DY262937

Overview
NameDY262937
Unique NameDY262937
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1311
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262937 vs. ExPASy Swiss-Prot
Match: VPS53_MOUSE (Vacuolar protein sorting-associated protein 53 homolog OS=Mus musculus GN=Vps53 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 2.216e-47
Identity = 110/314 (35.03%), Postives = 185/314 (58.92%), Query Frame = 1
Query:   25 VLHSSTELFFIIKRSLKRCTALTKSQTLLNLFKVFQRILKAYATKLFA-RLPR-----GGTGIVAAATGMDGQ--IRISERDERVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLETKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPI--YFQFFLDKLASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQT--SNAASYTKFVSREMSKAEALLKVILSPVDSV---ADTYRALLPEGTPMEFQRILELKGLKK 921
            VL S  +LF   K+ + +C+ L+  + ++ L  +FQ+ L+ YA K+ +  LP+     GG  I +     +G    R +  +  +IC I+++AEYC  T+  L E + + +D  L + ++++   D FS VI+ ++  LV  L+   D  +  M+++PW ++E VGDQS YV  + + +  ++P++   L+    YF  F  K A+S  P+F  ++FKCK IS  GA+Q+LLDT ++K +LLD+PS+G Q      ASYTK V + M++AE +LKV+++P + +    D Y  LL +     FQ+IL++KGLK+
Sbjct:  467 VLPSCADLFVYYKKCMVQCSQLSTGEPMIALTTIFQKYLREYAWKILSGNLPKTSSSSGGLTISSLLKEKEGSEVARFTLEELCLICSILSTAEYCLATTQQLEEKLKEKVDVSLTERINLTGEMDTFSTVISSSIQLLVQDLDAACDPALIAMSKMPWQNVEHVGDQSPYVTSVILHIKQNVPIIRDNLASTRKYFTQFCIKFANSFIPKFITHLFKCKPISMVGAEQLLLDTHSLKMVLLDLPSIGSQVVRKAPASYTKIVVKGMTRAEMILKVVMAPHEPLVVFVDNYIKLLTDCNSETFQKILDMKGLKR 780          
BLAST of DY262937 vs. ExPASy Swiss-Prot
Match: VPS53_CHICK (Vacuolar protein sorting-associated protein 53 homolog OS=Gallus gallus GN=VPS53 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 9.308e-46
Identity = 107/314 (34.08%), Postives = 185/314 (58.92%), Query Frame = 1
Query:   25 VLHSSTELFFIIKRSLKRCTALTKSQTLLNLFKVFQRILKAYATKLFA-RLPR-----GGTGIVAAATGMDGQ--IRISERDERVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLETKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPI--YFQFFLDKLASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQT--SNAASYTKFVSREMSKAEALLKVILSPVDS---VADTYRALLPEGTPMEFQRILELKGLKK 921
            VL S  +LF   K+ + +C+ L+  + ++ L  +FQ+ L+ YA K+ +  LP+     GG  I +     +G    + +  +  +IC I+++AEYC  T+  L E + + +D+ L + ++++   D FS VI+ ++  LV  L+   D  +  M+++ W ++E VGDQS YV  + + +  ++P++   L+    YF  F  K A+S  P+F  ++FKCK IS  GA+Q+LLDT ++K +LLD+PS+G Q      ASYT+ V + M++AE +LKV+++P +      D Y  LL + +   FQ+IL++KGLK+
Sbjct:  466 VLPSCADLFVYYKKCMVQCSQLSTGEPMIALTTIFQKYLREYAWKILSGNLPKTTSSSGGLTITSLLKEKEGSEVAKFTLEELCLICSILSTAEYCLATTQQLEEKLKEKVDASLVERINLTGETDTFSIVISNSIQLLVQDLDAACDPALTAMSKMQWQNVEHVGDQSPYVTSVILHIKQNVPIIRDNLASTRKYFTQFCIKFANSFIPKFINHLFKCKPISMVGAEQLLLDTHSLKMVLLDLPSIGSQVVRKAPASYTRIVVKGMTRAEMILKVVMAPHEPPVVFVDNYIKLLADCSTDTFQKILDMKGLKR 779          
BLAST of DY262937 vs. ExPASy Swiss-Prot
Match: YNP8_CAEEL (Uncharacterized protein T05G5.8 OS=Caenorhabditis elegans GN=T05G5.8 PE=2 SV=3)

HSP 1 Score: 146.747 bits (369), Expect = 2.809e-34
Identity = 95/312 (30.45%), Postives = 171/312 (54.81%), Query Frame = 1
Query:   34 SSTELFFIIKRSLKRCTALTKSQTLL--NLFKVFQRILKAYATK-LFARLPRGGTGIVAAATGMD------GQIRISERDERVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLETKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPI--YFQFFLDKLASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGR--QTSNAASYTKFVSREMSKAEALLKVI---LSPVDSVADTYRALLPEGTPMEFQRILELKGLKK 921
            SS ++F ++K+ +   + L+     L  ++  V +  L+ YAT  L A LP  G+    AA             R++   + ++C I+ +A++C +TS  L E +S+ I      GVD+S+  + F ++  ++L  LV  +E+  D  +  +++V W +++ VGD+S ++  +   L  ++P++  +LS    YF  F  KLA+ L  +F  ++F+C+ IS  GA+Q+LL+T ++KT LL +PS+     +    +Y   V+  ++KAE +LKV+   L  VD   + Y  LLP     E Q++LE+KG+K+
Sbjct:  409 SSADMFLLLKKVITESSKLSSEPDALIRDVIGVVRVCLRGYATSCLVAFLPSLGSQQSGAANLFSLIREEIAYPRLTPDQQFLVCCILATADWCAETSIQLQEKLSQRIP-----GVDISQETEAFYSITNQSLQVLVQDVESTCDAALQSISKVNWTAVDCVGDESPFIGSMRAHLRQAVPLIRDMLSDRRKYFAHFCLKLATQLAHKFVGSLFRCRTISTHGAEQLLLETHSLKTFLLSVPSIDSIINSKPPTAYVTSVNAALTKAEMILKVVMCSLETVDEFVEQYIKLLPASDAAEMQKVLEMKGVKR 715          
BLAST of DY262937 vs. ExPASy Swiss-Prot
Match: VPS53_PONAB (Vacuolar protein sorting-associated protein 53 homolog OS=Pongo abelii GN=VPS53 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 7.410e-27
Identity = 71/230 (30.87%), Postives = 128/230 (55.65%), Query Frame = 1
Query:   25 VLHSSTELFFIIKRSLKRCTALTKSQTLLNLFKVFQRILKAYATKLFA-RLPR-----GGTGIVAAATGMDGQ--IRISERDERVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLETKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPI--YFQFFLDKLASSLGPRFYANIFKCKHISETGAQQM 684
            VL S  +LF   K+ + +C+ L+  + ++ L  +FQ+ L+ YA K+ +  LP+     GG  I +     +G    + +  +  +IC I+++AEYC  T+  L E + + +D  L + ++++   D FS VI+ ++  LV  L+   D  +  M+++ W ++E VGDQS YV  + + +  ++P++   L+    YF  F  K A+S  P+F  ++FKCK IS  GA+Q+
Sbjct:  467 VLPSCADLFVYYKKCMVQCSQLSTGEPMIALTTIFQKYLREYAWKILSGNLPKTTTSSGGLTISSLLKEKEGSEVAKFTLEELCLICSILSTAEYCLATTQQLEEKLKEKVDVSLIERINLTGEMDTFSTVISSSIQLLVQDLDAACDPALTAMSKMQWQNVEHVGDQSPYVTSVILHIKQNVPIIRDNLASTRKYFTQFCIKFANSFIPKFITHLFKCKPISMVGAEQV 696          
BLAST of DY262937 vs. ExPASy Swiss-Prot
Match: VPS53_HUMAN (Vacuolar protein sorting-associated protein 53 homolog OS=Homo sapiens GN=VPS53 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 7.410e-27
Identity = 71/230 (30.87%), Postives = 128/230 (55.65%), Query Frame = 1
Query:   25 VLHSSTELFFIIKRSLKRCTALTKSQTLLNLFKVFQRILKAYATKLFA-RLPR-----GGTGIVAAATGMDGQ--IRISERDERVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLETKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPI--YFQFFLDKLASSLGPRFYANIFKCKHISETGAQQM 684
            VL S  +LF   K+ + +C+ L+  + ++ L  +FQ+ L+ YA K+ +  LP+     GG  I +     +G    + +  +  +IC I+++AEYC  T+  L E + + +D  L + ++++   D FS VI+ ++  LV  L+   D  +  M+++ W ++E VGDQS YV  + + +  ++P++   L+    YF  F  K A+S  P+F  ++FKCK IS  GA+Q+
Sbjct:  467 VLPSCADLFVYYKKCMVQCSQLSTGEPMIALTTIFQKYLREYAWKILSGNLPKTTTSSGGLTISSLLKEKEGSEVAKFTLEELCLICNILSTAEYCLATTQQLEEKLKEKVDVSLIERINLTGEMDTFSTVISSSIQLLVQDLDAACDPALTAMSKMQWQNVEHVGDQSPYVTSVILHIKQNVPIIRDNLASTRKYFTQFCVKFANSFIPKFITHLFKCKPISMVGAEQV 696          
BLAST of DY262937 vs. ExPASy Swiss-Prot
Match: YDLF_SCHPO (Uncharacterized protein C3A12.15 OS=Schizosaccharomyces pombe GN=SPAC3A12.15 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.599e-21
Identity = 87/309 (28.16%), Postives = 152/309 (49.19%), Query Frame = 1
Query:   19 NNVLHSSTELFFIIKRSLKRCTALTKSQTLLNLFKVFQRILKAYATKLFARLPRGGTGIVAAATGMDGQIRISERDERVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLETKFDN----EMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLS-PIYFQFFLDKLASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVILSPVDSVA---DTYRALLPEGTPMEFQRILELKGLKK 921
            + VL SS +LF   +++L +   LT+S  L+ L  +F + L+ Y                     +D Q   + +D   I   +N+AEY ++T+ +L +   +I + +  D +  SEV +    VI+ +  TL+     KF+N    ++  ++++   ++E+VGDQS YV G    +T+      S++   ++ + F D+   S   +F   I+  K ISE GA+Q+LLD  + K  LL +P L +  S   SY   ++  M   E +LK +L+P    A    +Y  L+ + +   F  +LELKG+ K
Sbjct:  400 SQVLSSSIKLFQAYRKTLTQFVRLTRSSPLVGLKNLFIKWLRRYTQVEL----------------LDYQESSTFKD---IAIRLNTAEYIYRTTIELEKRFQEISNKEFKDKMSFSEVLE----VISSSRGTLLKFATGKFENVLNSDLEPLSKMDLKNIETVGDQSSYVGGAVQNMTAKASEFLSVVDLNMFARNFCDRSCESFTRQFLNAIYLAKPISEVGAEQLLLDLYSFKNALLKLPDLKQDYSITDSYINHLTIFMGYIETVLKTLLTPASPKAGFIQSYIFLVKDRSVTNFTVLLELKGVGK 685          
The following BLAST results are available for this feature:
BLAST of DY262937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
VPS53_MOUSE2.216e-4735.03Vacuolar protein sorting-associated protein 53 hom... [more]
VPS53_CHICK9.308e-4634.08Vacuolar protein sorting-associated protein 53 hom... [more]
YNP8_CAEEL2.809e-3430.45Uncharacterized protein T05G5.8 OS=Caenorhabditis ... [more]
VPS53_PONAB7.410e-2730.87Vacuolar protein sorting-associated protein 53 hom... [more]
VPS53_HUMAN7.410e-2730.87Vacuolar protein sorting-associated protein 53 hom... [more]
YDLF_SCHPO1.599e-2128.16Uncharacterized protein C3A12.15 OS=Schizosaccharo... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA10BE06RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262937 ID=DY262937; Name=DY262937; organism=Citrus clementina; type=EST; length=1311bp
ATCGAATAGGGAAGTCAGAATAATGTTCTACATAGCAGCACAGAATTGTT
TTTTATAATCAAAAGGAGCTTAAAGCGATGCACTGCTTTAACGAAGAGCC
AGACATTATTAAATTTGTTCAAGGTATTTCAAAGAATTCTAAAAGCATAT
GCAACAAAGCTTTTTGCAAGACTACCAAGAGGTGGTACAGGGATTGTTGC
AGCAGCTACTGGTATGGATGGACAGATAAGGATATCTGAGAGGGACGAAA
GGGTTATCTGTTATATTGTGAATTCAGCTGAATACTGCCACAAAACGTCT
GGAGATCTGGCTGAAAGTGTGTCCAAAATAATTGATTCTCAGTTAGCAGA
TGGAGTGGATATGTCTGAAGTGCAGGACGAATTTTCAGCAGTGATAACGA
AAGCATTGGTAACCTTGGTTCTTGGCCTGGAAACTAAGTTCGATAATGAA
ATGGCTGGAATGACCCGTGTTCCATGGGGTAGTCTAGAAAGTGTGGGTGA
CCAATCAGAGTATGTCAATGGAATAAATATGATCCTTACTAGTAGCATTC
CTGTACTTGGAAGCCTTCTTTCACCCATCTACTTTCAGTTCTTCTTGGAT
AAGCTCGCATCATCCCTTGGCCCACGATTTTATGCCAATATTTTCAAGTG
CAAGCACATATCAGAAACTGGAGCCCAACAGATGTTGTTAGACACGCAAG
CCGTAAAAACTATTCTTCTAGACATACCGTCCCTCGGTCGACAGACGTCA
AATGCTGCTAGCTATACAAAATTTGTAAGCCGCGAGATGAGCAAAGCTGA
AGCACTTCTGAAGGTCATACTATCCCCGGTTGATTCTGTGGCAGACACAT
ATCGTGCATTGCTACCCGAGGGAACCCCTATGGAATTCCAGCGTATCCTA
GAGCTTAAGGGCTTAAAAAAGCTGATCAGCAGACTATTCTTGATGACTTC
ACAAACATGGTCCGGGGACTACCCAACCTACTATTGCCACCTCGGGTGGT
GCCTGCGCCCTTCCTGCTCCCCATCTTCAGTGGATCCAAATCTGCTTCCG
GCTGGGTTAACACTTCCCGGAAAAATGATTAACAAAACAACTGCCCTGGG
ACAAGGGGCTGCCAAACGGGGATTCAAAAAGGTCCGGGGCTTTACCGAGG
GTGGAAAAAAACCGGAAAAAGGGACCTTTCTAAAAACTTTTCCACCATAA
ACATTTCCTAAATATTTTTTTTATAATTTATTTTTTATTATCTTTCTTTC
TCTGTCTCCCCCCCCGCCCCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCACCCCC
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