DY263041

Overview
NameDY263041
Unique NameDY263041
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1344
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY263041_ssr9 microsatellite DY263041_ssr9:9..32. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY263041 vs. ExPASy Swiss-Prot
Match: C3H34_ARATH (Zinc finger CCCH domain-containing protein 34 OS=Arabidopsis thaliana GN=At3g06410 PE=2 SV=2)

HSP 1 Score: 294.664 bits (753), Expect = 8.604e-79
Identity = 154/287 (53.66%), Postives = 183/287 (63.76%), Query Frame = 2
Query:  296 MERHGRVSE-GSQSDPSPEWTAPGTETGPEEPLWQLGL------GVGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQ--GAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPAGVPAPTPSXXXXXXXXXXXXXXXXXXXXXQSPSVPSAQQYGGNNCKASFFAWFICEGPYGPGAVF-SSMVFFGGLDSKCNFLNPNSSSGTGFHPSFESASFLGIYPISAS 1126
            MER+GR  E GS+SDPS EWT+ G ET  E P+W+LGL      G G ESYPERPDE DCI+Y+RTG C YGSRCRFNHPRDRG+V+G  R   G  PER+G PVCQ++MRTGTCK+GASCKYHHPRQ  G GSV+ VSL+Y GYPLRPGEKECSYY++T QCKFG TC+F+HP P  V  P                        QS S+PS+QQYG    + SF      + PYGP  V    MV + G +     L+   S GT   PS  S+S  G+ P+S S
Sbjct:    1 MERYGRPGEEGSRSDPSLEWTSHGGETAVEAPMWRLGLSGGGGGGGGGESYPERPDEPDCIYYLRTGVCGYGSRCRFNHPRDRGAVIGGVRGEAGALPERMGHPVCQHFMRTGTCKFGASCKYHHPRQGGGGGSVAPVSLSYLGYPLRPGEKECSYYLRTGQCKFGLTCRFNHPVPLAVQGPPQQ--PQQQQPQPQPQLQTIYPTLQSQSIPSSQQYGLVLTRPSFLTGSYLQSPYGPPMVLPPGMVPYSGWNPYQASLSAMPSPGT--QPSIGSSSIYGLTPLSPS 283          

HSP 2 Score: 94.7449 bits (234), Expect = 1.307e-18
Identity = 38/76 (50.00%), Postives = 51/76 (67.11%), Query Frame = 2
Query:  560 EFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHH 787
            EFP+R  QP CQY+MRTG CK+G+SC+YHHP       + + L+  G PLRPG  +C+++ +   CKFG  CKF H
Sbjct:  303 EFPQRPDQPECQYFMRTGDCKFGSSCRYHHPVDAVPPKTGIVLSSIGLPLRPGVAQCTHFAQHGICKFGPACKFDH 378          

HSP 3 Score: 71.2478 bits (173), Expect = 1.547e-11
Identity = 31/100 (31.00%), Postives = 53/100 (53.00%), Query Frame = 2
Query:  416 AESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRP 715
            ++ +P+RPD+ +C +++RTG C +GS CR++HP D               P R G   C ++ + G CK+G +CK+ H    + S S  + +    P+ P
Sbjct:  301 SKEFPQRPDQPECQYFMRTGDCKFGSSCRYHHPVDAVPPKTGIVLSSIGLPLRPGVAQCTHFAQHGICKFGPACKFDHSMSSSLSYSPSASSLTDMPVAP 400          
BLAST of DY263041 vs. ExPASy Swiss-Prot
Match: C3H58_ARATH (Zinc finger CCCH domain-containing protein 58 OS=Arabidopsis thaliana GN=At5g18550 PE=2 SV=1)

HSP 1 Score: 292.738 bits (748), Expect = 3.270e-78
Identity = 151/287 (52.61%), Postives = 186/287 (64.81%), Query Frame = 2
Query:  296 MERHGRVSEG-SQSDPSPEWTAPGTETGPEEPLWQLGL---GVGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAG--SVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPAGVPAPTPSXXXXXXXXXXXXXXXXXXXXXQSPSVPSAQQYGGNNCKASFFAWFICEGPYGPGAVF--SSMVFFGGLDSKCNFLNPNSSSGTGFHPSFESASFLGIYPISASTP 1132
            MER+G   E  S+SDPS EW+A GTETG E  +W+LGL   G G E++PERPDE DCI+Y+RTG C YGSRCRFNHPR+R  V+G  R   GEFPER+GQPVCQ++MRTGTCK+GASCKYHHPRQG G  SV+ VSLNY G+PLRPGEKECSY+M+T QCKFG+TC++HHP P GV AP+                       QS +VPS+QQYG    +         + PYG G +     MV + G +     ++   S GT   PS  ++S  GI P+S S P
Sbjct:    1 MERYGGAGEDESRSDPSHEWSAQGTETGIEASMWRLGLRGGGGGGETFPERPDEPDCIYYLRTGVCGYGSRCRFNHPRNRAPVLGGLRTEAGEFPERMGQPVCQHFMRTGTCKFGASCKYHHPRQGGGGDSVTPVSLNYMGFPLRPGEKECSYFMRTGQCKFGSTCRYHHPVPPGVQAPSQQ------QQQQLSAGPTMYPSLQSQTVPSSQQYGVVLARPQLLPGSYVQSPYGYGQMVLPPGMVPYSGWNPYQASVSAMPSPGT--QPSMGTSSVYGITPLSPSAP 279          

HSP 2 Score: 90.8929 bits (224), Expect = 1.887e-17
Identity = 39/87 (44.83%), Postives = 57/87 (65.52%), Query Frame = 2
Query:  563 FPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPAGVPAPTPS 823
            FP+R  QP CQY+MRTG CK+G SC++HHP + A   ++ +L++ G PLRPG   C+++ +   CKFG  CKF H   +   + +PS
Sbjct:  297 FPQRPEQPECQYFMRTGDCKFGTSCRFHHPMEAASPEAS-TLSHIGLPLRPGAVPCTHFAQHGICKFGPACKFDHSLGSSSLSYSPS 382          

HSP 3 Score: 75.485 bits (184), Expect = 8.204e-13
Identity = 37/118 (31.36%), Postives = 66/118 (55.93%), Query Frame = 2
Query:  353 TAPGTETGPEEPLWQLGLGVGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYP 706
            +AP  ++GP       G+    +++P+RP++ +C +++RTG C +G+ CRF+HP +  S   +  +  G  P R G   C ++ + G CK+G +CK+ H      S+ + SL+Y   P
Sbjct:  277 SAPAYQSGPSST----GVSNKEQTFPQRPEQPECQYFMRTGDCKFGTSCRFHHPMEAASPEASTLSHIG-LPLRPGAVPCTHFAQHGICKFGPACKFDH------SLGSSSLSYSPSP 383          
BLAST of DY263041 vs. ExPASy Swiss-Prot
Match: C3H32_ARATH (Zinc finger CCCH domain-containing protein 32 OS=Arabidopsis thaliana GN=At2g47850 PE=2 SV=2)

HSP 1 Score: 244.588 bits (623), Expect = 1.021e-63
Identity = 124/278 (44.60%), Postives = 164/278 (58.99%), Query Frame = 2
Query:  323 GSQSDPSPEWTAPGTETGPEEPLWQLGLGVGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPAGVPAPTPSXXXXXXXXXXXXXXXXXXXXXQSPSVPS--AQQYGGNNCK----ASFFAWFICEGPYGPGAVFSSMVFFGGLDSKCNFLNPNSSSGTGFHPSFESASFLGIYPISASTPGL 1138
            GSQS  +P+WT    +TG +E +W+LGLG  ++SYPERP   DC +Y+RTG C YG+RCR+NHPRDR SV    RA G ++PER G+P CQ+Y++TGTCK+GASCK+HHP+   GS+S+V LN YGYP+R G+ ECSYY+KT QCKFG TCKFHHPQPAG   P P                        PSV S    QYGG +       +       +G YGP  +   +V   G       ++P  S G     +  + S  G+  ++++TP L
Sbjct:   10 GSQSAQAPDWTPADADTGLQESMWRLGLG--SDSYPERPGAPDCAYYMRTGVCGYGNRCRYNHPRDRASVEATVRATG-QYPERFGEPPCQFYLKTGTCKFGASCKFHHPKNAGGSMSHVPLNIYGYPVREGDNECSYYLKTGQCKFGITCKFHHPQPAGTTVPPPPASAPQFY----------------PSVQSLMPDQYGGPSSSLRVARTLLPGSYMQGAYGPMLLTPGVVPIPGWSPYSAPVSPALSPGA--QHAVGATSLYGVTQLTSTTPSL 266          

HSP 2 Score: 105.145 bits (261), Expect = 9.669e-22
Identity = 42/76 (55.26%), Postives = 55/76 (72.37%), Query Frame = 2
Query:  563 FPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHP 790
            FPER G+P CQYY++TG CK+G SCK+HHPR      +N  L+  G PLRPG + C++Y++   CKFG+TCKF HP
Sbjct:  286 FPERPGEPECQYYLKTGDCKFGTSCKFHHPRDRVPPRANCVLSPIGLPLRPGVQRCTFYVQNGFCKFGSTCKFDHP 361          

HSP 3 Score: 78.9518 bits (193), Expect = 7.420e-14
Identity = 31/78 (39.74%), Postives = 49/78 (62.82%), Query Frame = 2
Query:  419 ESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHP 652
            +++PERP E +C +Y++TG C +G+ C+F+HPRDR              P R G   C +Y++ G CK+G++CK+ HP
Sbjct:  284 QAFPERPGEPECQYYLKTGDCKFGTSCKFHHPRDRVPPRANCVLSPIGLPLRPGVQRCTFYVQNGFCKFGSTCKFDHP 361          
BLAST of DY263041 vs. ExPASy Swiss-Prot
Match: C3H6_ORYSJ (Zinc finger CCCH domain-containing protein 6 OS=Oryza sativa subsp. japonica GN=Os01g0258700 PE=2 SV=2)

HSP 1 Score: 208.379 bits (529), Expect = 8.110e-53
Identity = 122/295 (41.36%), Postives = 153/295 (51.86%), Query Frame = 2
Query:  368 ETGPEEPLWQLGLGVG--------------AESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVM---GAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPAGVPAPTPSXXXXXXXXXXXXXXXXXXXXXQSPSVPSAQQYGGNNCKASFFAWFICEGPYGPGA----------VFSSMVFFGGLDSKCNFLNPNSSSGT------------GFHPSFESASFLGIYPISASTPG 1135
            +TG E P+W++GLG G              A   PERP E DC++Y+RTG C +G RCR+NHPRDRG      GA  A   ++PER GQP+C+YYM+TGTCK+G +CKYHHP+Q  G+V  V LN  G+P+R GEKECSYYMKT QCKFG TCKFHHP+  GVP  TP                      QSPS+ S   Y      AS   W +   P  PG+          + S M+   G       +NP  S G             G H S  + ++ G Y   AS+ G
Sbjct:   23 DTGLEGPMWRMGLGGGGGGGGGGGGGDGDAAGRLPERPGEEDCVYYLRTGACGFGDRCRYNHPRDRGGTEFGGGARNAAALDYPERAGQPICEYYMKTGTCKFGTNCKYHHPKQD-GAVLPVMLNNSGFPIRLGEKECSYYMKTGQCKFGTTCKFHHPEFGGVPM-TPG----------------IYPPLQSPSIASPHPY------ASLANWQMGRPPVVPGSYIPGSYTPMMLSSGMIPLQGWSPYPASVNPVVSGGAQQNVQAGPVYGMGHHGSSSTIAYGGPYVPYASSTG 293          

HSP 2 Score: 104.375 bits (259), Expect = 1.649e-21
Identity = 42/76 (55.26%), Postives = 53/76 (69.74%), Query Frame = 2
Query:  563 FPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHP 790
            FPER GQP CQYYMRTG CK+GA+CKYHHPR+ +   S   +N    PLRPG + C+YY +   C++G  CK+ HP
Sbjct:  304 FPERPGQPDCQYYMRTGDCKFGATCKYHHPRELSAPKSGYMVNSLCLPLRPGAQPCAYYAQNGYCRYGVACKYDHP 379          

HSP 3 Score: 80.8777 bits (198), Expect = 1.953e-14
Identity = 36/97 (37.11%), Postives = 52/97 (53.61%), Query Frame = 2
Query:  425 YPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRP 715
            +PERP + DC +Y+RTG C +G+ C+++HPR+  +            P R G   C YY + G C+YG +CKY HP  G    S  +L     P+ P
Sbjct:  304 FPERPGQPDCQYYMRTGDCKFGATCKYHHPRELSAPKSGYMVNSLCLPLRPGAQPCAYYAQNGYCRYGVACKYDHP-MGTLGYSPSALPLSDMPIAP 399          
BLAST of DY263041 vs. ExPASy Swiss-Prot
Match: C3H63_ORYSJ (Zinc finger CCCH domain-containing protein 63 OS=Oryza sativa subsp. japonica GN=Os11g0472000 PE=2 SV=2)

HSP 1 Score: 208.379 bits (529), Expect = 8.110e-53
Identity = 94/170 (55.29%), Postives = 118/170 (69.41%), Query Frame = 2
Query:  308 GRVSEGSQSDPSPEWTAPGTETGP----EEPLWQLGLGVGAES--YPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPA 799
            G V EGS S  +    A     GP    EE +WQ+ LG   E+  YPER  E DC +Y+RTG C +G  C+FNHP DR   + AAR  G E+P+R+GQP CQYY++TGTCK+GA+CK+HHPR+ A   + V LN  GYPLRP EKEC+YY++T QCKFG+TCKFHHPQP+
Sbjct:    8 GGVGEGSSSSAAAAAAAAAATIGPHVVDEEAMWQMNLGEAMEAGPYPERIGEPDCSYYMRTGLCRFGMTCKFNHPADRKMAVAAARMKG-EYPQRIGQPECQYYLKTGTCKFGATCKFHHPREKAAIATRVQLNALGYPLRPNEKECAYYLRTGQCKFGSTCKFHHPQPS 176          

HSP 2 Score: 99.7525 bits (247), Expect = 4.062e-20
Identity = 41/76 (53.95%), Postives = 52/76 (68.42%), Query Frame = 2
Query:  563 FPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHP 790
            FPER  QP CQ+YM+TG CK+GA CK+HHP++      N +L+  G PLRPGE  C++Y +   CKFG  CKF HP
Sbjct:  306 FPERPDQPECQFYMKTGDCKFGAVCKFHHPKERIIPTPNCALSSLGLPLRPGEPICTFYSRYGICKFGPNCKFDHP 381          

HSP 3 Score: 82.0333 bits (201), Expect = 8.765e-15
Identity = 41/112 (36.61%), Postives = 62/112 (55.36%), Query Frame = 2
Query:  323 GSQSDPSPEWTAPGTETGPEEPLWQLGL-GVGAES-YPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHP 652
            GS+   +P     G  +  +     LGL  V  ES +PERPD+ +C  Y++TG C +G+ C+F+HP++R              P R G+P+C +Y R G CK+G +CK+ HP
Sbjct:  270 GSRHSETPNMGDQGMFSSYQAGSVPLGLYTVQRESIFPERPDQPECQFYMKTGDCKFGAVCKFHHPKERIIPTPNCALSSLGLPLRPGEPICTFYSRYGICKFGPNCKFDHP 381          
BLAST of DY263041 vs. ExPASy Swiss-Prot
Match: C3H5_ORYSJ (Zinc finger CCCH domain-containing protein 5 OS=Oryza sativa subsp. japonica GN=Os01g0257400 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 1.295e-50
Identity = 125/323 (38.70%), Postives = 171/323 (52.94%), Query Frame = 2
Query:  365 TETGPEEPLWQLGLG---------VGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGG------EFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPAGVPAPTPSXXXXXXXXXXXXXXXXXXXXXQSPSVPSAQQYGGNNCKASFFAWFICEGPYGPGAVFSSMVFFGGLDSKCNFLNP-NSSSGTGFHPSFESASFLGIY---PISASTPGLNWELFKFLPFSFLVFSKRNLQREISFSRKNPGGQKKSSIYI**KTG 1276
            T+TG EE +W++GLG         V A   PERP EADC++Y+RTG C YG  CR+NHPRDR +   A   GGG      E+PER GQPVC+YYM+ GTCK+G++CKY HPR+G  SV  V LN  GYPLR GEK+C+YY+KT  CKFG+TCKFHHP+  GV + TP+                      S S P     G    +          G Y P  + S++V   G +    +++P N  +  G H + ++  F G+    P +A T G      ++ P S       + ++E +F  +   GQ +   Y+  KTG
Sbjct:   19 TDTGLEESMWRMGLGGGGGGGGEAVAAGRLPERPGEADCVYYLRTGACGYGENCRYNHPRDRAAA--AVLNGGGKTTHSAEYPERPGQPVCEYYMKNGTCKFGSNCKYDHPREG--SVQAVMLNSSGYPLRSGEKDCTYYVKTGHCKFGSTCKFHHPEIGGV-SETPNMYPPVQPQPI------------SSSHPYQHLAGWQMGRPPVLPGSFLSGSYPPMMLPSTVVPMQGWNP---YISPVNQVASAGGHQTVQAGPFYGLSHQGPSAAVTYG-----SQYAPLSSSTMPSSSSKQEPAFPAR--PGQPECQYYL--KTG 312          

HSP 2 Score: 103.99 bits (258), Expect = 2.154e-21
Identity = 45/87 (51.72%), Postives = 58/87 (66.67%), Query Frame = 2
Query:  563 FPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPAGVPAPTPS 823
            FP R GQP CQYY++TG+CK+G++CKYHHP+      SN  L+  G PLRPG + C+YY +   CKFG TCKF HP      +P+ S
Sbjct:  296 FPARPGQPECQYYLKTGSCKFGSACKYHHPQYLNTPKSNCMLSPLGLPLRPGSQPCAYYTQHGFCKFGPTCKFDHPMGTLSYSPSAS 382          

HSP 3 Score: 74.3294 bits (181), Expect = 1.828e-12
Identity = 41/134 (30.60%), Postives = 65/134 (48.51%), Query Frame = 2
Query:  314 VSEGSQSDPSPEWTAPGTETGPEEPLWQLGLGVGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRP 715
            V+ GSQ  P    T P + +  +EP           ++P RP + +C +Y++TG C +GS C+++HP+   +            P R G   C YY + G CK+G +CK+ HP  G  S S  + +    P+ P
Sbjct:  271 VTYGSQYAPLSSSTMPSSSS-KQEP-----------AFPARPGQPECQYYLKTGSCKFGSACKYHHPQYLNTPKSNCMLSPLGLPLRPGSQPCAYYTQHGFCKFGPTCKFDHP-MGTLSYSPSASSITDLPIAP 391          
BLAST of DY263041 vs. ExPASy Swiss-Prot
Match: C3H66_ORYSJ (Zinc finger CCCH domain-containing protein 66 OS=Oryza sativa subsp. japonica GN=Os12g0405100 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 3.526e-48
Identity = 90/177 (50.85%), Postives = 117/177 (66.10%), Query Frame = 2
Query:  323 GSQSDPSPEWTAPGTET------GP--------EEPLWQLGLGVG----AESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPA 799
            G + D +   T+PG  +      GP        EE +WQ+ LG G    +  YPER  E DC +Y+RTG C +G  C+FNHP +R   + AAR  G E+P RVGQP CQYY++TGTCK+GA+CK+HHPR+ A   + V LN  GYP+RP EKEC+YY++T QCKF +TCKFHHPQP+
Sbjct:   11 GGEGDSNGGGTSPGGVSAAAPAIGPHHLGVAAAEEAMWQMTLGGGESMESTPYPERIGEPDCSYYMRTGLCRFGMTCKFNHPPNRKLAVAAARMNG-EYPYRVGQPECQYYLKTGTCKFGATCKFHHPREKAALANRVQLNVLGYPMRPNEKECAYYLRTGQCKFASTCKFHHPQPS 186          

HSP 2 Score: 102.834 bits (255), Expect = 4.799e-21
Identity = 43/80 (53.75%), Postives = 53/80 (66.25%), Query Frame = 2
Query:  551 GGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHP 790
            G   FPER  QP CQ+YM+TG CK+GA CK+HHP++      N +LN  G PLRPGE  C++Y +   CKFG  CKF HP
Sbjct:  311 GENIFPERPDQPECQFYMKTGDCKFGAVCKFHHPKERLVPAPNCALNSLGLPLRPGEPVCTFYSRYGICKFGPNCKFDHP 390          

HSP 3 Score: 82.8037 bits (203), Expect = 5.139e-15
Identity = 33/80 (41.25%), Postives = 49/80 (61.25%), Query Frame = 2
Query:  413 GAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHP 652
            G   +PERPD+ +C  Y++TG C +G+ C+F+HP++R              P R G+PVC +Y R G CK+G +CK+ HP
Sbjct:  311 GENIFPERPDQPECQFYMKTGDCKFGAVCKFHHPKERLVPAPNCALNSLGLPLRPGEPVCTFYSRYGICKFGPNCKFDHP 390          
BLAST of DY263041 vs. ExPASy Swiss-Prot
Match: C3H33_ARATH (Zinc finger CCCH domain-containing protein 33 OS=Arabidopsis thaliana GN=ZFN1 PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 1.026e-47
Identity = 81/143 (56.64%), Postives = 104/143 (72.73%), Query Frame = 2
Query:  380 EEPLWQLGLG----VGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQP 796
            ++ +WQ+ L     +   SYPERP E DC +Y+RTG C +GS CRFNHPRDR  V+  AR  G E+PER+GQP C+YY++TGTCK+G +CK+HHPR  AG    VSLN  GYPLR  E +C+Y+++T  CKFG TCKF+HPQP
Sbjct:   18 QDAMWQMNLSSDETMETGSYPERPGEPDCSYYIRTGLCRFGSTCRFNHPRDRELVIATARMRG-EYPERIGQPECEYYLKTGTCKFGVTCKFHHPRNKAGIAGRVSLNMLGYPLRSNEVDCAYFLRTGHCKFGGTCKFNHPQP 159          

HSP 2 Score: 98.2117 bits (243), Expect = 1.182e-19
Identity = 41/76 (53.95%), Postives = 50/76 (65.79%), Query Frame = 2
Query:  563 FPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHP 790
            FPER GQP CQ+YM+TG CK+G  CK+HHPR       +  L+  G PLRPGE  C +Y +   CKFG +CKF HP
Sbjct:  271 FPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQAPPPDCLLSSIGLPLRPGEPLCVFYTRYGICKFGPSCKFDHP 346          

HSP 3 Score: 85.1149 bits (209), Expect = 1.035e-15
Identity = 42/119 (35.29%), Postives = 63/119 (52.94%), Query Frame = 2
Query:  296 MERHGRVSEGSQSDPSPEWTAPGTETGPEEPLWQLGLGVGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHP 652
            ++++  +  GSQS  S     PG+      PL           +PERP + +C  Y++TG C +G+ C+F+HPRDR +            P R G+P+C +Y R G CK+G SCK+ HP
Sbjct:  232 LQQNETIESGSQSQGSFSGYNPGSSV----PLGGYYALPRENVFPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQAPPPDCLLSSIGLPLRPGEPLCVFYTRYGICKFGPSCKFDHP 346          
BLAST of DY263041 vs. ExPASy Swiss-Prot
Match: ZFNL_PEA (Zinc finger CCCH domain-containing protein ZFN-like OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 1.340e-47
Identity = 82/150 (54.67%), Postives = 108/150 (72.00%), Query Frame = 2
Query:  368 ETGPEEPLWQLGLG----VGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPAGV 805
            +T P+E +WQ+ L     + +  YPE P E DC +Y+RTG C +G+ CRFNHP +R   +  AR  G EFPER+GQP CQYY++TGTCK+GA+C++HHP+  AG    V+LN  GYPLRP E E +YY++T QCKFG TCKFHHPQP+ +
Sbjct:    4 DTIPQEAMWQMNLRSSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARMKG-EFPERLGQPECQYYLKTGTCKFGATCRFHHPKDKAGVAGRVALNILGYPLRPNESERAYYLRTGQCKFGNTCKFHHPQPSNM 152          

HSP 2 Score: 95.5153 bits (236), Expect = 7.661e-19
Identity = 40/76 (52.63%), Postives = 51/76 (67.11%), Query Frame = 2
Query:  563 FPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHP 790
            FPER  QP CQ+YM+TG CK+GA C++HHPR+      +  L+  G PLRPGE  C +Y +   CKFG +CKF HP
Sbjct:  275 FPERPDQPECQFYMKTGDCKFGAVCRFHHPRERQIPAPDCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHP 350          

HSP 3 Score: 82.8037 bits (203), Expect = 5.139e-15
Identity = 34/76 (44.74%), Postives = 48/76 (63.16%), Query Frame = 2
Query:  425 YPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHP 652
            +PERPD+ +C  Y++TG C +G+ CRF+HPR+R              P R G+P+C +Y R G CK+G SCK+ HP
Sbjct:  275 FPERPDQPECQFYMKTGDCKFGAVCRFHHPRERQIPAPDCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHP 350          
BLAST of DY263041 vs. ExPASy Swiss-Prot
Match: C3H12_ORYSJ (Zinc finger CCCH domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=Os01g0917400 PE=2 SV=2)

HSP 1 Score: 188.734 bits (478), Expect = 6.649e-47
Identity = 86/168 (51.19%), Postives = 108/168 (64.29%), Query Frame = 2
Query:  338 PSPEWTAPGTETGPEEP-----------LWQLGLGVGAES-----YPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQ 793
            P P    P T    +EP           +WQ     G+ +     YPER  E DC +Y+RTG C +G  CRFNHP+DR   + +AR  G E+PER+GQP CQYY++TGTCK+G +CK+HHPR+ AG    V LN  GYPLRP EKEC+YY+KT QCK+G TCKFHHP+
Sbjct:   32 PPPPSQLPATAAATDEPSHDPAALYGEGMWQQMTMSGSGAMQPGPYPERSGEPDCTYYLRTGLCRFGMSCRFNHPQDRNLAIASARMKG-EYPERMGQPECQYYLKTGTCKFGPTCKFHHPREKAGIAGRVQLNTLGYPLRPSEKECAYYLKTGQCKYGNTCKFHHPE 198          

HSP 2 Score: 101.679 bits (252), Expect = 1.069e-20
Identity = 47/86 (54.65%), Postives = 56/86 (65.12%), Query Frame = 2
Query:  563 FPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHP---QPAGVPA 811
            FPER  QP CQYYM+TG CK+GA CK+HHPR  +    +  L+  G PLRPGE+ C +Y +   CKFGA CKF HP    P GV A
Sbjct:  329 FPERPDQPECQYYMKTGDCKFGAVCKFHHPRVRSMPTPDCVLSPVGLPLRPGEELCKFYSRYGICKFGANCKFDHPTMAPPMGVYA 414          

HSP 3 Score: 81.2629 bits (199), Expect = 1.495e-14
Identity = 32/76 (42.11%), Postives = 49/76 (64.47%), Query Frame = 2
Query:  425 YPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHP 652
            +PERPD+ +C +Y++TG C +G+ C+F+HPR R              P R G+ +C++Y R G CK+GA+CK+ HP
Sbjct:  329 FPERPDQPECQYYMKTGDCKFGAVCKFHHPRVRSMPTPDCVLSPVGLPLRPGEELCKFYSRYGICKFGANCKFDHP 404          
The following BLAST results are available for this feature:
BLAST of DY263041 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
C3H34_ARATH8.604e-7953.66Zinc finger CCCH domain-containing protein 34 OS=A... [more]
C3H58_ARATH3.270e-7852.61Zinc finger CCCH domain-containing protein 58 OS=A... [more]
C3H32_ARATH1.021e-6344.60Zinc finger CCCH domain-containing protein 32 OS=A... [more]
C3H6_ORYSJ8.110e-5341.36Zinc finger CCCH domain-containing protein 6 OS=Or... [more]
C3H63_ORYSJ8.110e-5355.29Zinc finger CCCH domain-containing protein 63 OS=O... [more]
C3H5_ORYSJ1.295e-5038.70Zinc finger CCCH domain-containing protein 5 OS=Or... [more]
C3H66_ORYSJ3.526e-4850.85Zinc finger CCCH domain-containing protein 66 OS=O... [more]
C3H33_ARATH1.026e-4756.64Zinc finger CCCH domain-containing protein 33 OS=A... [more]
ZFNL_PEA1.340e-4754.67Zinc finger CCCH domain-containing protein ZFN-lik... [more]
C3H12_ORYSJ6.649e-4751.19Zinc finger CCCH domain-containing protein 12 OS=O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA10CF05RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263041 ID=DY263041; Name=DY263041; organism=Citrus clementina; type=EST; length=1344bp
AAAGTGTATGTGTGTGTGTGTGTGTGTGTGTGAGTGTTGAGTGAAAGAAA
GTAGAGAGAGAAAAATCAGAAACCCAAAAACCCCCCATAGCCAAACAGAA
CATAAACGCAGTTCGTGTTCGTGTCTTTGCAAAGAAGAAGAGAAAACGAG
CACACACAAACACGAACGGGCAGTTTTTCTCTCCGATTCGATCGGGGACT
CTCATTGTACATACATTCAATAATTCTCCTTCTCTCCGGTTAGCCTTCTT
TTTCTGCTCTATCCCGGTTCAGTTCGGTTCGACTGCCCGTGCGAAATGGA
GCGGCACGGTCGGGTCAGTGAAGGCTCTCAGTCCGATCCGTCTCCGGAAT
GGACCGCTCCGGGAACCGAAACCGGTCCCGAAGAGCCTTTGTGGCAATTA
GGATTGGGAGTCGGTGCCGAGTCATATCCAGAGCGGCCTGACGAGGCCGA
TTGTATTCATTATGTGAGGACGGGGTTCTGCGCGTACGGGTCGAGGTGTC
GGTTCAATCATCCACGTGACCGCGGCTCGGTTATGGGAGCTGCAAGAGCA
GGTGGAGGCGAATTTCCGGAGCGGGTGGGCCAGCCAGTTTGTCAGTATTA
TATGAGGACTGGGACATGTAAATATGGTGCATCGTGTAAATACCACCATC
CCAGGCAGGGAGCTGGTTCTGTTAGCAATGTGTCATTAAATTATTATGGT
TACCCTTTGCGTCCGGGTGAAAAAGAATGTTCCTACTATATGAAAACAAG
GCAATGTAAGTTCGGTGCAACATGTAAATTCCATCATCCACAGCCAGCAG
GTGTGCCAGCTCCAACACCATCTCCTGCACTTCAAGTTGCCGCTGTGCCC
ACGCCAGTACCTGCACCCGCATTGTATCCTCCGCTGCAGTCTCCATCTGT
TCCTTCGGCTCAACAATATGGGGGTAATAATTGCAAGGCCTCCTTCTTTG
CATGGTTCATATGTGAAGGTCCTTATGGTCCTGGGGCGGTTTTCTCCAGC
ATGGTTTTCTTTGGAGGGTTGGATTCCAAATGCAACTTCTTAAATCCCAA
TTCCTCCTCTGGGACTGGGTTTCATCCTTCGTTTGAATCAGCCTCCTTTT
TGGGGATATACCCAATTTCCGCTTCTACACCCGGTTTAAACTGGGAACTA
TTTAAATTTCTCCCTTTTTCCTTTTTGGTTTTTTCGAAGCGAAATTTACA
AAGGGAAATCTCCTTTTCTCGGAAAAACCCCGGGGGGCAAAAAAAAAGTA
GCATTTATATATAATAGAAAACAGGGGGGGATTGTGGGATAATTTGTTGG
GTGTTCCCCTCGGGTGTGAAATTTTATATTTTCCTCCTCTCCCC
back to top