DY263170

Overview
NameDY263170
Unique NameDY263170
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1317
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263170 vs. ExPASy Swiss-Prot
Match: PAT16_SOLTU (Patatin-16 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.230e-14
Identity = 50/197 (25.38%), Postives = 93/197 (47.21%), Query Frame = 2
Query:  422 VLSIDXXXXXXXXXXXXLIHLEDQIRLKTGDPHAQIADFFDIIAGTGIGALLASMLVADDGSGRPLFTARDALDLITRRNSELFNAGFSAGFLRRKRRFSGKSMDKVLKEIFMRDDGKVLTLKDTCKPLLVPCFDLNSSAPFVFSRADASESPSFNFELWKACRATSATPSMF--KQFALTSVDGKTSCTPLTGGLV 1006
            VLSID            L  LE Q++    +  A++AD+FD+I GT  G LL +M+   + + RP   A + +         +FN+     F    R++ GK + +VL+E           +      + +  FD+ ++ P +F++++ ++SP  + +++  C +T+A P+ F    FA  +++G      L  G V
Sbjct:   31 VLSIDGGGIKGIIPGTILEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAANEIVPFYFEHGPHIFNSSTGQFF----RKYDGKYLMQVLQEKLGE-----TRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPTYFPPHYFATNTINGDKYELNLVDGAV 218          
BLAST of DY263170 vs. ExPASy Swiss-Prot
Match: PATD2_SOLTU (Patatin group D-2 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.231e-13
Identity = 46/180 (25.56%), Postives = 85/180 (47.22%), Query Frame = 2
Query:  422 VLSIDXXXXXXXXXXXXLIHLEDQIRLKTGDPHAQIADFFDIIAGTGIGALLASMLVADDGSGRPLFTARDALDLITRRNSELFNAGFSAGFLRRKRRFSGKSMDKVLKEIFMRDDGKVLTLKDTCKPLLVPCFDLNSSAPFVFSRADASESPSFNFELWKACRATSATPSMFKQFALTS 961
            VLSID            L  LE Q++    +  A++AD+FD+I GT  G LL SM+   + + RP   A + +         +FN+     F     ++ GK + +VL+E           +      + +  FD+ ++ P +F+++D ++SP  + +++  C +T+A P+ F     T+
Sbjct:   31 VLSIDGGGIKGIIPGTILEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTSMITTPNENNRPFAAANEIVPFFFEHGPHIFNSSTGQFF---GPKYDGKYLMQVLQENLGE-----TRVHQALTEVAISSFDIKTNKPVIFTKSDLAKSPELDAKMYDICYSTAAAPTYFPPHYFTT 202          
BLAST of DY263170 vs. ExPASy Swiss-Prot
Match: PT3K1_SOLTU (Patatin-3-Kuras 1 OS=Solanum tuberosum GN=pat3-k1 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.742e-13
Identity = 44/173 (25.43%), Postives = 87/173 (50.29%), Query Frame = 2
Query:  422 VLSIDXXXXXXXXXXXXLIHLEDQIRLKTGDPHAQIADFFDIIAGTGIGALLASMLVADDGSGRPLFTARDALDLITRRNSELFNAGFSAGFLRRKRRFSGKSMDKVLKEIFMRDDGKVLTLKDTCKPLLVPCFDLNSSAPFVFSRADASESPSFNFELWKACRATSATPSMF 940
            VLSID            L  LE Q++    +  A++AD+FD+I GTG G LL +M+   + + RP   A+D +        ++F     +GF   + ++ GK + +VL+E           +      + +  FD+ ++ P +F++++ +++P  + +++  C +T+A P+ F
Sbjct:   19 VLSIDGGGIKGIIPATILEFLEGQLQEVDNNTDARLADYFDVIGGTGTGGLLTAMITTPNENNRPFAAAKDIIPFYFDHGPKIFE---PSGFHLVEPKYDGKYLMQVLQEKLGE-----TRVHQALTEVAISSFDIKTNKPVIFTKSNLAKTPELDAKMYDICYSTAAAPTYF 183          
BLAST of DY263170 vs. ExPASy Swiss-Prot
Match: PT1K2_SOLTU (Patatin-1-Kuras 2 OS=Solanum tuberosum GN=pat1-k2 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.581e-13
Identity = 49/197 (24.87%), Postives = 92/197 (46.70%), Query Frame = 2
Query:  422 VLSIDXXXXXXXXXXXXLIHLEDQIRLKTGDPHAQIADFFDIIAGTGIGALLASMLVADDGSGRPLFTARDALDLITRRNSELFNAGFSAGFLRRKRRFSGKSMDKVLKEIFMRDDGKVLTLKDTCKPLLVPCFDLNSSAPFVFSRADASESPSFNFELWKACRATSATPSMF--KQFALTSVDGKTSCTPLTGGLV 1006
            VLSID            L  LE Q++    +  A++AD+FD+I GT  G LL +M+   + + RP   A + +         +FN+     F     ++ GK + +VL+E           +      + +  FD+ ++ P +F++++ ++SP  + +++  C +T+A P+ F    FA  +++G      L  G V
Sbjct:   19 VLSIDGGGIKGIIPGTILEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAANEIVPFYFEHGPHIFNSSTGQFF---GPKYDGKYLMQVLQEKLGE-----TRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPTYFPPHYFATNTINGDKYKFNLVDGAV 207          
BLAST of DY263170 vs. ExPASy Swiss-Prot
Match: PATA3_SOLTU (Patatin group A-3 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.677e-13
Identity = 46/185 (24.86%), Postives = 89/185 (48.11%), Query Frame = 2
Query:  422 VLSIDXXXXXXXXXXXXLIHLEDQIRLKTGDPHAQIADFFDIIAGTGIGALLASMLVADDGSGRPLFTARDALDLITRRNSELFNAGFSAGFLRRKRRFSGKSMDKVLKEIFMRDDGKVLTLKDTCKPLLVPCFDLNSSAPFVFSRADASESPSFNFELWKACRATSATPSMF--KQFALTSVDG 970
            VLSID            L  LE Q++    +  A++AD+FD+I GT  G LL +M+   + + RP   A + +         +FN+     F     ++ GK + +VL+E           +      + +  FD+ ++ P +F++++ ++SP  + +++  C +T+A P+ F    FA  +++G
Sbjct:   31 VLSIDGGGVKGIIPGTILEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAANEIVPFYFEHGPHIFNSSTGQFF---GPKYDGKYLMQVLQEKLGE-----TRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPTYFPPHYFATNTING 207          
BLAST of DY263170 vs. ExPASy Swiss-Prot
Match: PAT08_SOLTU (Patatin-08 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.677e-13
Identity = 45/180 (25.00%), Postives = 85/180 (47.22%), Query Frame = 2
Query:  422 VLSIDXXXXXXXXXXXXLIHLEDQIRLKTGDPHAQIADFFDIIAGTGIGALLASMLVADDGSGRPLFTARDALDLITRRNSELFNAGFSAGFLRRKRRFSGKSMDKVLKEIFMRDDGKVLTLKDTCKPLLVPCFDLNSSAPFVFSRADASESPSFNFELWKACRATSATPSMFKQFALTS 961
            VLSID            L  LE Q++    +  A++AD+FD+I GT  G LL SM+   + + RP   A + +         +FN+     F     ++ GK + +VL+E           +      + +  FD+ ++ P +F++++ ++SP  + +++  C +T+A P+ F     T+
Sbjct:   31 VLSIDGGGIKGIIPGTILEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTSMITTPNENNRPFAAANEIVPFFFEHGPHIFNSSTGQFF---GPKYDGKYLMQVLQENLGE-----TRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPTYFPPHYFTT 202          
BLAST of DY263170 vs. ExPASy Swiss-Prot
Match: PAT02_SOLTU (Patatin-02 OS=Solanum tuberosum GN=StPat14K07.03 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.677e-13
Identity = 46/185 (24.86%), Postives = 89/185 (48.11%), Query Frame = 2
Query:  422 VLSIDXXXXXXXXXXXXLIHLEDQIRLKTGDPHAQIADFFDIIAGTGIGALLASMLVADDGSGRPLFTARDALDLITRRNSELFNAGFSAGFLRRKRRFSGKSMDKVLKEIFMRDDGKVLTLKDTCKPLLVPCFDLNSSAPFVFSRADASESPSFNFELWKACRATSATPSMF--KQFALTSVDG 970
            VLSID            L  LE Q++    +  A++AD+FD+I GT  G LL +M+   + + RP   A + +         +FN+     F     ++ GK + +VL+E           +      + +  FD+ ++ P +F++++ ++SP  + +++  C +T+A P+ F    FA  +++G
Sbjct:   31 VLSIDGGGIKGIIPGTILEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAANEIVPFYFEHGPHIFNSSTGQFF---GPKYDGKYLMQVLQEKLGE-----TRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPTYFPPHYFATNTING 207          
BLAST of DY263170 vs. ExPASy Swiss-Prot
Match: PAT01_SOLTU (Patatin-01 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.677e-13
Identity = 46/185 (24.86%), Postives = 89/185 (48.11%), Query Frame = 2
Query:  422 VLSIDXXXXXXXXXXXXLIHLEDQIRLKTGDPHAQIADFFDIIAGTGIGALLASMLVADDGSGRPLFTARDALDLITRRNSELFNAGFSAGFLRRKRRFSGKSMDKVLKEIFMRDDGKVLTLKDTCKPLLVPCFDLNSSAPFVFSRADASESPSFNFELWKACRATSATPSMF--KQFALTSVDG 970
            VLSID            L  LE Q++    +  A++AD+FD+I GT  G LL +M+   + + RP   A + +         +FN+     F     ++ GK + +VL+E           +      + +  FD+ ++ P +F++++ ++SP  + +++  C +T+A P+ F    FA  +++G
Sbjct:   31 VLSIDGGGIKGIIPGTILEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAANEIVPFYFEHGPHIFNSSTGQFF---GPKYDGKYLMQVLQEKLGE-----TRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPTYFPPHYFATNTING 207          
BLAST of DY263170 vs. ExPASy Swiss-Prot
Match: PAT0_SOLTU (Patatin OS=Solanum tuberosum PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.042e-12
Identity = 52/197 (26.40%), Postives = 91/197 (46.19%), Query Frame = 2
Query:  422 VLSIDXXXXXXXXXXXXLIHLEDQIRLKTGDPHAQIADFFDIIAGTGIGALLASMLVADDGSGRPLFTARDALDLITRRNSELFNAGFSAGFLRRKRRFSGKSMDKVLKEIFMRDDGKVLTLKDTCKPLLVPCFDLNSSAPFVFSRADASESPSFNFELWKACRATSATPSMF--KQFALTSVDGKTSCTPLTGGLV 1006
            VLSID            L  LE Q++    +  A++AD+FD+I GT  G LL +M+   + + RP   A+D +         +FN  +S        R+ GK + +VL+E           +      + +  FD+ ++ P +F++++ +ESP  + +++  C +T+A P  F    F   + +G T    L  G V
Sbjct:   31 VLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFEHGPHIFN--YSGSIF--GPRYDGKYLLQVLQEKLGE-----TRVHQALTEVAISSFDIKTNKPVIFTKSNLAESPQLDAKMYDICYSTAAAPIYFPPHHFVTHTSNGATYEFNLVDGAV 218          
BLAST of DY263170 vs. ExPASy Swiss-Prot
Match: PAT05_SOLTU (Patatin-05 OS=Solanum tuberosum GN=pat1-k1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.042e-12
Identity = 44/173 (25.43%), Postives = 84/173 (48.55%), Query Frame = 2
Query:  422 VLSIDXXXXXXXXXXXXLIHLEDQIRLKTGDPHAQIADFFDIIAGTGIGALLASMLVADDGSGRPLFTARDALDLITRRNSELFNAGFSAGFLRRKRRFSGKSMDKVLKEIFMRDDGKVLTLKDTCKPLLVPCFDLNSSAPFVFSRADASESPSFNFELWKACRATSATPSMF 940
            VLSID            L  LE Q++    +  A++AD+FD+I GT  G LL +M+   + + RP   A+D +    +    +FN+     F     ++ GK + +VL+E           +      + +  FD+ ++ P +F++++ ++SP  + ++   C +T+A P+ F
Sbjct:   31 VLSIDGGGIKGIIPGIILEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFQHGPHIFNSSTGQFF---GPKYDGKYLMQVLQEKLGE-----TRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMSDICYSTAAAPTYF 195          
The following BLAST results are available for this feature:
BLAST of DY263170 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
PAT16_SOLTU4.230e-1425.38Patatin-16 OS=Solanum tuberosum PE=2 SV=1[more]
PATD2_SOLTU1.231e-1325.56Patatin group D-2 OS=Solanum tuberosum PE=2 SV=1[more]
PT3K1_SOLTU2.742e-1325.43Patatin-3-Kuras 1 OS=Solanum tuberosum GN=pat3-k1 ... [more]
PT1K2_SOLTU3.581e-1324.87Patatin-1-Kuras 2 OS=Solanum tuberosum GN=pat1-k2 ... [more]
PATA3_SOLTU4.677e-1324.86Patatin group A-3 OS=Solanum tuberosum PE=2 SV=1[more]
PAT08_SOLTU4.677e-1325.00Patatin-08 OS=Solanum tuberosum PE=2 SV=1[more]
PAT02_SOLTU4.677e-1324.86Patatin-02 OS=Solanum tuberosum GN=StPat14K07.03 P... [more]
PAT01_SOLTU4.677e-1324.86Patatin-01 OS=Solanum tuberosum PE=2 SV=1[more]
PAT0_SOLTU1.042e-1226.40Patatin OS=Solanum tuberosum PE=3 SV=1[more]
PAT05_SOLTU1.042e-1225.43Patatin-05 OS=Solanum tuberosum GN=pat1-k1 PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA11AA06RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263170 ID=DY263170; Name=DY263170; organism=Citrus clementina; type=EST; length=1317bp
CAGGGACACGCCACTCACTCCCGGTCTTAACTCTTCAACAACTCATAGAC
TAAAAGAGAGAGAAGCAAGGCAGCAGGCAACAGCAACACACAAACAACTC
TCACTCACGCTCCACTTTCACCACTAACTAAGGCCACAGAGGTTTAGAAA
GAGAGAAAGTGATAGATTGAGATTGGACATTGGAGAGAGAGCTAGCTAGC
GTACTGCCTTCTTCTTCAGCTATTTAATGCTCATCATCAACAAACCGTGA
AGCCTCGCTCCCGCTTTCTTTTTCTTCACGGACTCATCAAAACCCTTCAG
TTCACTCCTCTAGCTACCAACAATTTAACTATCAATGGACTTGAGTAAGG
TAACCCTGGAGATCTTCAACAAGCTCGAGCAAAAATGGCTTGCACATTGC
GAACCTACCAAGAGAACTCGAGTCCTCAGCATCGACGGCGGAGGCACCAC
CGGCATTGTAGCTGGCGCTGCTCTTATCCACCTCGAGGACCAGATCCGTC
TCAAAACCGGCGATCCTCATGCTCAAATCGCCGATTTCTTCGACATCATT
GCCGGCACCGGCATTGGTGCCCTCCTCGCCTCCATGCTCGTTGCTGATGA
CGGCTCCGGCCGTCCTCTCTTCACTGCCAGGGACGCCCTCGATTTAATCA
CTCGTAGGAACTCCGAACTATTCAACGCTGGGTTCTCTGCAGGATTTCTC
CGCCGCAAACGTAGATTCTCCGGCAAGAGCATGGATAAGGTGTTGAAAGA
AATTTTCATGAGAGATGACGGTAAGGTCCTGACTCTGAAGGACACGTGTA
AGCCCCTGCTTGTTCCTTGCTTTGACTTGAACAGCTCAGCTCCGTTTGTC
TTCTCTCGAGCGGATGCATCCGAGTCACCTAGCTTTAACTTCGAGCTCTG
GAAAGCATGTCGCGCCACGTCAGCTACGCCCAGCATGTTCAAGCAATTCG
CTTTGACCTCCGTTGACGGCAAGACCAGTTGCACGCCGTTGACGGGTGGT
CTAGTCATGAACAACCCAACAGCAGCACCGGGTACTCATGTGCTGCAAAA
CCAGCGCGAATTTCCCGTCGGGTAAACGGCGCCAAGGAACTTCCAATTCT
GTCCCCGGGGAAAGGGCCCTTAAATCCAGGGAAGGGGGGCCCGGGGGAAA
AAAAAACCCCCTAATAAAACGGGGAAAGGGCCCCCCCCTCTCCTGTATTT
TGAAAATGGGGGCTTTGGGGGGAGCCCCACAAAAAAACAATGTAACCACA
AAAATTTGGGGGGAAAAACAAACTCTCCGGCGGGGGAACAAACCGGGGGC
GCGAAAAACACCCCAAT
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