DY263089

Overview
NameDY263089
Unique NameDY263089
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1206
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263089 vs. ExPASy Swiss-Prot
Match: CHIT1_HUMAN (Chitotriosidase-1 OS=Homo sapiens GN=CHIT1 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.475e-26
Identity = 78/236 (33.05%), Postives = 121/236 (51.27%), Query Frame = 3
Query:  159 AAYWFSGSNFPVADIDSTLFTHLFCAFADLNSQNFQVTVSSENQAIFSSFTRTVQQKNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDN-----AQMSDFGTLLTEWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINPTSAISNSLDWTNVMAYDFFYNDDRTGSRITGPPAALFSPDRSQVSG-------DSGIRAWIQSGLSPRK 830
            A Y    + F   D+D +L THL  AFA +   N Q++ +  N          +++ NP +K LL+IGG N   + F  M + A +R++F++S+I   R  +F GLD+DWEYP +          F TL+ +  +A   EA++SGK  LLL+AAV     Y  A      I+ +LD+ N+MAYDF      +  ++TG  + L+   R + SG       D+ ++ W+Q G    K
Sbjct:   32 AQYRQGEARFLPKDLDPSLCTHLIYAFAGMT--NHQLSTTEWNDETLYQEFNGLKKMNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFVNLMAYDF----HGSWEKVTGHNSPLYK--RQEESGAAASLNVDAAVQQWLQKGTPASK 259          
BLAST of DY263089 vs. ExPASy Swiss-Prot
Match: CHIT1_MOUSE (Chitotriosidase-1 OS=Mus musculus GN=Chit1 PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 4.744e-25
Identity = 71/221 (32.13%), Postives = 114/221 (51.58%), Query Frame = 3
Query:  198 DIDSTLFTHLFCAFADLNSQNFQVTVSSENQAIFSSFTRTVQQKNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYP-----DNAQMSDFGTLLTEWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINPTSAISNSLDWTNVMAYDFFYNDDRTGSRITGPPAALF-----SPDRSQVSGDSGIRAWIQSGLSPRK 830
            D+D  L TH+  AFA ++  N Q++    N  +      +++ KNP +K LL++GG     + F  M + A++R++F+ S+++  R+  F GLD+DWE+P            F  L+ +   A   EA+SSGK  LLLTAAV        A      I+ SLD+ N+MAYDF  + ++T    TG  + L+     S   ++ + D+ +  W+Q G    K
Sbjct:   45 DVDPNLCTHVIFAFAGMD--NHQLSTVEHNDELLYQELNSLKTKNPKLKTLLAVGGWTFGTQKFTDMVATASNRQTFVKSALSFLRTQGFDGLDLDWEFPGGRGSPTVDKERFTALIQDLAKAFQEEAQSSGKERLLLTAAVPSDRGLVDAGYEVDKIAQSLDFINLMAYDFHSSLEKT----TGHNSPLYKRQGESGAAAEQNVDAAVTLWLQKGTPASK 259          
BLAST of DY263089 vs. ExPASy Swiss-Prot
Match: CHIA_BOVIN (Acidic mammalian chitinase OS=Bos taurus GN=CHIA PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.428e-21
Identity = 66/177 (37.29%), Postives = 93/177 (52.54%), Query Frame = 3
Query:  183 NFPVADIDSTLFTHLFCAFADLNSQNFQVTVSSENQAIFSSFTRTVQQKNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYP-----DNAQMSDFGTLLTEWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINPTSAISNSLDWTNVMAYDF 698
            +F   +ID  L THL  AFA +++     T+   + A++SSF   +++KN  +K LL+IGG N     F AM +   +RK+FI S I       F GLD DWEYP      +     F  L+ E R A   EA+ + KP LL+TAAV+   +   A      +S  LD+ +VM YDF
Sbjct:   40 SFKPDNIDPCLCTHLIYAFAGMSNSEI-TTIEWNDVALYSSFN-DLKKKNSQLKILLAIGGWNFGTAPFTAMVATPENRKTFISSVIKFLHQYGFDGLDFDWEYPGFRGSPSQDKHLFTVLVQETREAFEQEAKQTNKPRLLVTAAVAAGISNIQAGYEIPQLSQYLDFIHVMTYDF 214          
BLAST of DY263089 vs. ExPASy Swiss-Prot
Match: CHIA_RAT (Acidic mammalian chitinase OS=Rattus norvegicus GN=Chia PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 9.226e-21
Identity = 72/227 (31.72%), Postives = 103/227 (45.37%), Query Frame = 3
Query:  183 NFPVADIDSTLFTHLFCAFADLNSQNFQVTVSSENQAIFSSFTRTVQQKNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDNAQMSD-----FGTLLTEWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINPTSAISNSLDWTNVMAYDFFYN-DDRTGSRITGPPAALFSPDRSQVSGDSGIRAWIQSGLSPRK*CWGF 845
            +F   DI+  L THL  AFA +  QN Q+T    N          ++ +N  +K LL+IGG N     F  M S + +R++FI S I   R   F GLD+DWEYP +          F  L+ E R A   EA  S +P L++TAAV+   +   A      +S  LD+ +VM YD   + D  TG           +   + ++ D  +  W  +G    K   GF
Sbjct:   40 SFKPDDINPCLCTHLIYAFAGM--QNNQITTIEWNDVTLYKAFNDLKNRNSKLKTLLAIGGWNFGTAPFTTMVSTSQNRQTFITSVIKFLRQYGFDGLDLDWEYPGSRGSPPQDKHLFTVLVKELREAFEQEAIESNRPRLMVTAAVAAGISNIQAGYEIPELSQYLDFIHVMTYDLHGSWDGYTGENSPLYKLPTETGSNAYLNVDYVMNYWKDNGAPAEKLIVGF 264          

HSP 2 Score: 23.483 bits (49), Expect = 9.226e-21
Identity = 20/71 (28.17%), Postives = 32/71 (45.07%), Query Frame = 1
Query:  838 GVSIFGHSLQLANANNHGFWGSTSGTVNGWGDVI*RKSGSF-------IMSTNATKVFNATVCFE*CYKGN 1029
            G   +GH+  L+N ++ G    TSG  NG      R++G +        +   AT+ ++A       YKGN
Sbjct:  263 GFPEYGHTYILSNPSDTGIGAPTSG--NGPAGPYTRQAGFWAYYEICTFLRNGATQDWDAPQEVPYAYKGN 331          
BLAST of DY263089 vs. ExPASy Swiss-Prot
Match: CH3L1_RAT (Chitinase-3-like protein 1 OS=Rattus norvegicus GN=Chi3l1 PE=2 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 1.579e-20
Identity = 73/225 (32.44%), Postives = 111/225 (49.33%), Query Frame = 3
Query:  174 SGSNFPVADIDSTLFTHLFCAFADLNSQNFQVTVSSENQAIFSSFTRTVQQKNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDNAQMSDFGTLLTEWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINPTSAISNSLDWTNVMAYDFFYNDDRTGSRITGPPAALF------SPDRSQVSGDSGIRAWIQSGLSPRK 830
            +GS FP A +D +L TH+  +FA+++  N +++ S  N         T++ +NP +K LLS+GG +   E F+ + S A SRK+F+ S     R+  F GLD+ W YP       F TL+ E ++    E +  G   LLL+AAVS       +    + I+  LD+ N+M YDF      T    TG  + LF       PDR   + D G+   ++ G    K
Sbjct:   36 NGSCFPDA-LDHSLCTHIIYSFANIS--NNKLSTSEWNDVTLYGMLNTLKTRNPRLKTLLSVGGWSFGSERFSRIVSNAKSRKTFVQSVAPFLRTYGFDGLDLAWLYPGPKDKQHFTTLIKELKAEFTKEVQ-PGTEKLLLSAAVSAGKVTLDSGYDVAQIAQHLDFINLMTYDF----HGTWRHTTGHHSPLFRGQQDTGPDRFS-NVDYGVGYMLRLGAPTNK 251          
BLAST of DY263089 vs. ExPASy Swiss-Prot
Match: CH3L1_PONAB (Chitinase-3-like protein 1 OS=Pongo abelii GN=CHI3L1 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.694e-20
Identity = 64/174 (36.78%), Postives = 91/174 (52.30%), Query Frame = 3
Query:  177 GSNFPVADIDSTLFTHLFCAFADLNSQNFQVTVSSENQAIFSSFTRTVQQKNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDNAQMSDFGTLLTEWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINPTSAISNSLDWTNVMAYDF 698
            GS FP A ID  L TH+  +FA+++  N  +     N         T++ +NP +K LLS+GG N   + F+ +AS   SR++FI S     R+  F GLD+ W YP       F TL+ E R+    EA+  GK  LLL+AAVS       +    + IS  LD+ ++M YDF
Sbjct:   66 GSCFPDA-IDRFLCTHIIYSFANIS--NDHIDTWEWNDVTLYGMLNTLKNRNPNLKTLLSVGGWNFGSQRFSNIASNTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPGQRDKQHFTTLIKEMRAEFIKEAQ-PGKKQLLLSAAVSAGKVTIDSSYDIAKISQHLDFISIMTYDF 235          
BLAST of DY263089 vs. ExPASy Swiss-Prot
Match: CHIA_MOUSE (Acidic mammalian chitinase OS=Mus musculus GN=Chia PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 1.746e-19
Identity = 62/176 (35.23%), Postives = 87/176 (49.43%), Query Frame = 3
Query:  183 NFPVADIDSTLFTHLFCAFADLNSQNFQVTVSSENQAIFSSFTRTVQQKNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDNAQMSD-----FGTLLTEWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINPTSAISNSLDWTNVMAYD 695
            +F   DI+  L THL  AFA +  QN ++T    N          ++ +N  +K LL+IGG N     F  M S + +R++FI S I   R   F GLD+DWEYP +          F  L+ E R A   EA  S +P L++TAAV+   +   A      +S  LD+ +VM YD
Sbjct:   40 SFKPDDINPCLCTHLIYAFAGM--QNNEITTIEWNDVTLYKAFNDLKNRNSKLKTLLAIGGWNFGTAPFTTMVSTSQNRQTFITSVIKFLRQYGFDGLDLDWEYPGSRGSPPQDKHLFTVLVKEMREAFEQEAIESNRPRLMVTAAVAGGISNIQAGYEIPELSKYLDFIHVMTYD 213          
BLAST of DY263089 vs. ExPASy Swiss-Prot
Match: CH3L1_HUMAN (Chitinase-3-like protein 1 OS=Homo sapiens GN=CHI3L1 PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 1.746e-19
Identity = 61/174 (35.06%), Postives = 91/174 (52.30%), Query Frame = 3
Query:  177 GSNFPVADIDSTLFTHLFCAFADLNSQNFQVTVSSENQAIFSSFTRTVQQKNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDNAQMSDFGTLLTEWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINPTSAISNSLDWTNVMAYDF 698
            GS FP A +D  L TH+  +FA+++  N  +     N         T++ +NP +K LLS+GG N   + F+ +AS   SR++FI S     R+  F GLD+ W YP       F TL+ E ++    EA+  GK  LLL+AA+S       +    + IS  LD+ ++M YDF
Sbjct:   39 GSCFPDA-LDRFLCTHIIYSFANIS--NDHIDTWEWNDVTLYGMLNTLKNRNPNLKTLLSVGGWNFGSQRFSKIASNTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPGRRDKQHFTTLIKEMKAEFIKEAQ-PGKKQLLLSAALSAGKVTIDSSYDIAKISQHLDFISIMTYDF 208          
BLAST of DY263089 vs. ExPASy Swiss-Prot
Match: OVGP1_PIG (Oviduct-specific glycoprotein OS=Sus scrofa GN=OVGP1 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.281e-19
Identity = 71/221 (32.13%), Postives = 104/221 (47.06%), Query Frame = 3
Query:  198 DIDSTLFTHLFCAFADLNSQNFQVTVSSENQAIFSSFTRTVQQKNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYP-----DNAQMSDFGTLLTEWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINPTSAISNSLDWTNVMAYDFFYNDDRTGSRITGPPAALFSPDRSQVSGDSGIRAWIQSGLSPRK*CWGF 845
            D+D  L THL  AFA +N     V   + +++IF      ++++N  +K LLSIGG N     F  M S   +R+ FI S+I L R+  F GLD+ + YP           +F  LL E   A   EA+ + +P LLL+AAVS   +          +   LD+ NV++YD       +  ++TG  + LFS      S    +  W + G  P K   GF
Sbjct:   45 DLDPFLCTHLVFAFASMNDSQI-VAKDARDESIFYPEFNQLKERNEKLKTLLSIGGWNFGTSRFTTMLSTFTNREKFIRSAIGLLRTHGFDGLDLFFLYPGLRGSPRRDRWNFLFLLEELLLAFRREAQLTMRPRLLLSAAVSADPHVIQKAYDVRLLGRLLDFINVLSYDL----HGSWEKVTGHNSPLFSLSDDPKSSAYTMNYWRKLGAPPEKLLMGF 260          
BLAST of DY263089 vs. ExPASy Swiss-Prot
Match: CHIA_HUMAN (Acidic mammalian chitinase OS=Homo sapiens GN=CHIA PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.281e-19
Identity = 62/171 (36.26%), Postives = 83/171 (48.54%), Query Frame = 3
Query:  198 DIDSTLFTHLFCAFADLNSQNFQVTVSSENQAIFSSFTRTVQQKNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDNAQMSD-----FGTLLTEWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINPTSAISNSLDWTNVMAYD 695
            +ID  L THL  AFA    QN ++T    N          ++ KN  +K LL+IGG N     F AM S   +R++FI S I   R   F GLD DWEYP +          F  L+ E R A   EA+   KP L++TAAV+   +   +      +S  LD+ +VM YD
Sbjct:   45 NIDPCLCTHLIYAFA--GRQNNEITTIEWNDVTLYQAFNGLKNKNSQLKTLLAIGGWNFGTAPFTAMVSTPENRQTFITSVIKFLRQYEFDGLDFDWEYPGSRGSPPQDKHLFTVLVQEMREAFEQEAKQINKPRLMVTAAVAAGISNIQSGYEIPQLSQYLDYIHVMTYD 213          
The following BLAST results are available for this feature:
BLAST of DY263089 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
CHIT1_HUMAN1.475e-2633.05Chitotriosidase-1 OS=Homo sapiens GN=CHIT1 PE=1 SV... [more]
CHIT1_MOUSE4.744e-2532.13Chitotriosidase-1 OS=Mus musculus GN=Chit1 PE=1 SV... [more]
CHIA_BOVIN1.428e-2137.29Acidic mammalian chitinase OS=Bos taurus GN=CHIA P... [more]
CHIA_RAT9.226e-2131.72Acidic mammalian chitinase OS=Rattus norvegicus GN... [more]
CH3L1_RAT1.579e-2032.44Chitinase-3-like protein 1 OS=Rattus norvegicus GN... [more]
CH3L1_PONAB2.694e-2036.78Chitinase-3-like protein 1 OS=Pongo abelii GN=CHI3... [more]
CHIA_MOUSE1.746e-1935.23Acidic mammalian chitinase OS=Mus musculus GN=Chia... [more]
CH3L1_HUMAN1.746e-1935.06Chitinase-3-like protein 1 OS=Homo sapiens GN=CHI3... [more]
OVGP1_PIG2.281e-1932.13Oviduct-specific glycoprotein OS=Sus scrofa GN=OVG... [more]
CHIA_HUMAN2.281e-1936.26Acidic mammalian chitinase OS=Homo sapiens GN=CHIA... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA10DB07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263089 ID=DY263089; Name=DY263089; organism=Citrus clementina; type=EST; length=1206bp
CCGCAAACTTGTATGTTAAGTGCTTCCGAGCGCAATTAAAGAGCAGCAAT
ATTTATCAACTCTCTTTCGATATGGCACCCAAAATCCTGCCTGTTTTGCT
TTCTTTCACCCTCCTTCTCCTCCAGCTACACTCCTCTGCCGGGCAAAATG
CTGTCAAAGCAGCTTACTGGTTCTCCGGCTCCAATTTTCCCGTGGCCGAC
ATCGATTCCACCCTTTTCACTCACCTTTTCTGTGCTTTTGCTGATCTCAA
TTCTCAAAACTTCCAGGTAACCGTTTCATCCGAAAACCAAGCCATATTCT
CATCCTTCACAAGAACCGTCCAGCAGAAAAACCCTGCAGTCAAAGCCCTC
TTGTCAATCGGCGGCGGAAATGCAAGTAAAGAATCGTTTGCAGCAATGGC
CAGCCAGGCAGCTTCCCGCAAGTCATTCATCGACTCTTCTATCAACCTCG
CCAGGTCTCTAAATTTCCACGGTCTCGACATTGACTGGGAGTACCCGGAC
AACGCACAGATGTCAGACTTCGGAACCCTTCTCACTGAATGGCGTTCAGC
CGTGGCCGCCGAGGCAAGATCCTCCGGGAAGCCAGCGTTGCTCCTCACCG
CCGCGGTTTCTTACTCGGCAAACTATTTTGGCGCGATTAACCCTACTAGC
GCAATATCAAACAGCTTGGATTGGACCAACGTGATGGCTTACGACTTCTT
TTATAATGATGACCGAACCGGTTCAAGAATCACCGGACCGCCGGCTGCGT
TATTCAGTCCTGACAGGAGCCAAGTTAGTGGAGATTCAGGAATCAGAGCC
TGGATCCAGTCTGGCTTGTCTCCCAGAAAATAGTGCTGGGGTTTCCATTT
TTGGCCATTCGTTGCAGCTTGCAAATGCTAATAATCACGGCTTTTGGGGC
TCAACGAGTGGAACTGTGAATGGGTGGGGTGATGTCATATAAAGGAAATC
AGGCAGTTTTATAATGTCAACGAATGCAACGAAAGTATTCAATGCCACTG
TTTGTTTCGAATAATGCTACAAGGGGAATACTTGAAATCGAAAATGAAGA
AACCCAGAGTGTTAACACATAAGGTAAAATAGCCCAAGAACACGGAAATT
CCTGGGTTAATTTTGCTTGGAAATTTTCCAAAAAGAAAAATTGGAAAACT
TTTCTGGGAAAACTTCCCCGAAAAATGGGGGGGAAAAAAAGGGACAAAAT
TCTTTT
back to top