DY263267

Overview
NameDY263267
Unique NameDY263267
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1368
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY263267 vs. ExPASy Swiss-Prot
Match: APL_ARATH (Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 7.278e-49
Identity = 103/157 (65.61%), Postives = 120/157 (76.43%), Query Frame = 2 
Query:  467 GDACLVLTTDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDVSCVAESQDAGSSTTSSTRMVAQDPNDGYQVTEALRVQMESPRRLHEQLEVQRRLQLRIEAQGKYLQSILEKA*KAL 937
            GD+ LVLTTDPKPRLRWT ELH+RFVDAV QLGGPDKATPKTIMR MGVKGLTLYHLKSHLQK+RLGKQ  KE  ++S      A + D   +  SS+ M++++ N+         +QME  RRLHEQLEVQR LQLRIEAQGKY+QSILE+A + L
Sbjct:   23 GDSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEYGDHSTKEGSRASAMDIQRNVASSSGMMSRNMNE---------MQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILERACQTL 170
[Close]
BLAST of DY263267 vs. ExPASy Swiss-Prot
Match: MYBF_ARATH (Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.927e-13
Identity = 36/55 (65.45%), Postives = 41/55 (74.55%), Query Frame = 2 
Query:  497 PKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYR 661
            P PRLRWT ELH  FV AV  LGG  KATPK +++ M VKGLT+ H+KSHLQ YR
Sbjct:   22 PVPRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYR 76
The following BLAST results are available for this feature:
BLAST of DY263267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
APL_ARATH7.278e-4965.61Myb family transcription factor APL OS=Arabidopsis... [more]
MYBF_ARATH4.927e-1365.45Putative Myb family transcription factor At1g14600... [more]
back to top
Properties
Property NameValue
Genbank descriptionIC0AAA11BB08RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263267 ID=DY263267; Name=DY263267; organism=Citrus clementina; type=EST; length=1368bp
CAAATACTTTTCATGTTAAATTTATTAATTTTTACTAAGACAATAAAAAA
ATCGAAGTGCCAACCAGATTTCACAAAAAAAACCCGTACAGAGACAGCCA
CACAGAAAAAGAAGAGGGAGAGAGAGACAGAGACAGAGACATTTCACAGA
ACACATCGCTGTCTCAACCTCTCTGCTTTCAGCTCTACATTGCCGCACAC
CCCTTTTACTCTCTCTGTCTTTCTCCTTCACTCTCTCTTTCTAACCTCAG
CTCAAAGCCAAAGCTGAAGCTGAATCCTTGCTGCTGAAGCTCAAAGCCCT
CTCCTCCTTTAATCTTCTCTCTTCGTTCGCTCACTCGTCTTGATTTCTTT
TTCGAGATACTGCATTCTTGAGTCTTTGATAGATGTACTCGGCGATTCAC
TCGCTGCCACTGGACGGTGGCCACCCCGACTTTCAAGGGGGCCCGCTCGA
CGGCACCAATCTCCCCGGCGACGCCTGCTTGGTCTTAACCACCGATCCCA
AGCCCCGCCTCCGCTGGACCGCTGAGCTTCACGACCGCTTCGTCGATGCT
GTCACCCAGCTCGGTGGCCCCGACAAAGCAACACCCAAGACTATCATGAG
AACGATGGGAGTGAAAGGCCTTACCCTTTATCATCTCAAATCACATCTTC
AGAAGTACCGCTTGGGAAAGCAAGCGTGCAAGGAAACGACAGAGAACTCC
AAGGATGTTTCTTGTGTTGCTGAAAGTCAGGACGCTGGTTCATCAACAAC
ATCGTCAACCAGAATGGTAGCGCAAGATCCAAACGATGGTTACCAGGTTA
CTGAGGCTTTGCGAGTACAGATGGAAAGTCCACGAAGGCTTCATGAGCAG
CTGGAGGTTCAGCGACGGCTCCAGCTCCGAATTGAAGCGCAAGGCAAATA
CCTACAGTCAATACTTGAAAAAGCTTGAAAAGCTCTGAATGATCAGGCCA
TCGTGGCTGCTGGGGCTGAAGCTGCTAGAGAGGACTTTCCAACTTGCCAT
CAAGTTTTCAATGATTGTCAGGGGATGGTCCCTCGGGAAAACTTAAAATG
CATTCCAATCTGACCTGGCGGCCGCTCTGAAAAACAAGAAGGCTTCCATT
AAACCAGCCTCGAACGGGGGACGGGTTCGGTGGAAAGTTGCTTGGCTTTC
ACCCAATAGTCCCGGTGGCCCCAAGGGGGGGCGGGGGTTCAAGGGCGGGT
TGCCCGGGGAAAAAAGAAACAAAAACCCGGGTTTTGGGAAAGGGGAGGGA
CTTTGGGCCTTTTGGGGGGGGAAAAATGGGGGGGGAAAAAAAAAAAAGGG
GGGGGGGGAGTGCCCCCTCTTTTGGGGAAAGAAAAAAACAAAAAAATTGG
TTTTATTTTGGTGTTTTT
back to top