DY263122

Overview
NameDY263122
Unique NameDY263122
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1332
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263122 vs. ExPASy Swiss-Prot
Match: PEL4_ARATH (Probable pectate lyase 4 OS=Arabidopsis thaliana GN=At1g30350 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.123e-38
Identity = 95/225 (42.22%), Postives = 135/225 (60.00%), Query Frame = 2
Query:  296 RALAGQAEGFGRLAIGGLHGPLYHVTTLADD----GPGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLT-GKGLRLKECEHVIICNLEFEGGK----GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTI-HHCFFDGTRQRHPRVRYAKVHLYNNYTRKLGIYAVCASVD 940
            +ALA  A G+G+ AIGG +GP+Y VT  +D+     PG+LR      +PLWI F     I L+S L ++SYKTIDGRG +V++  G  LR+++ +HVII  +     K    G D D I++  +S H+WID C L    DGLID+   ST +T+S  +F+ HDK ML+G D S++ D+ +RVTI  + F  G  +R PRVR    H+ NN   K  +YA+  S +
Sbjct:   53 QALAHCAVGYGKAAIGGKNGPIYVVTNPSDNPTRPSPGTLRYAVSQPKPLWITFARDMVIVLKSQLMINSYKTIDGRGAKVEIANGPCLRIRQVKHVIIHGISIHDCKADPNGMDGDGIRVF-QSTHVWIDHCFLSRCHDGLIDVIVSSTAVTISNNYFTQHDKVMLLGHDDSYMGDKDMRVTIAFNTFGPGLIERMPRVRRGYAHVANNRYEKWQMYAIGGSAN 276          
BLAST of DY263122 vs. ExPASy Swiss-Prot
Match: PEL2_ARATH (Putative pectate lyase 2 OS=Arabidopsis thaliana GN=At1g11920 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 8.898e-36
Identity = 96/239 (40.17%), Postives = 129/239 (53.97%), Query Frame = 2
Query:  296 RALAGQAEGFGRLAIGGLHGPLYHVTTLADDG----PGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLT-GKGLRLKECEHVIICNLEFE------------------GGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTI-HHCFFDGTRQRHPRVRYAKVHLYNNYTRKLGIYAVCASVD 940
            RALA  A GFG+ A+GG +G +Y VT  +DD     PG+LR      +PLWI F     I LR+ L ++SYKTIDGRG +V++  G  + ++   HVII  +                       KG D DAI I   S HIWID C      DGLID+   ST +T+S  +F+ HDK ML+G + ++V D+ +RVTI  + F  G  +R PRVR    H+ NN   K  +YA+  S D
Sbjct:   54 RALADCAVGFGKSAVGGKYGSIYVVTNPSDDPENPRPGTLRYAVIQSKPLWITFARDMVIVLRNELIMNSYKTIDGRGAKVEIAYGPCITIQHVSHVIIHGISIHDCKPGKSGRVRSSPTHVGSRKGSDGDAIAIFDSS-HIWIDHCFFSRCQDGLIDVLHASTAVTISNNYFTQHDKVMLLGHNDNNVEDKIMRVTIAFNHFGPGLIERMPRVRRGYAHVANNRYEKWQMYAIGGSAD 291          
BLAST of DY263122 vs. ExPASy Swiss-Prot
Match: PEL21_ARATH (Putative pectate lyase 21 OS=Arabidopsis thaliana GN=At5g55720 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.678e-34
Identity = 101/264 (38.26%), Postives = 133/264 (50.38%), Query Frame = 2
Query:  302 LAGQAEGFGRLAIGGLHGPLYHVTTLADDGP-----GSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLT-GKGLRLKECEHVIICNLEFEG------------GKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFF-DGTRQRHPRVRYAKVHLYNNYTRKLGIYAVCASVDHRYTPNVIYMKQDRGDGNXVSYKEASNREEAD 1036
            LA  A GFGR +IGG  G  Y VT   DD P     G+LR      +PLWI+F+    I L+  L V+SYKTIDGRG  V++  G  L L +  ++II NL                G   D D I I  +S+ IWID C+L    DGLID    STDIT+S  +  +H++ ML+G    +  DR +RVTI   +F +G  QR PR R+   H+ NN  R   +YA+  S +    P +          N    KE + RE AD
Sbjct:   68 LADCAVGFGRDSIGGRAGEFYTVTDSGDDNPLNPTPGTLRYAATQDQPLWIIFDRDMVIQLKQDLQVASYKTIDGRGNNVQIAYGPCLTLYKVSNIIINNLYIHDCVPVKRNALSSLGGYSDGDGISIF-ESRDIWIDHCTLEKCYDGLIDAVNGSTDITISNSYMLNHNEVMLLGHSDEYSGDRDMRVTIAFNYFGEGLVQRMPRCRHGYFHIVNNIYRDWKMYAIGGSAN----PTIFSQGNVFIASNNQFTKEVTKRESAD 326          
BLAST of DY263122 vs. ExPASy Swiss-Prot
Match: PEL13_ARATH (Probable pectate lyase 13 OS=Arabidopsis thaliana GN=PMR6 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 4.882e-34
Identity = 92/227 (40.53%), Postives = 126/227 (55.51%), Query Frame = 2
Query:  302 LAGQAEGFGRLAIGGLHGPLYHVTTLADDGP-----GSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKG-LRLKECEHVIICNLE---------FEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTI-HHCFFDGTRQRHPRVRYAKVHLYNNYTRKLGIYAVCAS 934
            LA  + GFG   +GG +G +Y VT  +D+ P     G+LR G   +EPLWIVF  +  I L+  L ++SYKT+DGRG  V +TG G L L+  +H+II NL          FE     D D I I    K IW+D CS+    DGLID    ST IT+S  +F+ HD+ ML+G D ++  D  ++VTI  + F  G  QR PR R   +H+ NN   +  +YA+  S
Sbjct:   99 LADCSIGFGHGTLGGKNGKIYVVTDSSDNNPTNPTPGTLRYGVIQEEPLWIVFSSNMLIRLKQELIINSYKTLDGRGSAVHITGNGCLTLQYVQHIIIHNLHIYDCKPSAGFEKRGRSDGDGISIFGSQK-IWVDHCSMSHCTDGLIDAVMGSTAITISNNYFTHHDEVMLLGHDDNYAPDTGMQVTIAFNHFGQGLVQRMPRCRRGYIHVVNNDFTEWKMYAIGGS 324          
BLAST of DY263122 vs. ExPASy Swiss-Prot
Match: MPA12_AMBAR (Pollen allergen Amb a 1.2 OS=Ambrosia artemisiifolia PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.088e-33
Identity = 91/237 (38.40%), Postives = 124/237 (52.32%), Query Frame = 2
Query:  296 RALAGQAEGFGRLAIGGLHGPLYHVTTLADDG-----PGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGK-----------GP-------DVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTI-HHCFFDGTRQRHPRVRYAKVHLYNNYTRKLGIYAVCAS 934
            +ALA  A+GF +   GG HG +Y VT+  DD       G+LR       PLWI+F+ +  IHL   L V+S KTIDGRG +V +   GL L   +++II N+     K           GP       D DAI +   S+ IWID CSL    DGL+DIT  S+ +TVS C F+ H   +L+GAD +H  D+ +  T+  + F D   QR PR R+    + NN   + G YA+  S
Sbjct:   67 QALADCAQGFAKGTYGGKHGDVYTVTSDKDDDVANPKEGTLRFAAAQNRPLWIIFKRNMVIHLNQELVVNSDKTIDGRGVKVNIVNAGLTLMNVKNIIIHNINIHDIKVCPGGMIKSNDGPPILRQQSDGDAINVAGSSQ-IWIDHCSLSKASDGLLDITLGSSHVTVSNCKFTQHQFVLLLGADDTHYQDKGMLATVAFNMFTDHVDQRMPRCRFGFFQVVNNNYDRWGTYAIGGS 302          
BLAST of DY263122 vs. ExPASy Swiss-Prot
Match: PEL11_ARATH (Putative pectate lyase 11 OS=Arabidopsis thaliana GN=At3g27400 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.423e-33
Identity = 103/283 (36.40%), Postives = 145/283 (51.24%), Query Frame = 2
Query:  302 LAGQAEGFGRLAIGGLHGPLYHVTTLADDGP-----GSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLT-GKGLRLKECEHVIICNLEFEGGK---------GP---------DVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTI-HHCFFDGTRQRHPRVRYAKVHLYNNYTRKLGIYAVCASVD-------HRY-TPNVIYMKQ--DRGDGNXVSYKEASNREEADRVL 1045
            LA  A GFG+ AIGG  G +Y VT  A+D P     G+LR     +EPLWI+F+    I L+  L ++S+KTIDGRG  V +T G  L++    ++II  +     K         GP         D DA+ I    KH+WID CSL + DDGLID    ST IT+S  H + HDK ML+G   S+  D+ ++VTI  + F +G  QR PR R+   H+ NN      +YA+  S         +R+  PN  + K+     D     +++ + R E D +L
Sbjct:   80 LADCAIGFGKNAIGGRKGRIYVVTDPANDDPVNPRPGTLRYAVTQEEPLWIIFKRDMVIRLKKELIITSFKTIDGRGSSVHITDGPCLKIHYATNIIIHGINIHDCKPGSGGMIKDGPHHTGWWMQSDGDAVAIFG-GKHVWIDHCSLSNCDDGLIDAIHGSTAITISNNHMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTIYSQGNRFLAPNTRFNKEVTKHEDAPESKWRDWNWRSEGDMLL 361          
BLAST of DY263122 vs. ExPASy Swiss-Prot
Match: MPA13_AMBAR (Pollen allergen Amb a 1.3 OS=Ambrosia artemisiifolia PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 5.968e-32
Identity = 88/237 (37.13%), Postives = 123/237 (51.90%), Query Frame = 2
Query:  296 RALAGQAEGFGRLAIGGLHGPLYHVTTLADDG-----PGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGK-----------GP-------DVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTI-HHCFFDGTRQRHPRVRYAKVHLYNNYTRKLGIYAVCAS 934
            +ALA  A+GF +   GG  G +Y VT+  DD       G+LR       PLWI+F+    I+L   L V+S KTIDGRG +V++   GL L   +++II N+     K           GP       D D I +   S+ IWID CSL    DGL+D+T  ST +T+S C F+   K +L+GAD +HV D+ +  T+  + F D   QR PR R+    + NN   + G YA+  S
Sbjct:   66 QALADCAQGFAKGTYGGKWGDVYTVTSNLDDDVANPKEGTLRFAAAQNRPLWIIFKNDMVINLNQELVVNSDKTIDGRGVKVEIINGGLTLMNVKNIIIHNINIHDVKVLPGGMIKSNDGPPILRQASDGDTINVAGSSQ-IWIDHCSLSKSFDGLVDVTLGSTHVTISNCKFTQQSKAILLGADDTHVQDKGMLATVAFNMFTDNVDQRMPRCRFGFFQVVNNNYDRWGTYAIGGS 301          
BLAST of DY263122 vs. ExPASy Swiss-Prot
Match: MPAA2_AMBAR (Pollen allergen Amb a 2 OS=Ambrosia artemisiifolia PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 7.795e-32
Identity = 87/237 (36.71%), Postives = 127/237 (53.59%), Query Frame = 2
Query:  296 RALAGQAEGFGRLAIGGLHGPLYHVTTLADDG-----PGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFE------GGK-----GP-------DVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGT-RQRHPRVRYAKVHLYNNYTRKLGIYAVCAS 934
            +AL   A+GFG+   GG  G +Y VT+  DD       G+LR G     PLWI+F+    I+L+  + V+S KTIDGRG +V+L   G+ L   ++VII N++        GG+     GP       D DAI +   S  IWID C+L    DGL+D+   ST +T+S C F+ H+K +L+GA  +H  D  + VT+ +  F  T  +R PR R+    + NN+  +   YA+  S
Sbjct:   66 QALGNCAQGFGKATHGGKWGDIYMVTSDQDDDVVNPKEGTLRFGATQDRPLWIIFQRDMIIYLQQEMVVTSDKTIDGRGAKVELVYGGITLMNVKNVIIHNIDIHDVRVLPGGRIKSNGGPAIPRHQSDGDAIHVTGSSD-IWIDHCTLSKSFDGLVDVNWGSTGVTISNCKFTHHEKAVLLGASDTHFQDLKMHVTLAYNIFTNTVHERMPRCRFGFFQIVNNFYDRWDKYAIGGS 301          
BLAST of DY263122 vs. ExPASy Swiss-Prot
Match: PEL56_SOLLC (Probable pectate lyase P56 OS=Solanum lycopersicum GN=LAT56 PE=2 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 1.330e-31
Identity = 98/237 (41.35%), Postives = 124/237 (52.32%), Query Frame = 2
Query:  302 LAGQAEGFGRLAIGGLHGPLYHVTTLADDG-----PGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLT-GKGLRLKECEHVIICNLEFE-----------------GGKGPDV-DAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTR--QRHPRVRYAKVHLYNNYTRKLGIYAVCAS 934
            +A  A GFG  A+GG +GP Y VT  +DD      PG+LR G   K PLWI F  S  I L   L VSS KTIDGRG+ V +  G G++++   +VII NL                    G +G D  DAI I   S  IWID  S+    DGLID    ST+IT+S CHF+ H+K ML GA+     DR +++T+ +  F G R  QR PR R+   HL NN       YA+  S
Sbjct:   66 MADCALGFGINAMGGKYGPYYIVTDNSDDDVVDPKPGTLRFGVIQKGPLWITFARSMRIRLTRELIVSSNKTIDGRGKYVHIANGAGIKIQSASNVIISNLRIHNIVPTAGGLLRESDDHLGLRGADEGDAISIF-NSHDIWIDHISMSRATDGLIDAVAGSTNITISNCHFTDHEKVMLFGANDHAEEDRGMKITLAYNHF-GKRLDQRMPRCRFGFFHLVNNDYTHWERYAIGGS 300          
BLAST of DY263122 vs. ExPASy Swiss-Prot
Match: PEL_TOBAC (Pectate lyase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.736e-31
Identity = 95/237 (40.08%), Postives = 125/237 (52.74%), Query Frame = 2
Query:  302 LAGQAEGFGRLAIGGLHGPLYHVTTLADDG-----PGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKL-TGKGLRLKECEHVIICNLEFE-----------------GGKGPDV-DAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTR--QRHPRVRYAKVHLYNNYTRKLGIYAVCAS 934
            +A  A GFG  AIGG  G +Y VT  +DD      PG+LR G   KEPLWI+F  +  I L   L V+S KTIDGRG  V +  G G++++   ++II NL                    G +G D  D I I   S  IWID  S+    DGLID    ST+IT+S CHF+ H+K ML GA+  +V D+ +++T+ +  F G R  QR PR R+   HL NN       YA+  S
Sbjct:   65 MADCALGFGSNAIGGKLGRIYVVTDNSDDDVVDPKPGTLRYGVIQKEPLWIIFGKNMKIKLSRELIVTSNKTIDGRGFNVHIQNGAGIKIQSASNIIISNLRIHNIVPTPGGLLRESEDHVGLRGSDEGDGISIF-SSHDIWIDHISMSRATDGLIDAVAASTNITISNCHFTDHEKVMLFGANDHYVLDKDMKITLAYNHF-GKRLDQRMPRCRFGFFHLVNNDYTHWERYAIGGS 299          
The following BLAST results are available for this feature:
BLAST of DY263122 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
PEL4_ARATH1.123e-3842.22Probable pectate lyase 4 OS=Arabidopsis thaliana G... [more]
PEL2_ARATH8.898e-3640.17Putative pectate lyase 2 OS=Arabidopsis thaliana G... [more]
PEL21_ARATH1.678e-3438.26Putative pectate lyase 21 OS=Arabidopsis thaliana ... [more]
PEL13_ARATH4.882e-3440.53Probable pectate lyase 13 OS=Arabidopsis thaliana ... [more]
MPA12_AMBAR1.088e-3338.40Pollen allergen Amb a 1.2 OS=Ambrosia artemisiifol... [more]
PEL11_ARATH2.423e-3336.40Putative pectate lyase 11 OS=Arabidopsis thaliana ... [more]
MPA13_AMBAR5.968e-3237.13Pollen allergen Amb a 1.3 OS=Ambrosia artemisiifol... [more]
MPAA2_AMBAR7.795e-3236.71Pollen allergen Amb a 2 OS=Ambrosia artemisiifolia... [more]
PEL56_SOLLC1.330e-3141.35Probable pectate lyase P56 OS=Solanum lycopersicum... [more]
PEL_TOBAC1.736e-3140.08Pectate lyase OS=Nicotiana tabacum PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10DE04RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263122 ID=DY263122; Name=DY263122; organism=Citrus clementina; type=EST; length=1332bp
CGTTTTTTGAACGCTTCAAATGGAACAGAGAAACAACTGTAACGAACGTT
GATTAAATTTAGCTCGAAGCTATCGTTTCAGTAACTCTCATCCATTAATA
TCAATGGGAAACTCACACGGGCATCATCATCATCACCGTAACGAAGCTAA
CAGTTACTTCCCACACCAAACGCCTACTCCTACCCCTCCGCCCTTTAAAT
TTGGCCCGTCTGATCATCATCAACATCAACCTGCAGCACAATTTCAGAAC
AACTCGACGATGTCATTGCCTTACGCTCACGTTGATTGCAGCTTACGTGC
TCTCGCCGGCCAGGCCGAAGGGTTCGGTCGCCTCGCCATTGGCGGTCTCC
ACGGACCCCTCTACCACGTCACCACTTTAGCTGATGACGGGCCAGGATCA
CTTCGAGAAGGATGCCGCATGAAAGAACCTCTTTGGATTGTCTTTGAAGT
GTCAGGCACCATTCATCTCCGCTCTCACTTGAGTGTCTCATCTTACAAAA
CCATAGATGGCCGAGGACAAAGGGTGAAACTTACAGGAAAGGGTTTGAGG
CTGAAGGAATGCGAACATGTTATAATATGCAATCTAGAGTTTGAAGGTGG
TAAAGGACCTGATGTTGATGCCATTCAAATAAAACCTAAGTCAAAACACA
TATGGATAGACCGTTGTAGTCTCCGTGATTATGATGATGGGCTGATAGAT
ATCACCAGAGAAAGCACAGATATTACAGTTTCTAGGTGTCACTTTTCATC
ACATGACAAGACCATGCTCATTGGAGCAGATCCCTCTCATGTTGCTGATA
GATGTATTCGAGTGACCATTCATCATTGTTTTTTTGATGGGACTCGACAA
CGACATCCACGTGTTAGATATGCTAAAGTACATCTGTATAACAATTACAC
CAGAAAATTGGGGATTTATGCTGTTTGTGCCAGTGTTGATCACAGATATA
CTCCCAATGTAATATATATGAAGCAAGACAGAGGAGATGGCAATCANGTA
TCCTACAAAGAAGCATCAAACAGGGAGGAGGCAGATCGGGTGCTAAAGTC
TGGAGGGGAATTTGTCATACTGGAACCCAGCTGGGTTGAAGACGGAAGCG
GGGGAAAAACCAGGTTTCCCCCCAGGAAAAAAACCCCATTTGGAAGGGTG
CTGGTCCTTACCAAAAATTCAAAAAGGGTTTTCTCCCTTTTAAAGGGAGG
GGCGAAAAATTTCCCCCCCCACAAAAAAAAAACCAAAAAACTGCGCCAAA
AAAAACCCAAAAAAAAAAATTGTTTTTTAAATTTCCAAAAAATTATGCTT
TTTAAACAGGGGTGTTAATATATTTTTTCTCC
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