DY262939

Overview
NameDY262939
Unique NameDY262939
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1331
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY262939 vs. ExPASy Swiss-Prot
Match: HAKAI_CHICK (E3 ubiquitin-protein ligase Hakai OS=Gallus gallus GN=CBLL1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 8.104e-13
Identity = 37/94 (39.36%), Postives = 58/94 (61.70%), Query Frame = 1 
Query:  391 LGER----VHFCVRCDYPIAIYGRLNPCEHVFCLDCA-----RSDSMCYLCDERIQKIQTIKLMEGIFICA-APHCLKSFLKKTEFEAHIHVNH 642
            LGE+    VHFC +C  PI +YGR+ PC+HVFC DCA     + D MC  C+E +Q+I+   +   +F+C+    C +++L + + +AHI+  H
Sbjct:   98 LGEKDDTPVHFCDKCGLPIKMYGRMIPCKHVFCYDCAILHEKKGDKMCPGCNEPVQRIEQC-VRGSLFMCSIVQGCKRTYLSQRDLQAHINHRH 190
[Close]
BLAST of DY262939 vs. ExPASy Swiss-Prot
Match: HAKAI_MACFA (E3 ubiquitin-protein ligase Hakai OS=Macaca fascicularis GN=CBLL1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.805e-12
Identity = 37/94 (39.36%), Postives = 56/94 (59.57%), Query Frame = 1 
Query:  391 LGER----VHFCVRCDYPIAIYGRLNPCEHVFCLDCA-----RSDSMCYLCDERIQKIQTIKLMEGIFICA-APHCLKSFLKKTEFEAHIHVNH 642
            LGE+    VHFC +C  PI IYGR+ PC+HVFC DCA     + D MC  C + +Q+I+       +F+C+    C +++L + + +AHI+  H
Sbjct:   97 LGEKDDTPVHFCDKCGLPIKIYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQC-TRGSLFMCSIVQGCKRTYLSQRDLQAHINHRH 189
[Close]
BLAST of DY262939 vs. ExPASy Swiss-Prot
Match: HAKAI_HUMAN (E3 ubiquitin-protein ligase Hakai OS=Homo sapiens GN=CBLL1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.805e-12
Identity = 37/94 (39.36%), Postives = 56/94 (59.57%), Query Frame = 1 
Query:  391 LGER----VHFCVRCDYPIAIYGRLNPCEHVFCLDCA-----RSDSMCYLCDERIQKIQTIKLMEGIFICA-APHCLKSFLKKTEFEAHIHVNH 642
            LGE+    VHFC +C  PI IYGR+ PC+HVFC DCA     + D MC  C + +Q+I+       +F+C+    C +++L + + +AHI+  H
Sbjct:   98 LGEKDDTPVHFCDKCGLPIKIYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQC-TRGSLFMCSIVQGCKRTYLSQRDLQAHINHRH 190
[Close]
BLAST of DY262939 vs. ExPASy Swiss-Prot
Match: HAKAI_MOUSE (E3 ubiquitin-protein ligase Hakai OS=Mus musculus GN=Cbll1 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.358e-12
Identity = 36/94 (38.30%), Postives = 56/94 (59.57%), Query Frame = 1 
Query:  391 LGER----VHFCVRCDYPIAIYGRLNPCEHVFCLDCA-----RSDSMCYLCDERIQKIQTIKLMEGIFICA-APHCLKSFLKKTEFEAHIHVNH 642
            LGE+    VHFC +C  PI +YGR+ PC+HVFC DCA     + D MC  C + +Q+I+       +F+C+    C +++L + + +AHI+  H
Sbjct:   98 LGEKDDTPVHFCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQC-TRGSLFMCSIVQGCKRTYLSQRDLQAHINHRH 190
The following BLAST results are available for this feature:
BLAST of DY262939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
HAKAI_CHICK8.104e-1339.36E3 ubiquitin-protein ligase Hakai OS=Gallus gallus... [more]
HAKAI_MACFA1.805e-1239.36E3 ubiquitin-protein ligase Hakai OS=Macaca fascic... [more]
HAKAI_HUMAN1.805e-1239.36E3 ubiquitin-protein ligase Hakai OS=Homo sapiens ... [more]
HAKAI_MOUSE2.358e-1238.30E3 ubiquitin-protein ligase Hakai OS=Mus musculus ... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA10BE08RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262939 ID=DY262939; Name=DY262939; organism=Citrus clementina; type=EST; length=1331bp
ACGTCGTCGTTTGACGCATCCATCGCCACCGCAAGCAACAAGGCGCTGTC
TCTGGCAAAAGAGCGCAGCCCGATTCTGGCCGATATCTCTCGAATGACAA
AAATAATCCGCCAACCCGATACTTGCTGTCACTAGCTTGAGTTTTTTTGG
AGGTCAGAGCTTGTTTTACTTAGTGGGATAAAGACGGTTAGGTTGAAAAT
GCTTCAAATTCGGCTTAAAAAGGTTCCATCATCAGAAAGTGGTGGAGCGG
TGAAGTCCTTGCCAGTGGAGACTGTGACAGTTGCGTGTCCTGATCATCTT
GTTCTGGCTGATCTTCCTGTGGCGAAGGGTATTGGTGCTGCAACTGCTGC
TTCTCTTGTCAAGACTGTTGGTCGCAGGTCCCGTCGCCAACTTGGTGAGC
GAGTCCATTTTTGTGTTCGATGTGATTACCCAATTGCTATCTACGGGCGC
TTGAATCCCTGTGAACATGTGTTCTGTCTTGACTGTGCCAGGAGTGACTC
AATGTGCTATCTTTGTGATGAACGTATTCAGAAGATTCAGACAATCAAAT
TGATGGAGGGCATCTTCATCTGTGCAGCCCCTCACTGTCTTAAGTCTTTC
CTGAAGAAAACTGAATTTGAGGCTCATATTCACGTGAACCATGCTGACCT
TCTACTACAGCCCAATGCAGAGAAAGAAGATAATGAATCAGAAAGTGCCA
AACAACCTACGGTTTCAGAATCCTCTGTTCGAGCCCCCCCGAGGCCTGTC
TTTTCTCCTGGTCAAAATTCCCAGCTTAATGATCGTGATGACAAAGCTCG
TTGGCAGCAACCTAGAGAACAACCTCCACCAAGGGCAGGCCTGCTACCAA
AGCAGCCTCCTGTTTTCGGACAACTCCAAACTACCAATCAGATGCCCAGC
CTGACGGCAGCCTTCCTCCAGGCTTTGAGAGGCCTGGTCCTCACAACCGC
TTTCAACAGAGCTTTGACCTGCAAGGGACCCCTCAACAGGATCTTAGCCA
AAGCAAGGGAATTTACAGAAACCCAATTTCCCTGAAAACCCTCTATGGCT
CCAATGCAACCCCCAAATTTTGTGGGGCCCTGAATTCAAACCCCTTGTTG
AAACCCCCTTTCCTCCCTTTTCAAATGGAGGATCCAAAAATTTTTCGGGG
CTCCCCTTTGAAAGGCCAAGGCCAAATTTAGGGAAAAAAATTGGAATTAA
AAAAAAACCTAATTTTGGGGGTTTCCCCCCCGGGGCCCCCCCGGGGGGGG
GAAAATTTTCTCCCCCCCATTTCTCCCCCTCCCCCCTCGGGGAAACCCCC
GGGGGCGGGGGGTGGGGCCCCCCCCCCCCTT
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