DY263223

Overview
NameDY263223
Unique NameDY263223
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1311
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263223 vs. ExPASy Swiss-Prot
Match: P2A15_ARATH (F-box protein PP2-A15 OS=Arabidopsis thaliana GN=PP2A15 PE=2 SV=1)

HSP 1 Score: 425.246 bits (1092), Expect = 4.079e-118
Identity = 207/299 (69.23%), Postives = 242/299 (80.94%), Query Frame = 3
Query:  228 MGASLSSLTD--NGESMGPGLGDIPESCVACVFMYLTPPEICNLARLNHAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKDIFALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKFPLPADVYTVSFRLHLGRFAKRLGRRVCNFEHTHGWDIKPVRLELSTSDGQQASSECYLDEMEQDDANGYHKRGCWIDNKEGEFVAMNSKQAMKSNFS*NR*IGQPPRVGLFGKFRGLNPRHFEKGQKGKGVLKE 1118
            MG+SLS+L D  NG +MGPGLGDIPESCVACVFMYLTPPEICNLA LN +FRGAASSDSVWE KLP NYQDLLDL+PPERY +LSKKDIFA+LSRP+PFDD NKEVW+DRVTGRVC++IS + M+ITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDG V+F LP  VY++SFR+HLGRF KRLGRRVC+FE THGWD+KPVR  LSTSDGQ+AS E YLD++E+++A G HKRG WI+ + GEF+   S+ + +  +S  +      + GL      +NP    K  K K VLKE
Sbjct:    1 MGSSLSNLNDGTNGLAMGPGLGDIPESCVACVFMYLTPPEICNLAGLNRSFRGAASSDSVWEKKLPENYQDLLDLLPPERYHSLSKKDIFAVLSRPIPFDDDNKEVWIDRVTGRVCMAISARGMSITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGTVRFHLPPGVYSLSFRIHLGRFTKRLGRRVCHFELTHGWDLKPVRFSLSTSDGQEASCEYYLDDVERNEALGKHKRGYWIEYRVGEFIVNGSEPSTEIQWSMKQIDCTHSKGGLCVDSVFINPIGDVKEHKRKAVLKE 299          
BLAST of DY263223 vs. ExPASy Swiss-Prot
Match: P2A12_ARATH (F-box protein PP2-A12 OS=Arabidopsis thaliana GN=P2A12 PE=2 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 2.425e-70
Identity = 135/258 (52.33%), Postives = 169/258 (65.50%), Query Frame = 3
Query:  237 SLSSLTDNGESMGPGLGDIPESCVACVFMYLTPPEICNLARLNHAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKDIFALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKFPLPADVYTVSFRLHLGRFAKRLGRRVCNFEHTHGWDIKPVRLELSTSDGQQASSECYLDEMEQDDANGYHKRGCWIDNKEGEFVAMNS-KQAMKSNFS 1007
            S SS   +   + PGLGD+PE+CVA +   L P EIC  ++LN AFRGA+ +D VWE+KLP NY+D+L+ +      NL K+ ++A LSR   FDD  K+VW+D+ T  VCLSIS K ++ITGI+DRRYW+ IPT+ESRF  VAYLQQIWWFEVDG + FP P   Y++ FRL LGR  K  GRRVCN E  HGWDIKPVR +L T DGQ +SS+C L E           RG WI    G+ V   S + + K  FS
Sbjct:   13 SSSSCFGDRNILKPGLGDLPEACVAIIVENLDPVEICRFSKLNRAFRGASWADCVWESKLPQNYRDVLEKILGGFPENLQKRHLYAFLSRINSFDDATKKVWIDKRTSGVCLSISAKGLSITGIDDRRYWSHIPTDESRFSSVAYLQQIWWFEVDGEIDFPFPVGTYSIFFRLQLGRSGKWFGRRVCNTEQVHGWDIKPVRFQLWTEDGQYSSSQCMLTE-----------RGNWIHYHAGDVVVRESNRSSTKIKFS 259          
BLAST of DY263223 vs. ExPASy Swiss-Prot
Match: P2A13_ARATH (F-box protein PP2-A13 OS=Arabidopsis thaliana GN=PP2A13 PE=1 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 2.964e-68
Identity = 134/267 (50.19%), Postives = 175/267 (65.54%), Query Frame = 3
Query:  228 MGASLSS------LTDNGESMGPGLGDIPESCVACVFMYLTPPEICNLARLNHAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLN-LSKKDIFALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKFPLPADVYTVSFRLHLGRFAKRLGRRVCNFEHTHGWDIKPVRLELSTSDGQQASSECYLDEMEQDDANGYHKRGCWIDNKEGEFVAMNSKQAMKSNFS 1007
            MGA++S         D+  S    L D+PE+CVA +   L PPEIC LARLN  FR A+S+D +WE+KLP+NY+ +   +  E  L  L KKD++A LS+P  FDDG KE+W+D+ TGR+CLSIS+KA+ ITGI+DRRYW+ IPT+ESRF   AY+QQIWWFEV G  +   P+  Y++ FR+ LG+ +KRLGRR+CN EH HGWDIKPVR +L+TSD QQA S CYL+          +  G W     G+F   N   +    FS
Sbjct:    1 MGANISGGSPEFDRNDDVYSRKLRLVDLPENCVALIMTRLDPPEICRLARLNRMFRRASSADFIWESKLPANYRVIAHKVFDEITLTKLIKKDLYAKLSQPNLFDDGTKELWIDKNTGRLCLSISSKALRITGIDDRRYWSHIPTDESRFQSAAYVQQIWWFEVGGEFEIQFPSGTYSLFFRIQLGKTSKRLGRRICNSEHIHGWDIKPVRFQLATSDNQQAVSLCYLN----------NNPGSWSHYHVGDFKVTNPDVSTGIKFS 257          
BLAST of DY263223 vs. ExPASy Swiss-Prot
Match: P2A11_ARATH (F-box protein PP2-A11 OS=Arabidopsis thaliana GN=PP2A11 PE=1 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 1.054e-65
Identity = 124/251 (49.40%), Postives = 166/251 (66.14%), Query Frame = 3
Query:  237 SLSSLTDNGESMGPGLGDIPESCVACVFMYLTPPEICNLARLNHAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKDIFALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKFPLPADVYTVSFRLHLGRFAKRLGRRVCNFEHTHGWDIKPVRLELSTSDGQQASSECYLDEMEQDDANGYHKRGCWIDNKEGEFVAMNSKQA 989
            +LSS   + + + PGLGD+PESCVA +   L P EIC  ++LN AF GA+ +D VWE+KLP +Y+ +L+ +      NL K+DIF  LSR   FD+GNK+ W+D+ TG +CL  S K ++ITGI+DRRYW+ IP+++SRF  VAY+QQIWWF+VDG + FP PA  Y+V FRL LG+  KR G +V + E  HGW+IKPVR +LST DGQ +SS+C L E            G W     G+FV   SK +
Sbjct:   11 NLSSCYGDRDLLQPGLGDLPESCVALILQNLDPVEICRFSKLNTAFHGASWADFVWESKLPPDYKLILEKILGSFPDNLRKRDIFTFLSRVNSFDEGNKKAWVDKRTGGLCLCTSAKGLSITGIDDRRYWSHIPSDDSRFASVAYVQQIWWFQVDGEIDFPFPAGTYSVYFRLQLGKPGKRFGWKVVDTEQVHGWNIKPVRFQLSTEDGQHSSSQCMLTE-----------AGNWSHYHAGDFVVGKSKSS 250          
BLAST of DY263223 vs. ExPASy Swiss-Prot
Match: P2A14_ARATH (F-box protein PP2-A14 OS=Arabidopsis thaliana GN=PP2A14 PE=1 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 3.510e-61
Identity = 122/269 (45.35%), Postives = 169/269 (62.83%), Query Frame = 3
Query:  228 MGASLSSLTDNGESMGP--GLGDIPESCVACVFMYLTPPEICNLARLNHAFRGAASSDSVWENKLPSNYQDLLDLMPPERY-------LNLSKKDIFALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKFPLPADVYTVSFRLHLGRFAKRLGRRVCNFEHTHGWDIKPVRLELSTSDGQQASSECYLDEMEQDDANGYHKRGCWIDNKEGEFVAMNSKQAMKSNFS 1007
            MGA+ SS+  +    G   GL D+PE+C+  +FMY+ PPEIC LAR+N +F  A+ SD+VWE+KLPSNY+ L+  +  ++        L   KK+I+A L RP  FD G KE WLD+ +G+V L+IS KAM ITGI+DRRYW  I ++ESRF  + YL+QIWW E  G ++F      Y++ F++ LG+  ++ GR+ C+ +  HGWDIKPVR +LSTSDGQ A SE +LDE            G W+ +  G+FV  N    +   FS
Sbjct:    1 MGAASSSIVRSEPFAGKLCGLEDVPENCITAMFMYMEPPEICLLARVNKSFHRASRSDAVWEDKLPSNYKFLVRRILEDQQQVGVKDKLIYRKKEIYARLCRPNLFDTGTKEAWLDKRSGKVFLAISPKAMKITGIDDRRYWEHISSDESRFGSITYLRQIWWLEAVGKIRFEFAPGKYSLLFKIQLGKPIRKCGRKTCSLDQVHGWDIKPVRFQLSTSDGQCAMSERHLDE-----------SGRWVYHHAGDFVVENQNSPVWVKFS 258          
BLAST of DY263223 vs. ExPASy Swiss-Prot
Match: P2B10_ARATH (F-box protein PP2-B10 OS=Arabidopsis thaliana GN=PP2B10 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.179e-24
Identity = 51/137 (37.23%), Postives = 80/137 (58.39%), Query Frame = 3
Query:  294 PESCVACVFMYLTPPEICNLARLNHAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKDIFALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDG 704
            PE C++ +  +  P + C  A ++  F     SD +WE  LP++Y+ L+   PP R  +  K+  F+L + PV FDD  K VWL++ +G+ CL +S   ++I   ++ +YW WIP  ESRF  VA L+ + WFE+ G
Sbjct:   18 PEDCISYIISFTNPRDACVAATVSKTFESTVKSDIIWEKFLPADYESLI---PPSRVFSSKKELYFSLCNDPVLFDDDKKSVWLEKASGKRCLMLSAMNLSIIWGDNPQYWQWIPIPESRFEKVAKLRDVCWFEIRG 151          
BLAST of DY263223 vs. ExPASy Swiss-Prot
Match: PP2B2_ARATH (Putative F-box protein PP2-B2 OS=Arabidopsis thaliana GN=PP2B2 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 9.983e-24
Identity = 56/146 (38.36%), Postives = 82/146 (56.16%), Query Frame = 3
Query:  273 GPGLGD-IPESCVACVFMYLTPPEICNLARLNHAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKDIFALLSRPVPFDDGNKEVWLDRVTGRVCLSIS-TKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDG 704
            GP L D +PE C++ +  + +P + C  A ++  F  A +SDSVW+  LPS+Y     L+PP R  +  K+  FA+   PV  +DG K  WL++  G+ C  +S  K+M IT +   +YW WI   E+RF  V  L  + WFEV G
Sbjct:   38 GPSLFDNLPEDCISNIISFTSPRDACVAASVSKTFESAVNSDSVWDKFLPSDYS---SLVPPSRVFSSKKELYFAICDNPVLVEDGGKSFWLEKENGKKCFMLSPKKSMWITWVSTPQYWRWISIPEARFEEVPELLNVCWFEVRG 180          
BLAST of DY263223 vs. ExPASy Swiss-Prot
Match: FB95_ARATH (F-box protein At2g02240 OS=Arabidopsis thaliana GN=At2g02240 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.883e-22
Identity = 53/151 (35.10%), Postives = 80/151 (52.98%), Query Frame = 3
Query:  261 GESMGPGLGD---IPESCVACVFMYLTPPEICNLARLNHAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKDIFALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDG 704
            GE + PG      +PE C++ +  + +P + C  A ++  F  A SSD VW+  LP  Y+ L+      R     K+  FAL   PV  +DG K  WL++ +G+ C+ +S+K + IT      YW WI   ESRF+ +A L  + WFE+ G
Sbjct:   51 GEIVSPGTSPFDVLPEDCISNIISFTSPRDACVAASVSKTFESAVSSDCVWDKFLPPEYESLVSR---SRVFASKKELYFALCHNPVLIEDGKKSFWLEKASGKRCIMLSSKELWITWGSSPEYWQWISIPESRFNKIAELLDVCWFEIRG 198          
BLAST of DY263223 vs. ExPASy Swiss-Prot
Match: PP2B8_ARATH (Putative F-box protein PP2-B8 OS=Arabidopsis thaliana GN=PP2B8 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 6.056e-21
Identity = 50/142 (35.21%), Postives = 79/142 (55.63%), Query Frame = 3
Query:  282 LGDIPESCVACVFMYLTPPEICNLARLNHAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKDI-FALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDG 704
            L D+PE CV+ +  + +P + C LA ++  F  A  SD VWE  +P  Y+ L+      ++L  SKK++ FAL  + V  DDG K +W+++   + C+ IS   +AI      + W WIP  ++RF  VA L ++  FE+ G
Sbjct:   36 LDDLPEECVSIIVSFTSPQDACVLASVSKTFASAVKSDIVWEKFIPPEYESLISQSRAFKFL--SKKELYFALCDKSVLIDDGKKSLWIEKANAKRCIMISAMNLAIAWGNSPQSWRWIPDPQARFETVAELLEVCLFEIRG 175          
BLAST of DY263223 vs. ExPASy Swiss-Prot
Match: PP2B6_ARATH (Putative F-box protein PP2-B6 OS=Arabidopsis thaliana GN=PP2B6 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.006e-20
Identity = 59/175 (33.71%), Postives = 92/175 (52.57%), Query Frame = 3
Query:  213 KLKIEMGASLSSLTDNGESMGPGLG----------DIPESCVACVFMYLTPPEICNLARLNHAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKDI-FALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDG 704
            K++  +G+S      + ES+G G G          D+PE C++ +  + +P ++C  A ++ +F  A   DS+WE  LPS Y+ L+   PP R  + SKKD+ F L   PV  +DG K  WL+  +G+ C+ ++ K + ITG  +  YW WI   ES F  V  L     F++ G
Sbjct:   12 KIRQVLGSSSKVQKHDVESIGGGGGEIVPGHSPFDDLPEDCISNIISFTSPRDVCVSASVSKSFAHAVQCDSIWEKFLPSEYESLI---PPWRVFS-SKKDLYFTLCYDPVLVEDGKKSFWLETASGKKCVLLAAKELWITGGNNPEYWQWIELCESSFEKVPELLNNRSFQMGG 182          
The following BLAST results are available for this feature:
BLAST of DY263223 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
P2A15_ARATH4.079e-11869.23F-box protein PP2-A15 OS=Arabidopsis thaliana GN=P... [more]
P2A12_ARATH2.425e-7052.33F-box protein PP2-A12 OS=Arabidopsis thaliana GN=P... [more]
P2A13_ARATH2.964e-6850.19F-box protein PP2-A13 OS=Arabidopsis thaliana GN=P... [more]
P2A11_ARATH1.054e-6549.40F-box protein PP2-A11 OS=Arabidopsis thaliana GN=P... [more]
P2A14_ARATH3.510e-6145.35F-box protein PP2-A14 OS=Arabidopsis thaliana GN=P... [more]
P2B10_ARATH1.179e-2437.23F-box protein PP2-B10 OS=Arabidopsis thaliana GN=P... [more]
PP2B2_ARATH9.983e-2438.36Putative F-box protein PP2-B2 OS=Arabidopsis thali... [more]
FB95_ARATH1.883e-2235.10F-box protein At2g02240 OS=Arabidopsis thaliana GN... [more]
PP2B8_ARATH6.056e-2135.21Putative F-box protein PP2-B8 OS=Arabidopsis thali... [more]
PP2B6_ARATH3.006e-2033.71Putative F-box protein PP2-B6 OS=Arabidopsis thali... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA11AF07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263223 ID=DY263223; Name=DY263223; organism=Citrus clementina; type=EST; length=1311bp
AAAAATAAAAATATCGAACACGAGTCGCACACAGCACGCTCTTGACTTTC
TCCCTAACCAAACATCCTCTCTCTCTCTCTCTCTCTCTCTCTCGCTTTAT
CCTTCAGTCTCTTCTCCACCATGACGACGAGTTAGGCATAAGCAACAGCA
CAAACACGCAAAGCGAAGAAGAAGAAGGGAAAAAAAGGCTTTGGTAAATT
CAGTAAAGTAATAAATTAAAAATAGAAATGGGGGCGTCGCTATCGAGCCT
GACCGACAACGGAGAGAGCATGGGGCCGGGACTGGGAGACATACCGGAGA
GCTGCGTGGCGTGCGTGTTCATGTACTTGACGCCGCCGGAGATTTGCAAT
CTCGCCAGATTAAACCACGCTTTCCGCGGTGCGGCGTCGTCTGATTCCGT
GTGGGAAAACAAGCTCCCTTCTAACTATCAAGATCTGCTCGATTTGATGC
CTCCTGAACGCTACCTTAACTTGTCCAAAAAAGACATTTTTGCCCTCCTC
TCCCGCCCGGTTCCCTTCGATGATGGCAATAAGGAAGTGTGGTTAGATAG
AGTGACGGGAAGAGTTTGCTTGTCAATATCAACAAAGGCTATGGCAATCA
CCGGAATTGAGGATCGCAGATATTGGAATTGGATTCCCACTGAAGAATCA
AGATTCCATGTGGTGGCGTATTTGCAACAAATATGGTGGTTCGAGGTGGA
TGGGGTAGTGAAGTTTCCACTTCCTGCTGATGTCTACACCGTGTCATTCA
GGCTTCATCTTGGAAGATTTGCCAAGAGATTGGGGCGACGAGTGTGTAAC
TTTGAACATACCCATGGTTGGGATATAAAGCCTGTACGGTTGGAGTTGTC
TACTTCAGATGGTCAGCAAGCATCATCTGAGTGCTATTTGGACGAGATGG
AACAAGATGACGCGAATGGCTACCATAAGCGTGGTTGTTGGATAGATAAT
AAGGAAGGTGAGTTTGTGGCCATGAATTCGAAACAGGCAATGAAGTCCAA
TTTTTCATGAAACAGATAAATTGGACAACCTCCAAGGGTTGGTCTTTTTG
GTAAATTTCGGGGTTTAAATCCCCGCCATTTTGAGAAAGGGCAAAAAGGG
AAGGGGGTTTTAAAGGAGGGCAAAATCTTGGGGGATTTTTTACAATTTCT
TTTGGGTTTTTTAGTTTTTGGGGGCTTTTGTTGGGGGTTCCCCCCCCTGT
TGTTTTGTTTGGGGGGCCTTTTTGTGTTTATATCTTTTTTTTGTATATAT
TTTAAAAAAGAGGGGGGAGGGCGCCAAAAACGGGGTGGGAATAATTTTCC
TTACCATAATT
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