DY263025

Overview
NameDY263025
Unique NameDY263025
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1169
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY263025_ssr14 microsatellite DY263025_ssr14:14..47. BLAST: Citrus ESTs to Populus V2 proteins
Ccv1_Contig2385 contig Ccv1_Contig2385:1..1169. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
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BLAST of DY263025 vs. ExPASy Swiss-Prot
Match: SYH_ORYSJ (Histidyl-tRNA synthetase OS=Oryza sativa subsp. japonica GN=Os05g0150900 PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 2.183e-19
Identity = 52/104 (50.00%), Postives = 71/104 (68.27%), Query Frame = 3 
Query:  498 LDHKSSALSAIIDAVAALSCEASGADVAAFNSIDSGDGFTAKEEIGVAGDLKVLLNGSKLVGKMKSED---ILEIPKINGKLREVVKSVHSSTRVELNSSVKVG 800
            +D  +S L  + DAVAALSCEA+  DVAAF+   SGDG +AK+E  VA D+K+LL GSKLVG     D     ++P +NG  RE V+++H+  R+ELN+ VK+G
Sbjct:   36 IDCCASPLVRVADAVAALSCEAARGDVAAFDVPTSGDGLSAKDEADVAADVKMLLFGSKLVGAAGGADAASFTKVPTVNGIFREAVRALHARVRIELNAPVKLG 139
The following BLAST results are available for this feature:
BLAST of DY263025 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SYH_ORYSJ2.183e-1950.00Histidyl-tRNA synthetase OS=Oryza sativa subsp. ja... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA10CE01RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263025 ID=DY263025; Name=DY263025; organism=Citrus clementina; type=EST; length=1169bp
CTCTCACTCCGTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTT
CTTTTTCTCTTTCTCTCTCCAAAAGCTTCAACAATGGCGGAGAGGGGTTC
AGCCGCCGTCATAACGGTCGGCGGCAAAGGCTCATCCCTCAATTCCTCCT
CTGTCTACGCCATTTCCAATGGCCTCGCTCAGGTACGCGTCGACTCATCG
GCTCTTGATAGACTCTCTTCCACATTACCCAATCAGAACCCTCCACCTGT
CACAAAATTCCAAATCCCCATTCCCAAAACCCTAACTCTTGAAGAATCCC
GCGCTTTTCTAACCGTCCTCCTGAACAAGCTCCTCCTTGGTTCCTCCATC
CGTACGGCGTTTGCCGTTCTCATTTCAGAAACTCTTAATTCCCAAACCGA
AACCCTACAATTTGAATCAGTAGATGTGACTGAAGATGAACGCATCGTTT
TAGAGAAATTGAGTTTACCATCTGTTTTGTCTGGAATTTGTGCCGTTTTG
GATCACAAGTCATCGGCTTTGTCGGCTATTATTGATGCTGTGGCTGCGTT
GTCGTGTGAAGCGTCTGGAGCTGACGTGGCGGCCTTCAATTCGATAGATT
CGGGTGACGGGTTTACTGCTAAGGAGGAGATTGGGGTTGCTGGTGATTTG
AAGGTGTTGCTTAATGGGTCTAAGTTAGTGGGGAAAATGAAGAGTGAAGA
TATTTTGGAAATTCCAAAAATAAATGGGAAATTAAGAGAGGTTGTGAAAT
CAGTGCATTCGAGTACAAGAGTTGAGTTGAATTCGAGTGTGAAGGTTGGG
ATAAGTGGGACTGCCAAGGCTGTGGGGGCAAATGCGCTAGCATTGGCCGC
GGCAATTCATAACTTGGGTGAGAGTAATTTGTATCGCGCAAAAATGAACT
TGAATTCATTTAATAGCGATGGTTTAAGGAGCTTGTTTGAAAAGGATTGC
TCCAATGGTGATAATTTGAAAAAAAACTTACAATTGGGTTTTGGATGCAA
TTTTTAAAAAGGATTAGGTGAAATTTTTTGCCCAAACCAAATGTTTTGTT
TGGGGATGGGGGGGGAAACTTTTCATTTTGGAAGGCAGTGCTTTGGTTTT
GTTTTCCCTTGAAAGGGGGGGAAATTTTGGGGGGAAAAAGGAAAAGGGGA
GGGGGGAATTGGGGGGGTG
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