DY262929

Overview
NameDY262929
Unique NameDY262929
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1349
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY262929_ssr941 microsatellite DY262929_ssr941:941..950. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY262929 vs. ExPASy Swiss-Prot
Match: SF01_HUMAN (Splicing factor 1 OS=Homo sapiens GN=SF1 PE=1 SV=4)

HSP 1 Score: 111.694 bits (278), Expect = 1.039e-23
Identity = 67/179 (37.43%), Postives = 105/179 (58.66%), Query Frame = 1
Query:  493 RKRRSRWADDEPKPVIQLPDFMKDFTGGIEFDPE-IQALNSRLLEISRMLQSG-LPLDDRPEGQRSPSPEPIYDNMGIRINTREYRARERLNKERQEIISQIIKRNPAFKPPADYRPP--KLQKKLYIPMKEYPGYNFIGFDYWAERGYTKENGERDGC*DCYPW*RVSERGKVGTKEG 1017
            +++RSRW  D  +    +P        G+  + E    +  ++ +++R L++G L +   PE  RSPSPEPIY++ G R+NTRE+R R++L +ER  +I++++  NP FKPPADY+PP  ++  K+ IP  EYP  NF+G      RG T +N E+    +C    ++  RGK   KEG
Sbjct:   16 KRKRSRWNQDTMEQKTVIPGMPTVIPPGLTREQERAYIVQLQIEDLTRKLRTGDLGIPPNPE-DRSPSPEPIYNSEGKRLNTREFRTRKKLEEERHNLITEMVALNPDFKPPADYKPPATRVSDKVMIPQDEYPEINFVGL-LIGPRGNTLKNIEK----ECNA--KIMIRGKGSVKEG 186          
BLAST of DY262929 vs. ExPASy Swiss-Prot
Match: SF01_MOUSE (Splicing factor 1 OS=Mus musculus GN=Sf1 PE=1 SV=5)

HSP 1 Score: 110.923 bits (276), Expect = 1.773e-23
Identity = 68/184 (36.96%), Postives = 106/184 (57.61%), Query Frame = 1
Query:  493 RKRRSRWADDEPKPVIQLPDFMKDFTGGIEFDPE-IQALNSRLLEISRMLQSG-LPLDDRPEGQRSPSPEPIYDNMGIRINTREYRARERLNKERQEIISQIIKRNPAFKPPADYRPP--KLQKKLYIPMKEYPGYNFIGFDYWAERGYTKENGERDGC*DCYPW*RVS-----ERGKVGTKEG 1017
            +++RSRW  D  +    +P        G+  + E    +  ++ +++R L++G L +   PE  RSPSPEPIY++ G R+NTRE+R R++L +ER  +I++++  NP FKPPADY+PP  ++  K+ IP  EYP  NF+G      RG T +N E+    +C     +      E GKVG K+G
Sbjct:   16 KRKRSRWNQDTMEQKTVIPGMPTVIPPGLTREQERAYIVQLQIEDLTRKLRTGDLGIPPNPE-DRSPSPEPIYNSEGKRLNTREFRTRKKLEEERHTLITEMVALNPDFKPPADYKPPATRVSDKVMIPQDEYPEINFVGL-LIGPRGNTLKNIEK----ECNAKIMIRGKGSVEEGKVGRKDG 193          
BLAST of DY262929 vs. ExPASy Swiss-Prot
Match: BBP_CRYNE (Branchpoint-bridging protein OS=Cryptococcus neoformans GN=BBP PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.773e-23
Identity = 72/179 (40.22%), Postives = 101/179 (56.42%), Query Frame = 1
Query:  493 RKRRSRWADDEPKPVIQLPDFMKDFTGGI-EFDPEIQALNSRLLEISRMLQSGLPLDDRPEGQRSPSPEPIYDNMGIRINTREYRARERLNKERQEIISQIIKRNPAFKPPADY---RPPKLQKKLYIPMKEYPGYNFIGFDYWAERGYTKENGERDGC*DCYPW*RVSERGKVGTKEG 1017
            RKRRSRW D   K  + +P       G + + + +  A++ RL EI+R L++G  +   PEGQRSPSP P YD  G R NTRE R R++L  ER  +I + +K +P F+PP D+   R  + Q K+YIP+KE+P  NF G      RG + +  ER+         ++S RGK   KEG
Sbjct:  129 RKRRSRWGDASAK--VNVPGMPVAVMGNVSQTELDNYAIHVRLEEINRKLRTGDVVP--PEGQRSPSPTPQYDAYGRRTNTRELRYRKKLEDERTRLIDRAVKSDPNFRPPVDFQHKRGSRPQDKVYIPVKEFPEINFFGL-LVGPRGNSLKKMERES------GAKISIRGKGSVKEG 296          
BLAST of DY262929 vs. ExPASy Swiss-Prot
Match: BBP_ASPFU (Branchpoint-bridging protein OS=Aspergillus fumigatus GN=bbp PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 8.799e-23
Identity = 72/182 (39.56%), Postives = 102/182 (56.04%), Query Frame = 1
Query:  493 RKRRSRWADDEPKP---VIQLPDF-MKDFTGGIEFDPEIQALNSRLLEISRMLQSG--LPLDDRPEGQRSPSPEPIYDNMGIRINTREYRARERLNKERQEIISQIIKRNPAFKPPADY-RPPKLQKKLYIPMKEYPGYNFIGFDYWAERGYTKENGERDGC*DCYPW*RVSERGKVGTKEG 1017
            RK+R+RW D +      ++ LP   M +FT       E   L+ R+ EIS+ L+    +P D    G RSPSP P YDN G R+NTREYR R+RL  ER +++ + +K  P + PP+DY RP K Q+K+Y+P+ +YP  NFIG      RG T +  E +         +++ RGK   KEG
Sbjct:   64 RKKRNRWGDAQENKAAGLMGLPTMIMANFTNE---QLEAYTLHLRIEEISQKLRINDVVPAD----GDRSPSPPPQYDNFGRRVNTREYRYRKRLEDERHKLVEKAMKTIPNYHPPSDYRRPTKTQEKVYVPVNDYPEINFIGL-LIGPRGNTLKKMEAES------GAKIAIRGKGSVKEG 231          
BLAST of DY262929 vs. ExPASy Swiss-Prot
Match: BBP_NEUCR (Branchpoint-bridging protein OS=Neurospora crassa GN=bpb-1 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 2.830e-21
Identity = 66/179 (36.87%), Postives = 97/179 (54.19%), Query Frame = 1
Query:  493 RKRRSRWADDEPKPVIQLPDFMKDFTGGIEFDP-EIQALNSRLLEISRMLQSGLPLDD--RPEGQRSPSPEPIYDNMGIRINTREYRARERLNKERQEIISQIIKRNPAFKPPADY-RPPKLQKKLYIPMKEYPGYNFIGFDYWAERGYTKENGERDGC*DCYPW*RVSERGKVGTKEG 1017
            RK+R+RW +        L          +  +  E   L+ R+ EI++ L+    +DD    +G RSPSP P YDN G R+NTREYR R++L  ER ++I + +K  P + PP+DY RP K Q+K+Y+P+ +YP  NFIG      RG T +  E +         +++ RGK   KEG
Sbjct:   79 RKKRNRWGEATENKAAGLMGLPTAIVANMTSEQLEAYTLHLRIEEITQKLK----IDDVVPADGDRSPSPAPQYDNHGRRVNTREYRYRKKLEDERHKLIEKAMKTIPNYHPPSDYRRPTKTQEKVYVPVNDYPEINFIGL-LIGPRGNTLKKMETES------GAKIAIRGKGSVKEG 246          
BLAST of DY262929 vs. ExPASy Swiss-Prot
Match: BBP_SCHPO (Branchpoint-bridging protein OS=Schizosaccharomyces pombe GN=bpb1 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 4.828e-21
Identity = 62/144 (43.06%), Postives = 88/144 (61.11%), Query Frame = 1
Query:  592 EIQALNSRLLEISRMLQSGLPLDDRPEGQRSPSPEPIYDNMGIRINTREYRARERLNKERQEIISQIIKRNPAFKPPADY-RPPKLQKKLYIPMKEYPGYNFIGFDYWAERGYT-KENGERDGC*DCYPW*RVSERGKVGTKEG 1017
            E+ +LN RL EI++ L++G  +    E  RSPSP P YDN G R+NTRE R +++L  ER  II + +K  P F+ P+DY RP K Q+K+Y+P+K+YP  NFIG      RG+T K+   + G        +++ RGK   KEG
Sbjct:  103 ELYSLNVRLEEITQKLRTGDVVPHHRE--RSPSPPPQYDNHGRRLNTREIRYKKKLEDERHRIIERAMKMVPGFRAPSDYRRPAKTQEKVYVPVKDYPEINFIGL-LIGPRGHTLKDMEAKSGA-------KIAIRGKGSVKEG 236          
BLAST of DY262929 vs. ExPASy Swiss-Prot
Match: BBP_USTMA (Branchpoint-bridging protein OS=Ustilago maydis GN=BBP PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 6.305e-21
Identity = 71/181 (39.23%), Postives = 97/181 (53.59%), Query Frame = 1
Query:  493 RKRRSRWADDEPKPVIQLPDFMKDFTGGIEFDPEIQALNSRLLEISRMLQSG--LPLDDRPEGQRSPSPEPIYDNMGIRINTREYRARERLNKERQEIISQIIKRNPAFKPPADY----RPPKLQKKLYIPMKEYPGYNFIGFDYWAERGYTKENGERDGC*DCYPW*RVSERGKVGTKEG 1017
            RKR+SRW D   K  I +P  +       E D    A+  RL EISR L+SG  +P    P+ +RSPSP P YDN G R NTRE R R++L  ER  ++ + +K +P F+PP+DY    R  +  +K+Y+P+KE+P   F G      RG T +  ER          ++S RGK   K G
Sbjct:  133 RKRKSRWGDANDK--ITIPTAIGANVSAQELDK--YAIQVRLDEISRKLRSGDFVP----PDRERSPSPPPTYDNQGRRTNTREVRYRKKLEDERVALVDRQLKLDPNFRPPSDYHAIKRNQRPTEKVYLPIKEFPEIKFFGL-LVGPRGNTLKTMERQS------GAKISIRGKGSVKTG 298          
BLAST of DY262929 vs. ExPASy Swiss-Prot
Match: BBP_DICDI (Branchpoint-bridging protein OS=Dictyostelium discoideum GN=sf1 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.405e-20
Identity = 69/182 (37.91%), Postives = 99/182 (54.40%), Query Frame = 1
Query:  493 RKRRSRWADDEPKP---VIQLPDFMKDFTGGIEFDPEIQALNSRLL--EISRMLQSGLPLDDRPEGQRSPSPEPIYDNMGIRINTREYRARERLNKERQEIISQIIKRNPAFKPPADYRPP--KLQKKLYIPMKEYPGYNFIGFDYWAERGYTKENGERDGC*DCYPW*RVSERGKVGTKEG 1017
            R R SRW  D P     V       K    G+  D +I AL  RL   EI++ +  G       + +RSPSP P YDN G R NTRE R +E+L KER +++    + NP +KPP+DY+PP  K  +K+YIP+K +P YNFIG      RG T++  E++         +++ RGK  +++G
Sbjct:   58 RTRLSRW--DTPLTNDGVSPFSSIFKTLPPGLT-DEQIAALILRLRVDEITKKITIGPIEFTERDRERSPSPPPTYDNNGKRSNTREQRIKEKLQKERHQLVVTAQQINPTYKPPSDYQPPNEKKTRKIYIPIKNHPEYNFIGL-IIGPRGNTQKRMEKES------GAKIAIRGKGSSRDG 229          
BLAST of DY262929 vs. ExPASy Swiss-Prot
Match: BBP_YARLI (Branchpoint-bridging protein OS=Yarrowia lipolytica GN=BBP PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.717e-18
Identity = 64/178 (35.96%), Postives = 99/178 (55.62%), Query Frame = 1
Query:  496 KRRSRWADDEPK--PVIQLPDFMKDFTGGIEFDP-EIQALNSRLLEISRMLQSGLPLDDRPEGQRSPSPEPIYDNMGIRINTREYRARERLNKERQEIISQIIKRNPAFKPPADY-RPPKLQKKLYIPMKEYPGYNFIGFDYWAERGYTKENGERDGC*DCYPW*RVSERGKVGTKEG 1017
            +R+ RW+  E K   ++Q+P  +   TG +  +  E  A+  R+ EIS+ L+ G  +   PE +RSPSP P YD+MG R NTR+ R   +L +ER  +I +  +  P ++PP DY +P K Q+ +YIP+ EYP  NFIG      RG T +  E++         ++  RG+   K+G
Sbjct:   64 RRKQRWSHGENKVADLLQMPTAL---TGHLTPEQAEAYAIYYRIEEISQQLRLGDIVP--PEDERSPSPPPQYDSMGKRTNTRDARYTRQLEEERHRLIERAQRLIPNYRPPVDYHKPAKTQEVVYIPVNEYPDINFIG-QLLGARGKTLKKMEQES------GAKICIRGRGSVKQG 229          
BLAST of DY262929 vs. ExPASy Swiss-Prot
Match: BBP_YEAST (Branchpoint-bridging protein OS=Saccharomyces cerevisiae GN=MSL5 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.107e-16
Identity = 50/117 (42.74%), Postives = 66/117 (56.41%), Query Frame = 1
Query:  679 RSPSPEPIYDNMGIRINTREYRARERLNKERQEIISQIIKRNPAFKPPADY-RPPKLQKKLYIPMKEYPGYNFIGFDYWAERGYTKENGERDGC*DCYPW*RVSERGKVGTKEGFEA 1026
            RSPSP P+YD  G R NTRE R R++L  ER +++   +K  P F PP DY RP K Q K YIP+ +YP  NF+G      RG T    + D   +C    +++ RG+   KEG  A
Sbjct:   92 RSPSPPPVYDAQGKRTNTREQRYRKKLEDERIKLVEIALKTIPYFVPPDDYKRPTKFQDKYYIPVDQYPDVNFVGL-LLGPRGRTLRKLQEDS--NC----KIAIRGRGSVKEGKNA 201          
The following BLAST results are available for this feature:
BLAST of DY262929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
SF01_HUMAN1.039e-2337.43Splicing factor 1 OS=Homo sapiens GN=SF1 PE=1 SV=4[more]
SF01_MOUSE1.773e-2336.96Splicing factor 1 OS=Mus musculus GN=Sf1 PE=1 SV=5[more]
BBP_CRYNE1.773e-2340.22Branchpoint-bridging protein OS=Cryptococcus neofo... [more]
BBP_ASPFU8.799e-2339.56Branchpoint-bridging protein OS=Aspergillus fumiga... [more]
BBP_NEUCR2.830e-2136.87Branchpoint-bridging protein OS=Neurospora crassa ... [more]
BBP_SCHPO4.828e-2143.06Branchpoint-bridging protein OS=Schizosaccharomyce... [more]
BBP_USTMA6.305e-2139.23Branchpoint-bridging protein OS=Ustilago maydis GN... [more]
BBP_DICDI1.405e-2037.91Branchpoint-bridging protein OS=Dictyostelium disc... [more]
BBP_YARLI1.717e-1835.96Branchpoint-bridging protein OS=Yarrowia lipolytic... [more]
BBP_YEAST6.107e-1642.74Branchpoint-bridging protein OS=Saccharomyces cere... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10BD10RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262929 ID=DY262929; Name=DY262929; organism=Citrus clementina; type=EST; length=1349bp
CAAAACATTCACATCTGAGACCTTCACCAACGAACGCACGCGCGCAACAC
CTCTCTCGACCCGTCGCTAGCCGTCACGAAAGACTCACAATCCATGGAGT
CAACAGTTGAATCAAACCCCCAATATCAAACCCTAGATTTCAATCAAAAC
CCGCCGTTACCGCAAGACACCCTAGATCACGATTCACAAAACCCGCCCAA
AACCCTAGCTCCTCCCGATGCTCAAAATCCCCAGCCGGCTTCCGAAAACG
GCCACGACAAAAACAATGAGAACAGCTGTAACAATAACAATGACGTCGCT
GCAGCCGATTACATTAAGCAGAAGCCGTTGCTTTCGGAAAATGGTCTGAC
CAACACTCATTCCGGCACCGATAAGGATCAGTCGGGTGGCGAGGAGGAGA
CCACAAGCAGACGACGACGTCGCAGCAGGTGGGACCCGCCGCCATCGGAA
TCAGGCGGCACGGAAGGTAATGGCGACTCTGGAAGCGGGACCAGGAAGCG
GAGATCGAGGTGGGCGGACGATGAGCCGAAGCCGGTGATTCAGTTGCCGG
ATTTTATGAAGGACTTTACTGGAGGTATTGAGTTTGACCCGGAAATTCAA
GCTTTGAATAGTCGTTTGTTAGAAATTTCTAGAATGCTTCAGTCTGGTTT
GCCTTTAGATGATAGACCTGAGGGACAAAGGAGTCCTTCGCCCGAACCAA
TTTATGATAATATGGGAATTAGGATTAATACTAGAGAGTATCGTGCAAGA
GAGAGATTGAATAAGGAGAGACAGGAGATTATATCTCAGATTATTAAAAG
AAATCCGGCATTTAAGCCACCGGCAGATTATAGGCCCCCAAAGCTTCAGA
AGAAGCTTTATATTCCGATGAAAGAGTACCCTGGTTATAATTTTATTGGG
TTTGATTATTGGGCCGAGAGGGGATACACAAAAGAGAATGGAGAGAGAGA
CGGGTGCTAAGATTGTTATCCGTGGTAAAGGGTCAGTGAAAGAGGGAAGG
TTGGCACAAAAGAGGGATTTGAAGCCCGACCCATCAGAAGATGAAGATTT
ACTTGTGGTGGGTGGAGGGCGAAACTCCGGAATTCTCTTGAAGGTGCAGC
TGGCCATGGGTGGAAAAAGTGGTTGCACCCAGTAAAATAAAGGTGTTAAA
AGGAACAAAAAAGGGCCCCAGATTTAAGGGGACCCTTGCCCCTTTAAAAG
GGGGAAAAAATAGGGGAAAGAAAGGGAACGGGGGTGGGTTATGTGGGGGG
GGGGGCCGGGGGAAAACGCGGCGGAAAGGAGGGGGGCGGCCCCCACCGCG
ACCACTTTCCCCCCTTTTTTTCAAAAAAAAGAGGGGGGGGGGGGGTTTT
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