DY263178

Overview
NameDY263178
Unique NameDY263178
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1362
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY263178 vs. ExPASy Swiss-Prot
Match: RHDF1_DANRE (Rhomboid family member 1 OS=Danio rerio GN=rhbdf1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.206e-11
Identity = 39/121 (32.23%), Postives = 61/121 (50.41%), Query Frame = 3 
Query:  375 QGWRLITCNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGSLLSALFIQSNIXXXXXXXXXXXXXXXXXELITNWTIYTNKIAAFLTLVVIIAINLAVGILPHVDNFAH 737
            Q +RL    +LH G+ H L ++   + I   LE+  G++R+ ++YI+SG  G+L SA+F+                     ELI +W I      AF  L+ ++    A G+LP +DNFAH
Sbjct:  654 QFYRLWLSLFLHAGILHCLVSVCFQMTILRDLEKLAGWLRISIIYILSGITGNLASAIFLPYRAEVGPAGSQFGILACLFVELIQSWQILAQPWRAFTKLLCVVLFLFAFGLLPWIDNFAH 774
The following BLAST results are available for this feature:
BLAST of DY263178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RHDF1_DANRE1.206e-1132.23Rhomboid family member 1 OS=Danio rerio GN=rhbdf1 ... [more]
back to top
Properties
Property NameValue
Genbank descriptionIC0AAA11AB05RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263178 ID=DY263178; Name=DY263178; organism=Citrus clementina; type=EST; length=1362bp
CTCCACCGGGGATCCAAATCAAGGTCAGTTCAAAGGGCGGCGGCGGCAGC
GGCAGCGGCAACACAGTACACCCAGTAGAAGAAATGGACCGGCCGGAAGG
AGTCTCAGCACCACCGCCGGCTGTTTACGGAGAGATCAAGCATTCTAAGA
AATGGGTCACTTGGTTAATCCCTTGTTTTGTGGTTGCAAATATTGCCATG
TTCGTCATCACCATGTACGTCAACAATTGTCCCAAGAACTCGGTTTCTTG
TGTTGCAAGATTTTTAGGTCGATTCTCGTTTCAGCCCTTCAAGGAGAATC
CTCTTCTTGGTCCCTCTTCGGTTACGTTGCAGAAGATGGGGGCTTTAGAT
GTGAGTAAAGTGGTTGACAAACACCAGGGGTGGCGGCTTATCACTTGCAA
TTGGTTACATGGAGGAGTTTTTCATATACTGGCAAATATGTTGAGCCTTT
TAGTTATTGGAATTCGGCTCGAGCAAGAATTTGGGTTCATTCGGGTTGGG
TTGTTATATATCATCTCTGGATTTGGAGGGAGTTTGCTTTCAGCTCTGTT
TATACAGTCAAATATCTCCGTTGGTGCTTCCGGTGCACTTTTTGGCTTAC
TTGGAAGCATGCTTTCTGAACTCATCACTAACTGGACAATATATACTAAT
AAGATAGCAGCATTTTTGACTCTCGTGGTCATCATTGCAATCAATTTAGC
TGTCGGAATCCTCCCGCATGTTGACAACTTTGCTCATATTGGAGGATTTA
TTTCTGGGTTTCTTCTCGGGTTTGTGTTTCTTATTCGCCCCCAGTTTGGA
TGGGTTGAACAGAGATATGCTCTGTCTGGTTATTCAGCTTTGTCTAGAAG
AAATTCAAGACGTATCAGTGCATACTCTGGATAGTTTCTCTCGTCTTTGT
AATTGTTGGGGTTACTCTCAGCTTGGTTATGCTTCTTCGAGGAGTTGATG
CCAATGATCATTGTTCCTGGGTGTCATAATTGGTCCTGTGTCCCTACTTC
AAGAAGGGAACTGGAAAACCAAAGCCGGCTGTCGTGCTCGACACCCAAAA
TGGGAACCAGCTTAATGTAACGTGGCTCAAGCAATGGAAAATCCAACCTT
TTAAATTTTGTCAAACCCCACCAGTTCCCCAAATTCCAAGTTTGTGGCAC
TGAACTTTTTCACCCTAACTTTTTATTGCGGAAAAACAAAAAAACGAAAA
ATAAAATTTTTAAAGATTATTTTTTTTAAGGGGGTGTACCCAAAAAAAAC
ACGCATTTTTTATTTTTTTCCCGGGAAACAAATTTTTTATTTCCCATATT
AACAAGCGGGGCCCCTTCTCCCCCCCCTCCTTTTTTGTGGATTTTTTTTT
TTTTTATTTTTT
back to top