DY263125 | Citrus Genome Database

Overview


Name	DY263125
Unique Name	DY263125
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	1337

Libraries


Library Name	Type
CitNFL	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

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BLAST of DY263125 vs. ExPASy Swiss-Prot
Match: TBA1_ORYSJ (Tubulin alpha-1 chain OS=Oryza sativa subsp. japonica GN=TUBA1 PE=1 SV=1)

HSP 1 Score: 502.286 bits (1292), Expect = 2.700e-141
Identity = 257/331 (77.64%), Postives = 267/331 (80.66%), Query Frame = 2

Query:  128 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQNNLVPYPRIHFMLSSYAPVISAEKATMNSFQFPRSQMAFFEPSSMMAQM*PQAREIHGLAA*C---YGGICFPQE 1111
            MREIISIHIGQAGIQVGN+CWELYCLEHGI PDG MPSD T+GVAHDAFNTFFSET AG+HVPRA+FVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKL+DNCTGLQGFLVFNAV                 VDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNR             RFDGAINVD+TEFQ NLVPYPRIHFMLSSYAPVISAEKA       P    A FEPSSMMA+  P+    HG    C   Y G   P++
Sbjct:    1 MREIISIHIGQAGIQVGNACWELYCLEHGIEPDGTMPSDTTVGVAHDAFNTFFSETGAGKHVPRAIFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTSLRFDGAINVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPR----HGKYMACCLMYRGDVVPKD 327

[Close]

BLAST of DY263125 vs. ExPASy Swiss-Prot
Match: TBA3_ARATH (Tubulin alpha-3/alpha-5 chain OS=Arabidopsis thaliana GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 501.901 bits (1291), Expect = 3.527e-141
Identity = 258/331 (77.95%), Postives = 267/331 (80.66%), Query Frame = 2

Query:  128 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQNNLVPYPRIHFMLSSYAPVISAEKATMNSFQFPRSQMAFFEPSSMMAQM*PQAREIHGLAA*C---YGGICFPQE 1111
            MREIISIHIGQAGIQVGNSCWELYCLEHGI PDGMMPSD T+GVAHDAFNTFFSET AG+HVPRAVFVDLEPTVIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKL+DNCTGLQGFLVFNAV                 VDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNR             RFDGAINVDITEFQ NLVPYPRIHFMLSSYAPVISA KA       P    A FEP+SMMA+  P+    HG    C   Y G   P++
Sbjct:    1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPASMMAKCDPR----HGKYMACCLMYRGDVVPKD 327

[Close]

BLAST of DY263125 vs. ExPASy Swiss-Prot
Match: TBA6_MAIZE (Tubulin alpha-6 chain OS=Zea mays GN=TUBA6 PE=2 SV=1)

HSP 1 Score: 499.59 bits (1285), Expect = 1.750e-140
Identity = 255/331 (77.04%), Postives = 267/331 (80.66%), Query Frame = 2

Query:  128 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQNNLVPYPRIHFMLSSYAPVISAEKATMNSFQFPRSQMAFFEPSSMMAQM*PQAREIHGLAA*C---YGGICFPQE 1111
            MREIISIHIGQAGIQVGN+CWELYCLEHGI PDG MPSD ++GVAHDAFNTFFSET +G+HVPRA+FVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKL+DNCTGLQGFLVFNAV                 VDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNR             RFDGAINVD+TEFQ NLVPYPRIHFMLSSYAPVISAEKA       P    A FEPSSMMA+  P+    HG    C   Y G   P++
Sbjct:    1 MREIISIHIGQAGIQVGNACWELYCLEHGIEPDGTMPSDTSVGVAHDAFNTFFSETGSGKHVPRAIFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTSLRFDGAINVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPR----HGKYMACCLMYRGDVVPKD 327

[Close]

BLAST of DY263125 vs. ExPASy Swiss-Prot
Match: TBA3_ELEIN (Tubulin alpha-3 chain OS=Eleusine indica GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 499.59 bits (1285), Expect = 1.750e-140
Identity = 255/331 (77.04%), Postives = 267/331 (80.66%), Query Frame = 2

Query:  128 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQNNLVPYPRIHFMLSSYAPVISAEKATMNSFQFPRSQMAFFEPSSMMAQM*PQAREIHGLAA*C---YGGICFPQE 1111
            MREIISIHIGQAGIQVGN+CWELYCLEHGI PDG MPSD ++GVAHDAFNTFFSET +G+HVPRA+FVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKL+DNCTGLQGFLVFNAV                 VDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNR             RFDGAINVD+TEFQ NLVPYPRIHFMLSSYAPVISAEKA       P    A FEPSSMMA+  P+    HG    C   Y G   P++
Sbjct:    1 MREIISIHIGQAGIQVGNACWELYCLEHGIEPDGTMPSDTSVGVAHDAFNTFFSETGSGKHVPRAIFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTSLRFDGAINVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPR----HGKYMACCLMYRGDVVPKD 327

[Close]

BLAST of DY263125 vs. ExPASy Swiss-Prot
Match: TBA1_HORVU (Tubulin alpha-1 chain OS=Hordeum vulgare GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 498.434 bits (1282), Expect = 3.899e-140
Identity = 255/331 (77.04%), Postives = 267/331 (80.66%), Query Frame = 2

Query:  128 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQNNLVPYPRIHFMLSSYAPVISAEKATMNSFQFPRSQMAFFEPSSMMAQM*PQAREIHGLAA*C---YGGICFPQE 1111
            MREIISIHIGQAGIQVGN+CWELYCLEHGI+ DG MPSD T+GVAHDAFNTFFSET AG+HVPRA+FVDLEPTVIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKL+DNCTGLQGFLVFNAV                 VDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNR             RFDGAINVD+TEFQ NLVPYPRIHFMLSSYAPVISAEKA       P    A FEPSSMMA+  P+    HG    C   Y G   P++
Sbjct:    1 MREIISIHIGQAGIQVGNACWELYCLEHGINQDGTMPSDTTVGVAHDAFNTFFSETGAGKHVPRAIFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTSLRFDGAINVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPR----HGKYMACCLMYRGDVVPKD 327

[Close]

BLAST of DY263125 vs. ExPASy Swiss-Prot
Match: TBA5_MAIZE (Tubulin alpha-5 chain OS=Zea mays GN=TUBA5 PE=2 SV=1)

HSP 1 Score: 496.508 bits (1277), Expect = 1.482e-139
Identity = 254/331 (76.74%), Postives = 267/331 (80.66%), Query Frame = 2

Query:  128 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQNNLVPYPRIHFMLSSYAPVISAEKATMNSFQFPRSQMAFFEPSSMMAQM*PQAREIHGLAA*C---YGGICFPQE 1111
            MREIISIHIGQAGIQVGN+CWELYCLEHGI  DG MPSD+++GVAHDAFNTFFSET +G+HVPRA+FVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKL+DNCTGLQGFLVFNAV                 VDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNR             RFDGAINVD+TEFQ NLVPYPRIHFMLSSYAPVISAEKA       P    A FEPSSMMA+  P+    HG    C   Y G   P++
Sbjct:    1 MREIISIHIGQAGIQVGNACWELYCLEHGIEHDGTMPSDSSVGVAHDAFNTFFSETGSGKHVPRAIFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTSLRFDGAINVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPR----HGKYMACCLMYRGDVVPKD 327

[Close]

BLAST of DY263125 vs. ExPASy Swiss-Prot
Match: TBA_AVESA (Tubulin alpha chain OS=Avena sativa GN=TUBA PE=2 SV=1)

HSP 1 Score: 493.812 bits (1270), Expect = 9.604e-139
Identity = 253/331 (76.44%), Postives = 265/331 (80.06%), Query Frame = 2

Query:  128 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQNNLVPYPRIHFMLSSYAPVISAEKATMNSFQFPRSQMAFFEPSSMMAQM*PQAREIHGLAA*C---YGGICFPQE 1111
            MREIISIHIGQAGIQVGN+CWELYCLEHGI  DG MPSD T+GVAHDAFNTFFSET AG+HVPRA+FVDLEPTVIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCL RVR+L+DNCTGLQGFLVFNAV                 VDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNR             RFDGAINVD+TEFQ NLVPYPRIHFMLSSYAPVISAEKA       P    A FEPSSMMA+  P+    HG    C   Y G   P++
Sbjct:    1 MREIISIHIGQAGIQVGNACWELYCLEHGIQQDGTMPSDTTVGVAHDAFNTFFSETGAGKHVPRAIFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLGRVRQLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTSLRFDGAINVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPR----HGKYMACCLMYRGDVVPKD 327

[Close]

BLAST of DY263125 vs. ExPASy Swiss-Prot
Match: TBA1_ARATH (Tubulin alpha-1 chain OS=Arabidopsis thaliana GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 485.723 bits (1249), Expect = 2.616e-136
Identity = 246/331 (74.32%), Postives = 265/331 (80.06%), Query Frame = 2

Query:  128 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQNNLVPYPRIHFMLSSYAPVISAEKATMNSFQFPRSQMAFFEPSSMMAQM*PQAREIHGLAA*C---YGGICFPQE 1111
            MREIISIHIGQAGIQVGNSCWELYCLEHGI PDG MPSD+T+G  HDAFNTFFSETS+G+HVPRAVF+DLEPTVIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYTVG+EIVD CL+R+RKL+DNCTGLQGFLVFNAV                 VD+GKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDV VLLDNEAIYDICRRSLDIERPTY+NLNR             RFDGAINVDITEFQ NLVPYPRIHFMLSSYAPVIS+ KA    F  P    + FEPS+MMA+  P+    HG    C   Y G   P++
Sbjct:    1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDSTVGACHDAFNTFFSETSSGQHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDTCLERLRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDFGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVVVLLDNEAIYDICRRSLDIERPTYSNLNRLISQTISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISSAKAYHEQFSVPEITTSVFEPSNMMAKCDPR----HGKYMACCLMYRGDVVPKD 327

[Close]

BLAST of DY263125 vs. ExPASy Swiss-Prot
Match: TBA4_GOSHI (Tubulin alpha-4 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 484.567 bits (1246), Expect = 5.827e-136
Identity = 246/331 (74.32%), Postives = 262/331 (79.15%), Query Frame = 2

Query:  128 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQNNLVPYPRIHFMLSSYAPVISAEKATMNSFQFPRSQMAFFEPSSMMAQM*PQAREIHGLAA*C---YGGICFPQE 1111
            MRE ISIHIGQAGIQVGN+CWELYCLEHGI PDG MPSD T+G   DAFNTFFSET AG+HVPRAVFVDLEPTVIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+GKEIVDLCLDR+RKL+DNCTGLQGFLVFNAV                 VDYGKKSKLGFT+YPSPQVST+VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNR             RFDGA+NVD+TEFQ NLVPYPRIHFMLSSYAPVISAEKA            + FEPSSMMA+  P+    HG    C   Y G   P++
Sbjct:    1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPR----HGKYMACCLMYRGDVVPKD 327

[Close]

BLAST of DY263125 vs. ExPASy Swiss-Prot
Match: TBA2_GOSHI (Tubulin alpha-2 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 484.567 bits (1246), Expect = 5.827e-136
Identity = 246/331 (74.32%), Postives = 262/331 (79.15%), Query Frame = 2

Query:  128 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDITEFQNNLVPYPRIHFMLSSYAPVISAEKATMNSFQFPRSQMAFFEPSSMMAQM*PQAREIHGLAA*C---YGGICFPQE 1111
            MRE ISIHIGQAGIQVGN+CWELYCLEHGI PDG MPSD T+G   DAFNTFFSET AG+HVPRAVFVDLEPTVIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+GKEIVDLCLDR+RKL+DNCTGLQGFLVFNAV                 VDYGKKSKLGFT+YPSPQVST+VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNR             RFDGA+NVD+TEFQ NLVPYPRIHFMLSSYAPVISAEKA            + FEPSSMMA+  P+    HG    C   Y G   P++
Sbjct:    1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPR----HGKYMACCLMYRGDVVPKD 327

The following BLAST results are available for this feature:

BLAST of DY263125 vs. ExPASy Swiss-Prot

BLAST of DY263125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 424


Match Name	E-value	Identity	Description
TBA1_ORYSJ	2.700e-141	77.64	Tubulin alpha-1 chain OS=Oryza sativa subsp. japon...	[more]
TBA3_ARATH	3.527e-141	77.95	Tubulin alpha-3/alpha-5 chain OS=Arabidopsis thali...	[more]
TBA6_MAIZE	1.750e-140	77.04	Tubulin alpha-6 chain OS=Zea mays GN=TUBA6 PE=2 SV...	[more]
TBA3_ELEIN	1.750e-140	77.04	Tubulin alpha-3 chain OS=Eleusine indica GN=TUBA3 ...	[more]
TBA1_HORVU	3.899e-140	77.04	Tubulin alpha-1 chain OS=Hordeum vulgare GN=TUBA1 ...	[more]
TBA5_MAIZE	1.482e-139	76.74	Tubulin alpha-5 chain OS=Zea mays GN=TUBA5 PE=2 SV...	[more]
TBA_AVESA	9.604e-139	76.44	Tubulin alpha chain OS=Avena sativa GN=TUBA PE=2 S...	[more]
TBA1_ARATH	2.616e-136	74.32	Tubulin alpha-1 chain OS=Arabidopsis thaliana GN=T...	[more]
TBA4_GOSHI	5.827e-136	74.32	Tubulin alpha-4 chain OS=Gossypium hirsutum PE=2 S...	[more]
TBA2_GOSHI	5.827e-136	74.32	Tubulin alpha-2 chain OS=Gossypium hirsutum PE=2 S...	[more]

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Properties


Property Name	Value
Genbank description	IC0AAA10DE07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DY263125 ID=DY263125; Name=DY263125; organism=Citrus clementina; type=EST; length=1337bp
CAAGATCATTTTCGCCGGTTTTTGAGATCGAACAACGTGGTTTAGCTTTA
AAGTGTAGGGGAACAGAAAGCAAAAGGGAGGAAATTAGGGTTCTTGGGCT
TGTGGGTATTTTGAAAAAGGCAAAGAAATGAGAGAAATTATAAGTATACA
CATTGGGCAAGCTGGGATTCAAGTGGGGAATTCATGCTGGGAGCTTTATT
GCCTAGAACATGGCATTCATCCTGATGGCATGATGCCCAGTGACAATACA
ATAGGTGTAGCCCATGATGCCTTCAATACATTCTTCAGTGAAACCAGTGC
TGGCAGGCATGTGCCCAGAGCTGTGTTTGTTGATCTTGAACCAACTGTCA
TTGATGAAGTTAGAACGGGTAGCTACCGCCAGCTTTTCCACCCAGAGCAG
CTTATCTCTGGCAAGGAAGATGCTGCTAACAATTTTGCAAGAGGGCATTA
TACTGTTGGGAAGGAAATTGTGGATCTTTGCCTTGATCGTGTTCGAAAGT
TATCTGATAACTGCACTGGGTTGCAAGGGTTTTTGGTGTTCAATGCTGTT
GGGGGTGGTACTGGTTCCGGTCTGGGGTCGTTGTTACTGGAACGCCTATC
TGTAGATTATGGAAAGAAGTCAAAGCTTGGCTTCACTATCTACCCTTCTC
CTCAGGTATCAACAGCAGTTGTGGAGCCTTATAACAGTGTTCTGTCTACT
CATTCCCTTCTTGAACACACAGATGTTGCTGTGCTATTGGACAATGAAGC
TATTTATGACATCTGCAGGAGATCCCTAGATATTGAGAGGCCAACTTACA
CTAATTTGAATCGATTGATATCTCAAATCATATCATCTTTGACAACTTCA
TTGAGGTTTGATGGAGCTATTAATGTTGATATTACAGAGTTCCAGAACAA
CCTTGTACCGTATCCTCGTATCCATTTCATGCTTTCATCATATGCCCCTG
TCATCTCTGCTGAAAAAGCTACCATGAACAGCTTTCAGTTTCCGAGATCA
CAAATGGCATTCTTTGAGCCCTCAAGCATGATGGCCCAAATGTGACCCCA
GGCCCGGGAAATACATGGGCTTGCTGCTTGATGTTACGGAGGAATATGTT
TCCCCCAGGAATGTTTATGGCCGCCTGTTCCCCCTTTAAAAAACCAAAAG
GGACCGGGCCAATTTTTTTGACCGGGGGGCCCACGTGGCTTTCTCAAGGG
GGGTTATAAAATAACCCCCCCTCCCACCTGTTTTGTTCCCTGGGGAGGGG
AGCCCCGGCGCCCAGGGGTTTCCCCCACACACCTGGTTTTTGGTTTGATA
TAACAAACACACCAACCCCCCAACAAACCAGGTGGTG