DY263118

Overview
NameDY263118
Unique NameDY263118
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1259
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263118 vs. ExPASy Swiss-Prot
Match: RED_RAT (Protein Red OS=Rattus norvegicus GN=Ik PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.960e-37
Identity = 83/193 (43.01%), Postives = 130/193 (67.36%), Query Frame = 3
Query:   69 YRDRAKERREDQNPDYEPTEL----GSFHAVAPPGNVDLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGK-SRTSKEDQ----QLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSN-DIPTTLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTYLR 617
            YRDRAKERR+  N DYE TEL     ++ AV P    D   A+ ++  I++SK+LGGD+EHTHLVKGLD+ALL KVR+EI  K    ++   K  + +K+D+    ++ F+T + ++VY+ + K ++  + NE+FLPGRM+++ + +  Y++ DIPTTL RSKADCP  +   T++ +  V+ ++ +I++YLR
Sbjct:   99 YRDRAKERRDGVNKDYEETELISTTANYRAVGPTAEADKSAAEKRRQLIQESKFLGGDMEHTHLVKGLDFALLQKVRAEIASKEKEEEELMEKPQKETKKDEDPENKIEFKTRLGRNVYRMLFKSKS-YERNELFLPGRMAYVVDLDDEYADTDIPTTLIRSKADCPTMEAQTTLTTNDIVISKLTQILSYLR 290          
BLAST of DY263118 vs. ExPASy Swiss-Prot
Match: RED_MOUSE (Protein Red OS=Mus musculus GN=Ik PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.960e-37
Identity = 83/193 (43.01%), Postives = 130/193 (67.36%), Query Frame = 3
Query:   69 YRDRAKERREDQNPDYEPTEL----GSFHAVAPPGNVDLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGK-SRTSKEDQ----QLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSN-DIPTTLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTYLR 617
            YRDRAKERR+  N DYE TEL     ++ AV P    D   A+ ++  I++SK+LGGD+EHTHLVKGLD+ALL KVR+EI  K    ++   K  + +K+D+    ++ F+T + ++VY+ + K ++  + NE+FLPGRM+++ + +  Y++ DIPTTL RSKADCP  +   T++ +  V+ ++ +I++YLR
Sbjct:   99 YRDRAKERRDGVNKDYEETELISTTANYRAVGPTAEADKSAAEKRRQLIQESKFLGGDMEHTHLVKGLDFALLQKVRAEIASKEKEEEELMEKPQKETKKDEDPENKIEFKTRLGRNVYRMLFKSKS-YERNELFLPGRMAYVVDLDDEYADTDIPTTLIRSKADCPTMEAQTTLTTNDIVISKLTQILSYLR 290          
BLAST of DY263118 vs. ExPASy Swiss-Prot
Match: RED_PONAB (Protein Red OS=Pongo abelii GN=IK PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 2.560e-37
Identity = 83/193 (43.01%), Postives = 129/193 (66.84%), Query Frame = 3
Query:   69 YRDRAKERREDQNPDYEPTEL----GSFHAVAPPGNVDLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGK-SRTSKEDQ----QLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSN-DIPTTLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTYLR 617
            YRDRAKERR+  N DYE TEL     ++ AV P    D   A+ ++  I++SK+LGGD+EHTHLVKGLD+ALL KVR+EI  K    ++   K  + +K+D+    ++ F+T + ++VY+ + K +   + NE+FLPGRM+++ + +  Y++ DIPTTL RSKADCP  +   T++ +  V+ ++ +I++YLR
Sbjct:   99 YRDRAKERRDGVNKDYEETELISTTANYRAVGPTAEADKSAAEKRRQLIQESKFLGGDMEHTHLVKGLDFALLQKVRAEIASKEKEEEELMEKPQKETKKDEDPENKIEFKTRLGRNVYRMLFKSK-AYERNELFLPGRMAYVVDLDDEYADTDIPTTLIRSKADCPTMEAQTTLTTNDIVISKLTQILSYLR 290          
BLAST of DY263118 vs. ExPASy Swiss-Prot
Match: RED_HUMAN (Protein Red OS=Homo sapiens GN=IK PE=1 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 5.704e-37
Identity = 83/193 (43.01%), Postives = 128/193 (66.32%), Query Frame = 3
Query:   69 YRDRAKERREDQNPDYEPTEL----GSFHAVAPPGNVDLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGK-SRTSKEDQ----QLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSN-DIPTTLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTYLR 617
            YRDRAKERR+  N DYE TEL     ++ AV P    D   A+ ++  I++SK+LGGD+EHTHLVKGLD+ALL KVR EI  K    ++   K  + +K+D+    ++ F+T + ++VY+ + K +   + NE+FLPGRM+++ + +  Y++ DIPTTL RSKADCP  +   T++ +  V+ ++ +I++YLR
Sbjct:   99 YRDRAKERRDGVNKDYEETELISTTANYRAVGPTAEADKSAAEKRRQLIQESKFLGGDMEHTHLVKGLDFALLQKVRLEIASKDKEEEELMEKPQKETKKDEDPENKIEFKTRLGRNVYRMLFKSK-AYERNELFLPGRMAYVVDLDDEYADTDIPTTLIRSKADCPTMEAQTTLTTNDIVISKLTQILSYLR 290          
The following BLAST results are available for this feature:
BLAST of DY263118 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RED_RAT1.960e-3743.01Protein Red OS=Rattus norvegicus GN=Ik PE=1 SV=1[more]
RED_MOUSE1.960e-3743.01Protein Red OS=Mus musculus GN=Ik PE=2 SV=1[more]
RED_PONAB2.560e-3743.01Protein Red OS=Pongo abelii GN=IK PE=2 SV=1[more]
RED_HUMAN5.704e-3743.01Protein Red OS=Homo sapiens GN=IK PE=1 SV=2[more]
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Properties
Property NameValue
Genbank descriptionIC0AAA10DD12RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263118 ID=DY263118; Name=DY263118; organism=Citrus clementina; type=EST; length=1259bp
AGAAATACTACAAGGAAAAAATCGCTCGACGAAAAGATGAGAAACCCGAG
GAACCGGAGCAGCCGAAATATCGGGACCGAGCTAAGGAGCGAAGAGAGGA
TCAGAACCCAGATTATGAACCTACAGAATTGGGCTCATTTCACGCCGTCG
CTCCTCCTGGCAACGTTGATCTCCGGTTGGCTGATGCACAAAAGCTTTCC
ATCGAGAAGAGCAAGTACCTTGGAGGCGACGTGGAGCACACTCATTTGGT
CAAGGGGTTGGATTATGCGCTGCTTAACAAAGTGAGAAGTGAGATTGACA
AGAAACCTGATGCTGGGGATGATACTGATGGAAAGTCTAGAACTTCGAAG
GAAGATCAACAATTGTCATTTCGCACTGCAATGGCTAAGTCGGTGTATCA
ATGGATAGTCAAGCCTCAAACTGTTATGAAGACAAATGAGATGTTCCTCC
CAGGTCGAATGTCATTTATTTTTAACACAGAGGGTGGATACTCTAATGAC
ATACCAACCACCTTGCATAGAAGTAAAGCTGATTGTCCTGTTCCAGATGA
AATGGTTACTGTCAGCGTTGATGGTTCTGTGCTAGACCGAATTGCAAAAA
TTATGACATATCTACGCCTTGGATCATCTGGGAAGGTTCTCAAGAAGAAA
AAGAAGGAAAGAGACGCGAAAGTTACAGGAAAGACTTCAACTGTAGTTAA
CAAATATGATGAAGAGGATAAGCCATCAAAAGCTAATAGTGGAATACCTA
ATGGTAAAACTGAAAAAGAGATCCTGCCACCACCTCCGCCACCTCCCAAG
AAAAATCATGTTGATTCGAGAGAGAAACAAGGCCCAATTGTTGCTAGATC
AGAAGAAGATGATATATTTGTTGGGGCAGGCACTGACTATACAGTTCCCT
GGTAAAGACATGAACCAAAGCCCTGTTTCTGAGGATATGGAGGAGTCTCC
TCGAAATAAGGAAAAGGGTTCCTACTTCTCTGAATCTGGTGTATGGTCCA
TTCCCTCCTGCCGAGCCCCCTCTGGGCCTGGCAAGATACGAATGGGATAT
GAAGCCCTGGCAGCCCAAGCCTTGGGGTGGGGGGCTTCCCGGGGGAAAGG
GGCAGGGACTTACAAAAAGGGGTAACAAATTGGGCTTTACCCCGAAAAAT
ACCCCCCCCCCCGGGAATTGGCCCAAACTTTAGAAAAATCGAAGGGGGGG
GTTTAAAAATTGGCCCCAAAAAATTCCCCCCCCTTTCCGGGAACCCACAG
AAAAAAGAA
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