DY263057

Overview
NameDY263057
Unique NameDY263057
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1158
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263057 vs. ExPASy Swiss-Prot
Match: SDP6_ARATH (Glycerol-3-phosphate dehydrogenase SDP6, mitochondrial OS=Arabidopsis thaliana GN=SDP6 PE=1 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 1.815e-72
Identity = 140/191 (73.30%), Postives = 159/191 (83.25%), Query Frame = 2
Query:  374 MSATRIRRFGA---VLAAAAGGTSILLFTRPSIAGNDRGPSP--DLVRSQIKNSKAVVPSRVVQESALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIKNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVA 931
            MS   IRR  A   V+AAA+GG    ++  PS+A +D+G  P  D +R ++ +  A VPSR  QESALIAA  S+PLD+LVIGGGATG GVALDA TRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ+I+NAPHL +ALPCMTPCFDWFEV+Y+W+GLKMYDLVA
Sbjct:    1 MSLASIRRLAAGAAVIAAASGGA---VYLSPSVASSDKGGGPILDSLRRRLGDPTASVPSRSAQESALIAATASDPLDVLVIGGGATGSGVALDAVTRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQLIENAPHLCHALPCMTPCFDWFEVIYFWMGLKMYDLVA 188          

HSP 2 Score: 24.6386 bits (52), Expect = 1.815e-72
Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = 3
Query:  975 SAELFPTLCMKAKNRTWKG 1031
            S ELFPTL  K K++  +G
Sbjct:  204 SIELFPTLARKGKDKNLRG 222          
BLAST of DY263057 vs. ExPASy Swiss-Prot
Match: GPDM_MOUSE (Glycerol-3-phosphate dehydrogenase, mitochondrial OS=Mus musculus GN=Gpd2 PE=1 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 5.262e-42
Identity = 85/133 (63.91%), Postives = 102/133 (76.69%), Query Frame = 2
Query:  533 PSRVVQESALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIKNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVA 931
            PSR   E+ L+   N+   DILVIGGGATGCG ALDA TRGL+  LVER+DFSSGTSSRSTKLIHGGVRYL+KA+ NLD  Q ++V  AL ER  +++ APHLS  LP M P + W+++ YYWVG+KMYDLVA
Sbjct:   55 PSR---EAQLMTLKNTPEFDILVIGGGATGCGCALDAVTRGLKTALVERDDFSSGTSSRSTKLIHGGVRYLQKAIMNLDVEQYRMVKEALHERANLLEIAPHLSAPLPIMLPLYKWWQLPYYWVGIKMYDLVA 184          
BLAST of DY263057 vs. ExPASy Swiss-Prot
Match: GPDM_RAT (Glycerol-3-phosphate dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Gpd2 PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.531e-41
Identity = 84/133 (63.16%), Postives = 102/133 (76.69%), Query Frame = 2
Query:  533 PSRVVQESALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIKNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVA 931
            PSR   E+ L+   N++  DILVIGGGATGCG ALDA TRGL+  LVER DF+SGTSSRSTKLIHGGVRYL+KA+ NLD  Q ++V  AL ER  +++ APHLS  LP M P + W+++ YYWVG+KMYDLVA
Sbjct:   55 PSR---EAQLMTLQNTSEFDILVIGGGATGCGCALDAVTRGLKTALVERNDFASGTSSRSTKLIHGGVRYLQKAITNLDVEQYRMVKEALHERANLLEIAPHLSAPLPIMLPLYKWWQLPYYWVGIKMYDLVA 184          
BLAST of DY263057 vs. ExPASy Swiss-Prot
Match: GPDM_MESAU (Glycerol-3-phosphate dehydrogenase, mitochondrial OS=Mesocricetus auratus GN=GPD2 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 2.887e-40
Identity = 82/133 (61.65%), Postives = 101/133 (75.94%), Query Frame = 2
Query:  533 PSRVVQESALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIKNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVA 931
            PSR   E+ L+   N++  DILVIGGGATG G ALDA TRGL+  LVER+DFSSGTSSRSTKLIHGGVRYL+KA+  LD  Q ++V  AL ER  +++ APHLS  LP M P + W+++ YYWVG+K+YDLVA
Sbjct:   55 PSR---EAQLLTLQNTSEFDILVIGGGATGSGCALDAVTRGLKTALVERDDFSSGTSSRSTKLIHGGVRYLQKAIMKLDVEQYRMVKEALHERANLLEIAPHLSAPLPIMLPIYKWWQLPYYWVGIKLYDLVA 184          
BLAST of DY263057 vs. ExPASy Swiss-Prot
Match: GPDM_HUMAN (Glycerol-3-phosphate dehydrogenase, mitochondrial OS=Homo sapiens GN=GPD2 PE=1 SV=3)

HSP 1 Score: 166.392 bits (420), Expect = 2.887e-40
Identity = 82/133 (61.65%), Postives = 101/133 (75.94%), Query Frame = 2
Query:  533 PSRVVQESALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIKNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVA 931
            PSR   E+ L+   N++  DILVIGGGATG G ALDA TRGL+  LVER+DFSSGTSSRSTKLIHGGVRYL+KA+  LD  Q ++V  AL ER  +++ APHLS  LP M P + W+++ YYWVG+K+YDLVA
Sbjct:   55 PSR---EAQLLTLQNTSEFDILVIGGGATGSGCALDAVTRGLKTALVERDDFSSGTSSRSTKLIHGGVRYLQKAIMKLDIEQYRMVKEALHERANLLEIAPHLSAPLPIMLPVYKWWQLPYYWVGIKLYDLVA 184          
BLAST of DY263057 vs. ExPASy Swiss-Prot
Match: GPDM_BOVIN (Glycerol-3-phosphate dehydrogenase, mitochondrial OS=Bos taurus GN=GPD2 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 6.432e-40
Identity = 80/133 (60.15%), Postives = 101/133 (75.94%), Query Frame = 2
Query:  533 PSRVVQESALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIKNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVA 931
            PSR   E+ ++   N++  D+LVIGGGATG G ALDA TRGL+  LVER+DFSSGTSSRSTKLIHGGVRYL+KA+  LD  Q ++V  AL ER  +++ APHLS  LP M P + W+++ YYWVG+K+YDLVA
Sbjct:   55 PSR---EAQILTLKNTSEFDVLVIGGGATGSGCALDAVTRGLKTALVERDDFSSGTSSRSTKLIHGGVRYLQKAIMKLDIEQYRMVKEALHERANLLEIAPHLSAPLPIMLPIYKWWQLPYYWVGIKLYDLVA 184          
BLAST of DY263057 vs. ExPASy Swiss-Prot
Match: GPDM_MACFA (Glycerol-3-phosphate dehydrogenase, mitochondrial OS=Macaca fascicularis GN=GPD2 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 8.400e-40
Identity = 81/133 (60.90%), Postives = 101/133 (75.94%), Query Frame = 2
Query:  533 PSRVVQESALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIKNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVA 931
            PSR   E+ L+   N++  DILVIGGGATG G ALDA TRGL+  LVER+DFSSGTSSRSTKLIHGGVRYL+KA+  LD  Q ++V  AL ER  +++ APHLS  LP + P + W+++ YYWVG+K+YDLVA
Sbjct:   55 PSR---EAQLLTLQNTSEFDILVIGGGATGSGCALDAVTRGLKTALVERDDFSSGTSSRSTKLIHGGVRYLQKAIMKLDIEQYRMVKEALHERANLLEIAPHLSAPLPIVLPVYKWWQLPYYWVGIKLYDLVA 184          
BLAST of DY263057 vs. ExPASy Swiss-Prot
Match: GPDM_CAEEL (Probable glycerol-3-phosphate dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=T25G3.4 PE=2 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 4.770e-35
Identity = 86/192 (44.79%), Postives = 115/192 (59.90%), Query Frame = 2
Query:  374 MSATRIRRFG-AVLAAAAGGTSILLFTRP-----SIAGNDRGPSPDLVRSQIKNSKAVVPSRVVQESALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIKNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVA 931
            MS  R  + G AV+A +A     L  T        +  + R    D +    K + + +P+R   +  L   +     D+L+IGGGATG GVALDA TRGL+  LVE +DFSSGTSSRSTKLIHGGVRYL+ A+  LD  Q ++V  AL ER  +++ APHLS+ LP M P +  ++V YYW G+K YD V+
Sbjct:    1 MSWVRFTKTGVAVVATSAAAVLALDMTNERRFQRQVKDHFRTVHADRLAELNKRAPSALPTR---KDILTNLSKGEEFDVLIIGGGATGAGVALDAQTRGLKTALVELDDFSSGTSSRSTKLIHGGVRYLQAAIMKLDLEQYRMVKEALFERHNLLEIAPHLSSPLPIMLPIYKLWQVPYYWSGIKAYDFVS 189          
BLAST of DY263057 vs. ExPASy Swiss-Prot
Match: GPDM_SCHPO (Glycerol-3-phosphate dehydrogenase, mitochondrial OS=Schizosaccharomyces pombe GN=gut2 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.388e-34
Identity = 76/138 (55.07%), Postives = 97/138 (70.29%), Query Frame = 2
Query:  518 SKAVVPSRVVQESALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIKNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVA 931
            S A  PSR   E+ L    + +  D+L+IGGGATG GVA+DA+TRGL V L+E+ DF+S TSS+STK+ HGGVRYLEKAVF L   QL LV  AL ER  +++ APHL   LP M P + W++V Y++VG K+YD VA
Sbjct:   48 SLAPPPSR---ETLLKNVEDISKFDVLIIGGGATGTGVAVDASTRGLNVCLLEKTDFASETSSKSTKMAHGGVRYLEKAVFQLSKAQLDLVIEALNERANMLRTAPHLCTVLPIMIPVYKWWQVPYFFVGCKIYDWVA 182          
BLAST of DY263057 vs. ExPASy Swiss-Prot
Match: GPDM_YEAST (Glycerol-3-phosphate dehydrogenase, mitochondrial OS=Saccharomyces cerevisiae GN=GUT2 PE=1 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 8.996e-34
Identity = 84/187 (44.92%), Postives = 107/187 (57.22%), Query Frame = 2
Query:  371 IMSATRIRRFGAVLAAAAGGTSILLFTRPSIAGNDRGPSPDLVRSQIKNSKAVVPSRVVQESALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIKNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVA 931
            + S TR R  GA  A A    ++   T    +  DR P      S +       P +V +   L     ++  D+L+IGGGATG G ALDAATRGL V LVE+ DF+SGTSS+STK+IHGGVRYLEKA +     QL LV  AL ERK +I  APHL   LP + P +  ++V Y ++G K YD  A
Sbjct:    1 MFSVTRRRAAGAAAAMATATGTLYWMT----SQGDR-PLVHNDPSYMVQFPTAAPPQVSRRDLLDRLAKTHQFDVLIIGGGATGTGCALDAATRGLNVALVEKGDFASGTSSKSTKMIHGGVRYLEKAFWEFSKAQLDLVIEALNERKHLINTAPHLCTVLPILIPIYSTWQVPYIYMGCKFYDFFA 182          
The following BLAST results are available for this feature:
BLAST of DY263057 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
SDP6_ARATH1.815e-7273.30Glycerol-3-phosphate dehydrogenase SDP6, mitochond... [more]
GPDM_MOUSE5.262e-4263.91Glycerol-3-phosphate dehydrogenase, mitochondrial ... [more]
GPDM_RAT1.531e-4163.16Glycerol-3-phosphate dehydrogenase, mitochondrial ... [more]
GPDM_MESAU2.887e-4061.65Glycerol-3-phosphate dehydrogenase, mitochondrial ... [more]
GPDM_HUMAN2.887e-4061.65Glycerol-3-phosphate dehydrogenase, mitochondrial ... [more]
GPDM_BOVIN6.432e-4060.15Glycerol-3-phosphate dehydrogenase, mitochondrial ... [more]
GPDM_MACFA8.400e-4060.90Glycerol-3-phosphate dehydrogenase, mitochondrial ... [more]
GPDM_CAEEL4.770e-3544.79Probable glycerol-3-phosphate dehydrogenase, mitoc... [more]
GPDM_SCHPO1.388e-3455.07Glycerol-3-phosphate dehydrogenase, mitochondrial ... [more]
GPDM_YEAST8.996e-3444.92Glycerol-3-phosphate dehydrogenase, mitochondrial ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10CG09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263057 ID=DY263057; Name=DY263057; organism=Citrus clementina; type=EST; length=1158bp
AACAAACGAAACGAACAACGGTGACTCCGAAAGGTCACGCGTACGCGCGC
ATTCACGGAGTTCGCTTTCTTCATCGTCCTCTTTACTTTTAATGCTCAGT
CACAAAGCAGCCCTGCCATACCATGCACCTTTATGTGCCACGTGGAGCCA
TAGTGGGGCCCACATCAGCGCAATTACTTAAAAGCTCACAGTACTTCTAC
TTCTCTCGTTCTTTATGGCAACAAAATGGGGTATTTCAGTAAATTATGAA
ACTATTATAATGCTCAAGAGCGATTCCCAACGCAAGCTTGATTTGCTGGC
TGCCGTTAACTGAATCACTACCATTTTTTACTCTTTGCGCCAACTCTGCT
GCAATCTAGGACTCCACACTATCATGTCCGCCACTCGCATCCGCCGCTTC
GGCGCCGTACTCGCCGCCGCTGCCGGCGGAACCTCCATCCTCCTCTTCAC
GCGTCCCTCCATCGCCGGAAACGACCGGGGTCCCTCGCCCGACCTCGTCA
GGAGCCAGATCAAAAATTCGAAAGCCGTTGTTCCGTCGAGAGTCGTCCAG
GAGTCTGCTTTGATTGCCGCAAACAACAGTAATCCTCTTGACATTCTTGT
TATTGGCGGTGGCGCCACTGGATGCGGCGTTGCGCTCGACGCTGCGACGC
GAGGACTTCGCGTTGGCCTTGTCGAGAGAGAGGATTTCTCCTCCGGAACG
TCTTCACGATCCACGAAACTGATTCATGGAGGAGTCCGCTACTTGGAGAA
GGCTGTGTTTAATCTTGACTATGGTCAACTGAAGCTGGTATTCCATGCAC
TTGAGGAGCGTAAACAGGTTATTAAGAATGCACCGCATCTCAGCAATGCT
TTGCCTTGCATGACACCCTGTTTTGACTGGTTTGAAGTAGTATACTACTG
GGTGGGGCTGAAAATGTACGATTTGGTCGCAAGAAGACATCTGTTACATT
TAACTAGATATTATCTGGCACAGATCTGCTGAGCTGTTCCCTACTCTTTG
CATGAAGGCCAAGAATAGAACTTGGAAGGGCCCAAGGGTGGTAATATAAT
GGTCAAAAGAATGAATCCTCCGCCTTAAGGTGGGAATAACAATGAACGGG
CTTCACTGGGTGGGGGCGTGGAGGGGCTTAACCCTGCCAAAAATTAAATT
TCTCTCTT
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