DY262949

Overview
NameDY262949
Unique NameDY262949
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1361
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY262949_ssr99 microsatellite DY262949_ssr99:99..113. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12553 contig Ccv1_Contig12553:83..1444. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY262949 vs. ExPASy Swiss-Prot
Match: Y1491_ARATH (DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 4.261e-33
Identity = 80/181 (44.20%), Postives = 105/181 (58.01%), Query Frame = 3 
Query:  354 LWENPYSATTSWKPCAERRLGGISELPPENETNGYIFIHAEGGLNQQRIAICNAVAVAKIMNATLILPVLKQDQIWKDQTKFEDIFDVDHFIDYLKDDVRIVRDIPDWFTDKSELFSSIRRTVKNIPKYAPAQFYIDNVLPRIKEKKIMALXPFVDRLXYDNVPPEINRLRCRGYYHALKF 896
            LWE+  S    W+P +  R       PP  ETNGY+ +   GGLNQQR AICNAV  A+IMNATL+LP L  +  W D + F+ I+DV+HFI+ LK DV+IV  IPD    K+     I+      P+ AP ++Y+   L  ++E   + L PF  RL  +   PE  RLRCR  YHAL+F
Sbjct:   62 LWESAKSG--GWRPSSAPRSDWP---PPTKETNGYLRVRCNGGLNQQRSAICNAVLAARIMNATLVLPELDANSFWHDDSGFQGIYDVEHFIETLKYDVKIVGKIPD--VHKNGKTKKIKAFQIRPPRDAPIEWYLTTALKAMREHSAIYLTPFSHRLAEEIDNPEYQRLRCRVNYHALRF 235
The following BLAST results are available for this feature:
BLAST of DY262949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1491_ARATH4.261e-3344.20DUF246 domain-containing protein At1g04910 OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA10BF06RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262949 ID=DY262949; Name=DY262949; organism=Citrus clementina; type=EST; length=1361bp
CTGAGCTGAGACATTCCAGCTCGTTGGGAAGCCGAGCCGGCTCCTCTCCA
ATGAAGCGCGACGACACCGCATCACCTCTAATTCACGAACAGCACGCGGA
CGACGACGACGACGGTCGCTCGAGGCATCTATTCAGAGATCGTGTCCGCT
CGATTTGGTCGTACTTCCCTTTCTTGAGTGATGATCCCAGGGTTTCTCAA
CAAAACTCCAGGATCTCTTTGTGTTTGGCGCTGTTCGTTGTTGTAGCTGG
ATTGATCTCGATCTTATCGATCGTCAATCATTTGAATGCTCCATACTTGT
GTAAAAAAGATGGCATTGTTCTTCACTGCCCGCGTGTCAAAGAGGCTCCT
TCTCTATGGGAAAATCCTTACTCTGCAACTACTTCTTGGAAGCCTTGTGC
TGAGCGTCGTCTTGGTGGTATATCAGAACTTCCTCCTGAGAATGAAACAA
ATGGTTATATATTCATCCATGCTGAGGGTGGTCTTAATCAGCAACGAATT
GCTATATGTAATGCAGTTGCTGTAGCCAAAATAATGAATGCAACCCTCAT
CTTGCCAGTATTGAAGCAGGACCAGATTTGGAAAGATCAAACGAAATTTG
AAGACATCTTTGATGTTGATCATTTTATCGACTACTTGAAGGATGATGTC
CGAATTGTCCGTGATATCCCAGACTGGTTTACTGACAAATCAGAATTATT
CTCTAGCATAAGACGAACAGTAAAAAACATTCCAAAGTATGCTCCTGCCC
AATTTTACATTGACAATGTACTGCCTCGAATCAAGGAGAAGAAGATAATG
GCCCTAANACCTTTTGTTGATCGACTTGNGTATGATAATGTTCCTCCAGA
AATCAACAGGCTAAGGTGCAGGGGTTATTATCATGCTCTGAAATTCTTCC
TGAGATTGAGCAGATGTCAGATTTACTAGCATCAAGGATGAAAAATCGCA
CTGGCAGTTCAATCCTTATATGGCTCTGCCCCTTTAGGTTTGAAAAAGGT
ATGGTCGGCTTGTCATTTTGGTGATTTTGTGGGGACACGGGAGGAAAAAG
CTAAAATGCTGAATAATAGAAAAAAGAATGGCCTTCACGCTCCAAAAAGG
GTTCCATCCTAGGGAATTGGCCCGGCCAAAACCGGAAGAAGGGGGAATGC
CCCCTGACCGGGGAAAAAGGGCGGGGATTCTTTGGGGCAGGGGGTTTCCC
CAAAAAAAACCAATTTTTTTTTTTTTCTGGGTCGGGGTTGGGGGGGGGGG
AAACCCGGGGGGGGCCCCCCCCAGGAAAAATGTTTCCCCCACCCTTTGGT
TCTTAAAAAGAGGAGAGGAGGTGTACGCCCCCGGAAAGAAGAGATGTTTG
GGTGGTTGTTT
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