----NXXXXXXXXXXTLAWSSWAAYPFMSSAVNPRKKSLALYPVFLMYVSGGFLII 947
            +TL E V +T+ RDL  +      V++P          LRDWDLWGP    V L L L   ++  + +                  +TLN  LLGG+I FFQSL +LGYC+ PL +  LIC   +L D    N            AWS  A+  F++ +  P +++LA+YPVFL Y    ++I+
Sbjct:   52 STLNESVRNTIMRDLKAVGKKFMHVLYPRK----SNTLLRDWDLWGPLILCVTLALMLQRDSADSEKDGGPQFAEVFVIVWFGAVTITLNSKLLGGNISFFQSLCVLGYCILPLTVAMLICRLVLLADPGPVNFMVRLFVVIVMFAWSIVASTAFLADSQPPNRRALAVYPVFLFYFVISWMIL 231          
BLAST of DY262922 vs. ExPASy Swiss-Prot
Match: YIPF6_BOVIN (Protein YIPF6 OS=Bos taurus GN=YIPF6 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 9.547e-20
Identity = 62/184 (33.70%), Postives = 87/184 (47.28%), Query Frame = 3
Query:  426 NTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEXXXXXXXXXXXXXX---ILTLNVLLLGGHIIFFQSLSLLGYCLFPLDIGALICML-------KDNXXXXXXXXXXTLAWSSWAAYPFMSSAVNPRKKSLALYPVFLMYVSGGFLII 947
            +TL E V +T+ RDL  +      V++P          LRDWDLWGP    V L L L   +   + +                  +TLN  LLGG+I FFQSL +LGYC+ PL +  L+C L         N            AWS  A+  F++ +  P +K+LA+YPVFL Y    ++I+
Sbjct:   52 STLNESVQNTIMRDLKAVGKKFMHVLYPRK----SNTLLRDWDLWGPLILCVTLALMLQRGSVDSEKDGGPQFAEVFVIVWFGAVTITLNSKLLGGNISFFQSLCVLGYCILPLTMAMLVCRLVLLAEPGPVNFMVRLFVVIIMFAWSIVASTAFLADSQPPNRKALAVYPVFLFYFVISWMIL 231          
BLAST of DY262922 vs. ExPASy Swiss-Prot
Match: YIP4_SCHPO (Protein YIP4 OS=Schizosaccharomyces pombe GN=SPAC644.13c PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.600e-17
Identity = 53/174 (30.46%), Postives = 85/174 (48.85%), Query Frame = 3
Query:  426 NTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSAS-VKKSEXXXXXXXXXXXXXXILTLNVLLLGGHIIFFQSLSLLGYCLFPLDIGALICMLKDNXXXXXXXXXXTLAWSSWAAYPFMSSAVNPRKKSLALYPVFLMYVSGGFLI 944
            ++L EP+  T+  +   I   L  V++P        + LRDWDLWGP  F + + L L+ S   +++                + +LN+ LLG +I  FQS+ +LGY  FPL I +++C                 AW+ +AA   + ++    KK LA+YP+FL Y S  ++I
Sbjct:   55 DSLDEPIRVTLFNEFRAIGEKLVYVLYPKN-----AQVLRDWDLWGPLIFSLVIALALALSTDKIERESVFTVVVALIWFGEAVCSLNIKLLGANISIFQSMCILGYSSFPLMIASIVCAFVPLIFIRIPVIVAMYAWTLFAAMGVLQNSNLSNKKLLAVYPLFLFYFSLAWII 223          
The following BLAST results are available for this feature:
BLAST of DY262922 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
YIPF6_DICDI7.547e-2538.42Protein YIPF6 homolog OS=Dictyostelium discoideum ... [more]
YIPF6_XENTR3.506e-2232.49Protein YIPF6 OS=Xenopus tropicalis GN=yipf6 PE=2 ... [more]
YIPF6_MOUSE1.473e-2035.14Protein YIPF6 OS=Mus musculus GN=Yipf6 PE=2 SV=1[more]
YIPF6_DANRE1.473e-2032.61Protein YIPF6 OS=Danio rerio GN=yipf6 PE=2 SV=1[more]
YIPF6_RAT1.924e-2035.68Protein YIPF6 OS=Rattus norvegicus GN=Yipf6 PE=2 S... [more]
YIPF6_HUMAN4.285e-2034.24Protein YIPF6 OS=Homo sapiens GN=YIPF6 PE=2 SV=2[more]
YIPF6_BOVIN9.547e-2033.70Protein YIPF6 OS=Bos taurus GN=YIPF6 PE=2 SV=1[more]
YIP4_SCHPO2.600e-1730.46Protein YIP4 OS=Schizosaccharomyces pombe GN=SPAC6... [more]
back to top
Properties
Property NameValue
Genbank descriptionIC0AAA10BD02RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262922 ID=DY262922; Name=DY262922; organism=Citrus clementina; type=EST; length=1149bp
CTAAAATACCACTTCGTTTTTTTCCAGTCTCGCTTCCCTCTCTAGATCTG
CCAATTCCTTGTTAGATCTCGTCACTTTCCCGAGAAAATTTAAATAAGCG
TTAAACATTTTCTTAGAAAATGTCGAACCCGCACAGCGATACAATACCTC
TCCACGCGTCCTCCCAATCCGACATCGACGAGATCGAAAACCTAATCAAC
GCCAGCCCCGCCACCGTCCTCCCGGCTCGGCCCCCTAGCCCGCCGCGGCC
GGCGACCATCCCGGTCTCTTCTGCACCATTCATCCAGTCAAACATCCCTC
CTCCTCCCCCGACCTCTTCCAATCAGAAGGTGCCATCTGTCCCCGTCCCT
CCCCCTCTCCCATCCTCCACCATCTCTGGCGGTTCCCGCCCTAACATCGC
CTCGACTGGGTTCGGCTCGCCCCCGAACACGCTGACCGAGCCGGTTTGGG
ACACTGTCAAGAGAGATCTGTCGCGAATTGTGAGTAATTTGAAGCTCGTT
GTGTTTCCGAATCCATACAGGGAAGACCCCGGCAAGGCGCTTAGAGATTG
GGATCTGTGGGGTCCCTTTTTCTTTATAGTGTTTTTGGGACTCACTCTTT
CATGGTCAGCCTCTGTCAAGAAGTCTGAGGTATTCGCTGTTGCATTTGCA
CTACTTGCTGCTGGTGCTGTGATCTTGACCCTGAATGTACTACTTCTGGG
TGGACACATAATTTTCTTTCAGAGTCTGAGTCTGCTGGGTTATTGTCTAT
TTCCTCTTGATATTGGAGCCTTAATATGCATGTTGAAGGACAACGTGTTA
GTGAAAGTGATTGTAGTGTGTGTGACACTGGCTTGGAGCTCATGGGCTGC
CTATCCTTTCATGAGTTCTGCCGTGAACCCCAGAAAGAAAAGCCTCGCCC
TCTACCCTGTCTTTCTCATGTATGTCTCTGGTGGGTTTCTCATCATTGCC
ATTGATTAATGTGATGGGTGCCGGTTAAAGGGAATTCCATATGGCATTGG
AACTCATTTGGAGTCATATAGGGATTTTTGGGCTTGGGTTAATCCCGCTT
TTTTGGTAATTCAATTTTTTGACCCTTAATTGAAATGGTTGGAAAATAAA
ATTACTTTAAATTAAAAAAAAAATATTAAAACTAATTGGTATTGGAATT
back to top