DY263065

Overview
NameDY263065
Unique NameDY263065
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1304
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDH_MAIZE (L-lactate dehydrogenase OS=Zea mays PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 1.019e-44
Identity = 99/193 (51.30%), Postives = 129/193 (66.84%), Query Frame = 3
Query:   66 DLTQTFFKPINHAAPPSPTKRH-----TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKLNSYTLEIQ 629
            D +  FF+P++  +  +PT +H     TK+SVIG GNVGMAIAQTILT+D  +E+ALVDA  DKLRGEMLDLQHAAAFLPRT++++  D +VT GSDL IVTAGARQI GE            F+ I+PPL + S D +LL+V NP+D+L  VA  LSG P++ V GS  NL+ S    +    L+    ++Q
Sbjct:   16 DASSGFFRPVSGDSS-TPTSQHHRRRLTKVSVIGAGNVGMAIAQTILTRDLADEIALVDAVPDKLRGEMLDLQHAAAFLPRTRLVSGTDMSVTRGSDLVIVTAGARQIQGETRLDLLQRNVALFRKIVPPLAEQSHDALLLVVSNPVDVLTYVAWKLSGFPASRVIGSGTNLDSSRFRFLLAEHLDVNAQDVQ 207          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHB_HORVU (L-lactate dehydrogenase B (Fragment) OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 1.331e-44
Identity = 97/194 (50.00%), Postives = 127/194 (65.46%), Query Frame = 3
Query:   66 DLTQTFFK------PINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKLNSYTLEIQ 629
            D +  FF+      PI H +  +P +R TK+SVIG GNVGMAIAQTILTQ+  +E+ALVDA  DKLRGE LDLQHAAAFLPR +I++  D AVT  SDL +VTAGARQI GE            ++ I+PP+ ++SPD +LL+V NP+D+L  VA  LSG P++ V GS  NL+ S    +    L+    ++Q
Sbjct:    3 DASSGFFRAVADGCPITHTSCSAPHRRLTKVSVIGAGNVGMAIAQTILTQNLADEIALVDALPDKLRGEALDLQHAAAFLPRVRIVSGTDAAVTKNSDLIVVTAGARQIPGETRLNLLQRNVALYRKIVPPVAEHSPDALLLVVSNPVDVLTYVAWKLSGFPASRVIGSGTNLDSSRFRFLVAEHLDVSAQDVQ 196          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHA_HORVU (L-lactate dehydrogenase A OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.127e-43
Identity = 101/209 (48.33%), Postives = 128/209 (61.24%), Query Frame = 3
Query:   21 MHKTXXXXXXXXXXXDLTQTFFKPINHAAPPSPT------KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKLNSYTLEIQ 629
            MHK              +  FF+P+    P +PT      +R TKISVIG GNVGMAIAQTILTQ+  +E+ALVDA  DKLRGE LDLQHAAAFLPR +I +  D AVT  SDL IVTAGARQI GE            ++ I+PP+ ++SPD +LL+V NP+D+L  VA  LSG P++ V GS  NL+ S    +    L+    ++Q
Sbjct:    1 MHKASSLSELGFDAGGASSGFFRPVADGCPATPTSSAVPHRRLTKISVIGAGNVGMAIAQTILTQNLADEIALVDALPDKLRGEALDLQHAAAFLPRVRI-SGTDAAVTKNSDLVIVTAGARQIPGETRLNLLQRNVALYRKIVPPVAEHSPDALLLVVSNPVDVLTYVAWKLSGFPASRVIGSGTNLDSSRFRFLIAEHLDVNAQDVQ 208          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHA_PELSJ (L-lactate dehydrogenase A chain OS=Pelodiscus sinensis japonicus GN=LDHA PE=2 SV=3)

HSP 1 Score: 154.836 bits (390), Expect = 1.022e-36
Identity = 85/164 (51.83%), Postives = 106/164 (64.63%), Query Frame = 3
Query:  129 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKLNSYTL 620
            H KI+V+G G VGMA A +IL +D  +ELALVD   DKLRGEMLDLQH + FL   KI++  DY+VTA S L I+TAGARQ  GE            FK IIP +VKYSPDC+LL+V NP+DIL  VA  +SG P + V GS  NL+ +    +   KL  ++L
Sbjct:   20 HNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLRGEMLDLQHGSLFLRTPKIVSGKDYSVTAHSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPDCMLLVVSNPVDILTYVAWKISGFPKHRVIGSGCNLDSARFRYLMGEKLGIHSL 183          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHA_MONDO (L-lactate dehydrogenase A chain OS=Monodelphis domestica GN=LDHA PE=2 SV=3)

HSP 1 Score: 154.451 bits (389), Expect = 1.334e-36
Identity = 84/163 (51.53%), Postives = 105/163 (64.42%), Query Frame = 3
Query:  129 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKLNSYT 617
            H KI+V+G G VGMA A +IL +D  +ELALVD   DKL+GEM+DLQH + FL   KI++S DYAVTA S L ++TAGARQ  GE            FK IIP +VKYSP+C LL+V NP+DIL  VA  LSG P N V GS  NL+ +    +   KL  ++
Sbjct:   20 HNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYAVTANSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLVVSNPVDILTYVAWKLSGFPKNRVIGSGCNLDSARFRYLMGEKLGIHS 182          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHA_DANRE (L-lactate dehydrogenase A chain OS=Danio rerio GN=ldha PE=2 SV=3)

HSP 1 Score: 154.066 bits (388), Expect = 1.743e-36
Identity = 85/179 (47.49%), Postives = 108/179 (60.34%), Query Frame = 3
Query:   69 LTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKL 605
            +  T  K I H +   P     K++V+G G VGMA A +IL +D  +ELALVD   DKL+GE +DLQH + FL   KI+A  DY+VTA S + +VTAGARQ  GE            FK IIP ++KYSP+CILL+V NP+DIL  VA  LSG P N V GS  NL+ +    +   KL
Sbjct:    1 MASTKEKLIAHVSKEQPAGPTNKVTVVGVGMVGMAAAVSILLKDLTDELALVDVMEDKLKGEAMDLQHGSLFLKTHKIVADKDYSVTANSKVVVVTAGARQQEGESRLNLVQRNVNIFKFIIPNIIKYSPNCILLVVSNPVDILTYVAWKLSGLPRNRVIGSGTNLDSARFRYLMGEKL 179          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHA_CYPCA (L-lactate dehydrogenase A chain OS=Cyprinus carpio GN=ldha PE=1 SV=3)

HSP 1 Score: 153.68 bits (387), Expect = 2.276e-36
Identity = 85/179 (47.49%), Postives = 108/179 (60.34%), Query Frame = 3
Query:   69 LTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKL 605
            +  T  K I H +   P     K++V+G G VGMA A +IL +D  +ELALVD   DKL+GE +DLQH + FL   KI+A  DY+VTA S + +VTAGARQ  GE            FK IIP ++KYSP+CILL+V NP+DIL  VA  LSG P N V GS  NL+ +    +   KL
Sbjct:    1 MASTKEKLITHVSKEEPAGPTNKVTVVGVGMVGMAAAISILLKDLTDELALVDVMEDKLKGEAMDLQHGSLFLKTHKIVADKDYSVTANSKVVVVTAGARQQEGESRLNLVQRNVNIFKFIIPNIIKYSPNCILLVVSNPVDILTYVAWKLSGLPRNRVIGSGTNLDSARFRHLMGEKL 179          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHA_SPHID (L-lactate dehydrogenase A chain OS=Sphyraena idiastes GN=ldha PE=2 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 2.973e-36
Identity = 84/174 (48.28%), Postives = 106/174 (60.92%), Query Frame = 3
Query:   87 KPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKLN 608
            K INH     P     K++V+G G VGMA A +IL +D  +ELALVD   DKL+GE++DLQH   FL   KI+   DY+VTA S + +VTAGARQ  GE            FK IIP +VKYSP+CIL++V NP+DIL  VA  LSG P + V GS  NL+ +    I   KL+
Sbjct:    6 KLINHVMKEEPIGSRNKVTVVGVGMVGMASAVSILLKDLCDELALVDVMEDKLKGEVMDLQHGGLFLKTHKIVGDKDYSVTANSRVVVVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCILMVVSNPVDILTYVAWKLSGFPRHRVIGSGTNLDSARFRHIMGEKLH 179          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDH_CAEEL (L-lactate dehydrogenase OS=Caenorhabditis elegans GN=ldh-1 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 5.071e-36
Identity = 80/160 (50.00%), Postives = 98/160 (61.25%), Query Frame = 3
Query:  129 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKLN 608
            H K++V+G G VGMA A +IL Q+   EL LVD  ADKL+GEM+DLQH  AF     + A  DY++TAGS LC+VTAGARQ  GE            FK IIP LVKYSPD  +L+V NP+D+L  V   LSG P   V GS  NL+ +    +   KLN
Sbjct:   20 HGKVTVVGVGQVGMACAYSILQQNLANELCLVDVVADKLKGEMMDLQHGLAFTRHCTVKADTDYSITAGSKLCVVTAGARQREGETRLSLVQRNVEIFKGIIPQLVKYSPDTCILVVSNPVDVLTYVTWKLSGLPRERVFGSGTNLDSARFRFLLSEKLN 179          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHA_SQUAC (L-lactate dehydrogenase A chain OS=Squalus acanthias GN=ldha PE=1 SV=4)

HSP 1 Score: 152.525 bits (384), Expect = 5.071e-36
Identity = 80/177 (45.20%), Postives = 111/177 (62.71%), Query Frame = 3
Query:   87 KPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKLNSYT 617
            K I H A     + + KI+V+G G VGMA A +IL +D  +E+ALVD   DKL+GEM+DLQH + FL   KI++  DY+V+AGS L ++TAGARQ  GE            FK IIP +VK+SPDCI+L+V NP+D+L  VA  LSG P + + GS  NL+ +    +   +L  ++
Sbjct:    7 KLIGHLATSQEPRSYNKITVVGVGAVGMACAISILMKDLADEVALVDVMEDKLKGEMMDLQHGSLFLHTAKIVSGKDYSVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPDIVKHSPDCIILVVSNPVDVLTYVAWKLSGLPMHRIIGSGCNLDSARFRYLMGERLGVHS 183          
The following BLAST results are available for this feature:
BLAST of DY263065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 335
Match NameE-valueIdentityDescription
LDH_MAIZE1.019e-4451.30L-lactate dehydrogenase OS=Zea mays PE=2 SV=1[more]
LDHB_HORVU1.331e-4450.00L-lactate dehydrogenase B (Fragment) OS=Hordeum vu... [more]
LDHA_HORVU1.127e-4348.33L-lactate dehydrogenase A OS=Hordeum vulgare PE=1 ... [more]
LDHA_PELSJ1.022e-3651.83L-lactate dehydrogenase A chain OS=Pelodiscus sine... [more]
LDHA_MONDO1.334e-3651.53L-lactate dehydrogenase A chain OS=Monodelphis dom... [more]
LDHA_DANRE1.743e-3647.49L-lactate dehydrogenase A chain OS=Danio rerio GN=... [more]
LDHA_CYPCA2.276e-3647.49L-lactate dehydrogenase A chain OS=Cyprinus carpio... [more]
LDHA_SPHID2.973e-3648.28L-lactate dehydrogenase A chain OS=Sphyraena idias... [more]
LDH_CAEEL5.071e-3650.00L-lactate dehydrogenase OS=Caenorhabditis elegans ... [more]
LDHA_SQUAC5.071e-3645.20L-lactate dehydrogenase A chain OS=Squalus acanthi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA10CH05RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263065 ID=DY263065; Name=DY263065; organism=Citrus clementina; type=EST; length=1304bp
TCAAAATCAAATCAATAATCATGCACAAAACTCCTTCAGGATCCTCACTA
GGCCCCGGCGGCCTTGACTTGACTCAAACCTTCTTCAAGCCCATTAACCA
TGCGGCCCCACCTTCCCCCACCAAGCGCCACACCAAGATCTCCGTCATTG
GCACTGGCAATGTCGGCATGGCCATTGCCCAAACCATACTCACCCAGGAC
TTCGTCGAAGAGCTCGCTCTCGTCGACGCCAAGGCCGACAAGCTACGTGG
CGAGATGCTCGATCTCCAACACGCTGCCGCTTTCCTCCCACGCACCAAAA
TCCTCGCCTCTGTTGATTACGCTGTCACAGCGGGATCCGATCTTTGTATC
GTCACCGCTGGCGCCAGGCAGATTGCTGGCGAGTCTAGGCTGAATCTCTT
GCAGAGGAATTTGTCCCTGTTTAAGGCTATTATTCCTCCGCTTGTCAAGT
ACTCACCTGACTGTATTTTGCTGATCGTACCTAACCCAATTGACATTTTG
AATTAAGTAGCGAGGAATCTATCTGGGCATCCTTCAAATTGAGTCACTGG
ATCCCACAATAATCTAAATCCATCCATGTTGAATTTAATCCAAGACTATA
AACTCAACTCATACACCTTAGAAATACAATAAATCATCACCACATACAAC
CTAAGAGCACAATAATGCTATTCCGGCCCACAAAAAAGAGAAGATAAAAT
CAGATAATATAACCATCAGTAGAAAAATAAAAATAAATGATGAACCAAAA
AATCAACCTGAATCTATACTATAGCATCACATTTTGAACAACACCTTGAG
GAAAGAACCTTGATGACAACCGCCAAACCGTCCAACACATCCCACTAATA
CTCTAAATCAAAAGTAAAGCCTACTGGCTTACAGTTTCCAGATTAACTCT
ATCAAAATTCAAAATATAAATTTAAAAATCTTATAAAATATTAACCGATT
CTAAAACCCAACGGGTTAAAAATCACAGATATGTAAGAAAAACCCAAAAA
TGTCAAAAATACTGACTTTATGCGGATAGATTGACAGTTTTGAACAAGAG
CCATAACCGACTAGAAATACATATACATTAAATTAATACATATTTAAATA
AGATTAATGACTTCTCTACTAAATTTTAGTAAAAAAATAACAGTTGATCC
CAATAATATAAAATAAATAAGTCAAAACTTCTAAAAATAATAAATAAGAA
TCATCCCATCCTTTGGAGAAATCGAACTAGTTTTTAATATCATAATCCGA
TAACATTATTCTAAAAAAAATAACATTCACACAGAGAATACCTATAATTA
AAAA
back to top