DY263189

Overview
NameDY263189
Unique NameDY263189
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length989
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY263189 vs. ExPASy Swiss-Prot
Match: CH10C_ARATH (20 kDa chaperonin, chloroplastic OS=Arabidopsis thaliana GN=CPN21 PE=1 SV=2)

HSP 1 Score: 353.214 bits (905), Expect = 1.339e-96
Identity = 183/253 (72.33%), Postives = 206/253 (81.42%), Query Frame = 3 
Query:   81 MATAQLTASSIKVPARSLTSFDGLRPSSVKFASVG-GAPSQRSFRRLXXXXXXXXXPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGAGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 836
            MA  QLTAS + + ARSL S DGLR SSVKF+S+  G   Q  FRRL         PKYTSIKPLGDRVLVKIK  EEKT GGI LPSTAQ+KPQ GEVVAVGEG+T+GK K+DI+V  G Q+IYSKYAGTE+EFN   HLIL+EDD+VGILET++IKDLKPLNDRVFIKVAEAEE TAGGLLLTE +KEKPSIG VIAVG G LDEEG   PL ++ G+TV+YSKYAGNDFKG DG+NYIALRAS+VMA+LS
Sbjct:    1 MAATQLTASPVTMSARSLASLDGLRASSVKFSSLKPGTLRQSQFRRLVVKAASVVAPKYTSIKPLGDRVLVKIKEAEEKTLGGILLPSTAQSKPQGGEVVAVGEGRTIGKNKIDITVPTGAQIIYSKYAGTEVEFNDVKHLILKEDDIVGILETEDIKDLKPLNDRVFIKVAEAEEKTAGGLLLTETTKEKPSIGTVIAVGPGSLDEEGKITPLPVSTGSTVLYSKYAGNDFKGKDGSNYIALRASDVMAILS 253
[Close]
BLAST of DY263189 vs. ExPASy Swiss-Prot
Match: CH10C_SPIOL (20 kDa chaperonin, chloroplastic OS=Spinacia oleracea GN=CPN21 PE=2 SV=1)

HSP 1 Score: 298.516 bits (763), Expect = 3.913e-80
Identity = 152/256 (59.38%), Postives = 191/256 (74.61%), Query Frame = 3 
Query:   81 MATAQLTASSIKVPARSLTSFDGLRPSS----VKFASVGGAPSQRSFRRLXXXXXXXXXPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGAGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 836
            MA   LT++S  +   +L SF+GLR +S    +  +    + + RSFR L          KYTS+KPLGDRVL+K K VEEKT  GIFLP+ AQ KPQ+GEVVA+G GK VG  KL ++VK G +V+YSKY GTE+E +G++HLI++EDD++GILETD++KDLKPLNDR+ IKVAE E  T+GGLLL E+SKEKPS G V+A G G LDEEGNR PL +  GNTV+YSKYAGNDFKG DG++Y+ LR S+VMAVLS
Sbjct:    1 MAATHLTSTS-SLTINTLPSFEGLRSASGISKINVSVAYPSFTSRSFRGLVVRAASITTSKYTSVKPLGDRVLIKTKIVEEKTTSGIFLPTAAQKKPQSGEVVAIGSGKKVGDKKLPVAVKTGAEVVYSKYTGTEIEVDGSSHLIVKEDDIIGILETDDVKDLKPLNDRLLIKVAEVENKTSGGLLLAESSKEKPSFGTVVATGPGVLDEEGNRIPLPVCSGNTVLYSKYAGNDFKGVDGSDYMVLRVSDVMAVLS 255
[Close]
BLAST of DY263189 vs. ExPASy Swiss-Prot
Match: CH10_RHOMR (10 kDa chaperonin OS=Rhodothermus marinus GN=groS PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.743e-23
Identity = 48/95 (50.53%), Postives = 72/95 (75.79%), Query Frame = 3 
Query:  261 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILETDE 545
            IKPL DRV++K +  EEKT+ G+++P TA+ KPQ G V+AVG G+    TK+++SVK G +V+Y KYAGTE+  +G  +LI+RE D++GI+E ++
Sbjct:    6 IKPLSDRVVIKPEPPEEKTESGLYIPDTAKEKPQRGTVIAVGPGRVENGTKIEMSVKEGDKVLYGKYAGTEITIDGEEYLIMRETDILGIIEEEK 100

HSP 2 Score: 75.0998 bits (183), Expect = 7.037e-13
Identity = 38/93 (40.86%), Postives = 58/93 (62.37%), Query Frame = 3 
Query:  555 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGAGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 833
            +KPL+DRV IK    EE T  GL + + +KEKP  G VIAVG G + E G +  +S+  G+ V+Y KYAG +    DG  Y+ +R ++++ ++
Sbjct:    6 IKPLSDRVVIKPEPPEEKTESGLYIPDTAKEKPQRGTVIAVGPGRV-ENGTKIEMSVKEGDKVLYGKYAGTEIT-IDGEEYLIMRETDILGII 96
[Close]
BLAST of DY263189 vs. ExPASy Swiss-Prot
Match: CH10_THEPX (10 kDa chaperonin OS=Thermoanaerobacter sp. (strain X514) GN=groS PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 9.796e-23
Identity = 50/92 (54.35%), Postives = 70/92 (76.09%), Query Frame = 3 
Query:  261 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 536
            +KPLGDRV+VK+   EE T GG+ LP TA+ KPQ GEVVAVG G+ +   K+++ VK G +VI+SKYAGTE++ +G  +L+LRE D++ I+E
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGQYIDGKKVELEVKVGDRVIFSKYAGTEVKLDGEEYLLLRESDILAIIE 94

HSP 2 Score: 83.5741 bits (205), Expect = 1.978e-15
Identity = 43/93 (46.24%), Postives = 62/93 (66.67%), Query Frame = 3 
Query:  555 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGAGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 833
            LKPL DRV +KV +AEE T GG++L   +KEKP  G V+AVG G    +G +  L +  G+ V++SKYAG + K  DG  Y+ LR S+++A++
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGQY-IDGKKVELEVKVGDRVIFSKYAGTEVK-LDGEEYLLLRESDILAII 93
[Close]
BLAST of DY263189 vs. ExPASy Swiss-Prot
Match: CH10_THEP3 (10 kDa chaperonin OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=groS PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 9.796e-23
Identity = 50/92 (54.35%), Postives = 70/92 (76.09%), Query Frame = 3 
Query:  261 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 536
            +KPLGDRV+VK+   EE T GG+ LP TA+ KPQ GEVVAVG G+ +   K+++ VK G +VI+SKYAGTE++ +G  +L+LRE D++ I+E
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGQYIDGKKVELEVKVGDRVIFSKYAGTEVKLDGEEYLLLRESDILAIIE 94

HSP 2 Score: 83.5741 bits (205), Expect = 1.978e-15
Identity = 43/93 (46.24%), Postives = 62/93 (66.67%), Query Frame = 3 
Query:  555 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGAGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 833
            LKPL DRV +KV +AEE T GG++L   +KEKP  G V+AVG G    +G +  L +  G+ V++SKYAG + K  DG  Y+ LR S+++A++
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGQY-IDGKKVELEVKVGDRVIFSKYAGTEVK-LDGEEYLLLRESDILAII 93
[Close]
BLAST of DY263189 vs. ExPASy Swiss-Prot
Match: CH10_THEBR (10 kDa chaperonin OS=Thermoanaerobacter brockii GN=groS PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 9.796e-23
Identity = 50/92 (54.35%), Postives = 70/92 (76.09%), Query Frame = 3 
Query:  261 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 536
            +KPLGDRV+VK+   EE T GG+ LP TA+ KPQ GEVVAVG G+ +   K+++ VK G +VI+SKYAGTE++ +G  +L+LRE D++ I+E
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGEYIDGKKVELEVKVGDRVIFSKYAGTEVKLDGEEYLLLRESDILAIIE 94

HSP 2 Score: 83.5741 bits (205), Expect = 1.978e-15
Identity = 43/93 (46.24%), Postives = 62/93 (66.67%), Query Frame = 3 
Query:  555 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGAGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 833
            LKPL DRV +KV +AEE T GG++L   +KEKP  G V+AVG G    +G +  L +  G+ V++SKYAG + K  DG  Y+ LR S+++A++
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGEY-IDGKKVELEVKVGDRVIFSKYAGTEVK-LDGEEYLLLRESDILAII 93
[Close]
BLAST of DY263189 vs. ExPASy Swiss-Prot
Match: CH10_NATTJ (10 kDa chaperonin OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=groS PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.722e-22
Identity = 49/94 (52.13%), Postives = 72/94 (76.60%), Query Frame = 3 
Query:  258 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 536
            ++KPLGDR+++KI   EEKT+ GI LP  A+ KPQ GEVVAVG GKT+   +K++  VK G +V+YSK+AG E+E +G  +LI+R+DD++ ++E
Sbjct:    2 NLKPLGDRIVIKILEAEEKTESGIVLPEKAKEKPQEGEVVAVGSGKTLDDGSKVEPEVKAGDKVVYSKFAGNEVEVDGEEYLIMRQDDILAVIE 95

HSP 2 Score: 86.6557 bits (213), Expect = 2.337e-16
Identity = 41/94 (43.62%), Postives = 65/94 (69.15%), Query Frame = 3 
Query:  552 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGAGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 833
            +LKPL DR+ IK+ EAEE T  G++L E +KEKP  G V+AVG+G   ++G++    +  G+ V+YSK+AGN+ +  DG  Y+ +R  +++AV+
Sbjct:    2 NLKPLGDRIVIKILEAEEKTESGIVLPEKAKEKPQEGEVVAVGSGKTLDDGSKVEPEVKAGDKVVYSKFAGNEVE-VDGEEYLIMRQDDILAVI 94
[Close]
BLAST of DY263189 vs. ExPASy Swiss-Prot
Match: CH10_DESVV (10 kDa chaperonin OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=groS PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.083e-21
Identity = 50/94 (53.19%), Postives = 69/94 (73.40%), Query Frame = 3 
Query:  258 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 536
            ++KPL DRVLVK    EEKT GG+++P TA+ KP  GEVVA G GKT    KL  ++VK G  V+++KYAGTE++ +G  HL++REDD++ I+E
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAAGPGKTADDGKLVAMTVKAGDMVLFNKYAGTEIKIDGVEHLVMREDDILAIIE 95

HSP 2 Score: 86.2705 bits (212), Expect = 3.052e-16
Identity = 39/94 (41.49%), Postives = 64/94 (68.09%), Query Frame = 3 
Query:  552 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGAGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 833
            +LKPLNDRV +K  E+EE TAGGL + + +KEKPS G V+A G G   ++G    +++  G+ V+++KYAG + K  DG  ++ +R  +++A++
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAAGPGKTADDGKLVAMTVKAGDMVLFNKYAGTEIK-IDGVEHLVMREDDILAII 94
[Close]
BLAST of DY263189 vs. ExPASy Swiss-Prot
Match: CH10_DESVH (10 kDa chaperonin OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=groS PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.083e-21
Identity = 50/94 (53.19%), Postives = 69/94 (73.40%), Query Frame = 3 
Query:  258 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 536
            ++KPL DRVLVK    EEKT GG+++P TA+ KP  GEVVA G GKT    KL  ++VK G  V+++KYAGTE++ +G  HL++REDD++ I+E
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAAGPGKTADDGKLVAMTVKAGDMVLFNKYAGTEIKIDGVEHLVMREDDILAIIE 95

HSP 2 Score: 86.2705 bits (212), Expect = 3.052e-16
Identity = 39/94 (41.49%), Postives = 64/94 (68.09%), Query Frame = 3 
Query:  552 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGAGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 833
            +LKPLNDRV +K  E+EE TAGGL + + +KEKPS G V+A G G   ++G    +++  G+ V+++KYAG + K  DG  ++ +R  +++A++
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAAGPGKTADDGKLVAMTVKAGDMVLFNKYAGTEIK-IDGVEHLVMREDDILAII 94
[Close]
BLAST of DY263189 vs. ExPASy Swiss-Prot
Match: CH10_DESHY (10 kDa chaperonin OS=Desulfitobacterium hafniense (strain Y51) GN=groS PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.083e-21
Identity = 49/92 (53.26%), Postives = 69/92 (75.00%), Query Frame = 3 
Query:  258 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 533
            +IKPLGDRV++K   +EEKT  GI +P TA+ KPQ GEVVAVG GK     ++ + VK G +VIYSKYAGTE++++G  +LIL+E D++ ++
Sbjct:    2 NIKPLGDRVVIKALPMEEKTKSGIIMPDTAKEKPQEGEVVAVGPGKMEKGERIVLDVKVGDRVIYSKYAGTEVKYDGQEYLILKETDILAVI 93

HSP 2 Score: 80.8777 bits (198), Expect = 1.282e-14
Identity = 41/94 (43.62%), Postives = 62/94 (65.96%), Query Frame = 3 
Query:  552 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGAGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 833
            ++KPL DRV IK    EE T  G+++ + +KEKP  G V+AVG G + E+G R  L +  G+ V+YSKYAG + K  DG  Y+ L+ ++++AV+
Sbjct:    2 NIKPLGDRVVIKALPMEEKTKSGIIMPDTAKEKPQEGEVVAVGPGKM-EKGERIVLDVKVGDRVIYSKYAGTEVK-YDGQEYLILKETDILAVI 93
The following BLAST results are available for this feature:
BLAST of DY263189 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH10C_ARATH1.339e-9672.3320 kDa chaperonin, chloroplastic OS=Arabidopsis th... [more]
CH10C_SPIOL3.913e-8059.3820 kDa chaperonin, chloroplastic OS=Spinacia olera... [more]
CH10_RHOMR5.743e-2350.5310 kDa chaperonin OS=Rhodothermus marinus GN=groS ... [more]
CH10_THEPX9.796e-2354.3510 kDa chaperonin OS=Thermoanaerobacter sp. (strai... [more]
CH10_THEP39.796e-2354.3510 kDa chaperonin OS=Thermoanaerobacter pseudethan... [more]
CH10_THEBR9.796e-2354.3510 kDa chaperonin OS=Thermoanaerobacter brockii GN... [more]
CH10_NATTJ3.722e-2252.1310 kDa chaperonin OS=Natranaerobius thermophilus (... [more]
CH10_DESVV1.083e-2153.1910 kDa chaperonin OS=Desulfovibrio vulgaris subsp.... [more]
CH10_DESVH1.083e-2153.1910 kDa chaperonin OS=Desulfovibrio vulgaris (strai... [more]
CH10_DESHY1.083e-2153.2610 kDa chaperonin OS=Desulfitobacterium hafniense ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA11AC04RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263189 ID=DY263189; Name=DY263189; organism=Citrus clementina; type=EST; length=989bp
ACCTTATCAAACTACTCGCTCGCTTCTCGCTTATCATTTCCAATCAGAAT
CTCTCTCGCTCTCTCTGCATCTGCAAGCAGATGGCGACAGCTCAGCTAAC
AGCGTCATCAATTAAGGTTCCAGCAAGGAGCTTGACTTCATTCGATGGTC
TCAGACCGTCTTCCGTCAAGTTCGCTTCCGTCGGAGGTGCTCCCAGCCAA
CGCTCTTTCCGTCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGCTCCCAA
GTACACTTCAATTAAACCTTTGGGTGATAGAGTGCTGGTGAAAATCAAGA
CTGTAGAGGAGAAAACTGATGGTGGTATTTTTCTGCCATCTACAGCTCAA
ACAAAGCCTCAAGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAAGACAGT
TGGGAAGACTAAACTGGACATATCTGTGAAGCCTGGGACCCAGGTCATCT
ATTCGAAGTATGCAGGGACTGAGTTGGAGTTCAATGGCGCAAATCATCTC
ATATTGAGGGAGGATGACGTAGTTGGCATTCTTGAAACAGATGAAATCAA
GGATCTTAAGCCCCTTAATGACAGAGTTTTCATCAAGGTTGCTGAGGCTG
AGGAGACAACTGCTGGAGGTTTGTTGTTGACGGAGGCAAGCAAGGAGAAA
CCTTCCATTGGAATGGTCATTGCTGTTGGAGCCGGTCCTCTAGATGAGGA
AGGTAATAGGAAACCTCTATCCATTGCACCAGGGAACACGGTGATGTATT
CCAAGTATGCAGGGAATGACTTCAAGGGCAGTGATGGTACCAACTACATT
GCTTTAAGAGCTTCTGAAGTGATGGCTGTGCTCTCTTAGTTGTCTGTGTT
TACTTGAGCGAGGCTTTATATGTATATGTGAATTGAATTTTAATGTTGAG
TTGCCTCAAGGCATACGGATTTTGAATGTAATCTTATTTGAACATAAGAA
TTGCAGCTTGATCATTCAATTGCTGCCTGTTTTTGGCTT
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