DY263276

Overview
NameDY263276
Unique NameDY263276
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1336
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY263276 vs. ExPASy Swiss-Prot
Match: QRT3_ARATH (Polygalacturonase QRT3 OS=Arabidopsis thaliana GN=QRT3 PE=2 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 1.361e-76
Identity = 157/304 (51.64%), Postives = 189/304 (62.17%), Query Frame = 3 
Query:  156 SGRGDHFHEKVRQMQEFKASFSRRDLXXXXXXXXXXXXXXQVTSGPRVYGVISYGADPTGKSDSTEAILKALSDAFNGPREGSLIEGIANLGGAEIHLEGGNYLISKPLRLPDAGVGNLVIHGGTLRASDDFPTDGYLIDLXXXXXXXXYNYEYITLKDLMFDSNYRGGAVSVINSLRTSIDNCYIAHF-TSNGILVQSGHETYIRNSFLGQHITAGGDPGERTLQARQLT*WGTTMLLRTW*FFGCRRYNVFRSSPHIFRGALAIQGPQDLAGLAFTLSLPGNPKTRVGIPYWDYQEMVAEDP 1064
            SG        + +MQ  KAS  RR+L              Q   GPRVY VISYGADPTGK DST+AILKA+ +AF+GP  G L++GI +LGGA I L+GG+YLIS+PLR P AG GNL+I GGTLRAS+DFP D YLI+L        Y +EYITL+DL+ D NYRGGA++VINSLRTSIDNCYI  F  +NGILV+SGHETYIRNSFLGQHITAGGD GER+     +   G    +     F  R   +     ++  G           G    L LPG  + R+   Y DY  +VAEDP
Sbjct:   31 SGSMSPHDRALAEMQALKASLVRRNLPALVSPPPTPP---QAVPGPRVYQVISYGADPTGKLDSTDAILKAMEEAFDGPNHGVLMQGINDLGGARIDLQGGSYLISRPLRFPSAGAGNLLISGGTLRASNDFPVDRYLIELKDESSKLQYIFEYITLRDLLIDCNYRGGAIAVINSLRTSIDNCYITRFGDTNGILVKSGHETYIRNSFLGQHITAGGDRGERSFSGTAINLMGNDNAVTDTVIFSARIGVMVSGQANLLSGVHCYNKATGFGGTGIYLRLPGLTQNRIVNSYLDYTGIVAEDP 331
The following BLAST results are available for this feature:
BLAST of DY263276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
QRT3_ARATH1.361e-7651.64Polygalacturonase QRT3 OS=Arabidopsis thaliana GN=... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA11BC05RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263276 ID=DY263276; Name=DY263276; organism=Citrus clementina; type=EST; length=1336bp
CTTTTTACGTGAAGGAAGTGAAGAGAAAGAGGGCTTGGAGTTTTAATACA
ATGGCTAGGAAAACCCTAGGTTTACTTTCTTTGATGACTGGCTTGGCCAG
CCTGATCATCGTGCATGCTTACGGCGAATCTGTCCCTGTAACCACTCCTT
TTTCTAGTGGCCGTGGCGACCATTTTCATGAAAAAGTACGCCAAATGCAA
GAGTTTAAGGCCTCCTTTAGTCGTCGTGATTTGGCAGCTGCAGCTACTCC
CGGCTACGCTCCTGCTCCTTCTCCTCAGGTTACGTCCGGGCCACGTGTGT
ACGGGGTGATATCATACGGTGCAGATCCCACGGGGAAATCAGACAGCACG
GAAGCGATTCTGAAAGCACTTTCTGATGCATTTAACGGGCCCAGGGAAGG
GTCTTTGATAGAGGGAATTGCTAATCTCGGTGGTGCAGAGATTCATCTTG
AAGGTGGGAATTACTTGATCAGCAAGCCTCTGCGGTTGCCGGATGCCGGC
GTAGGGAACCTTGTGATTCATGGAGGCACACTACGAGCATCGGATGATTT
TCCAACCGATGGCTATCTGATTGATTTGTCTGCTTCAAAATCTTCGTCAT
CATATAACTATGAGTACATAACGCTAAAAGACCTGATGTTTGATTCAAAC
TACAGGGGAGGGGCAGTTTCGGTCATAAATTCCCTTAGGACTAGCATAGA
CAATTGCTACATTGCACATTTTACCTCCAACGGCATTTTAGTCCAGAGCG
GGCACGAAACCTACATCCGGAACTCGTTCCTCGGGCAGCACATCACCGCC
GGTGGTGATCCGGGTGAGCGGACTTTACAGGCACGGCAATTAACCTAATG
GGGCACGACAATGCTGTTACGGACGTGGTAATTTTTCGGCTGCCGTAGGT
ATAATGTTTTCAGGTCAAGCCCACACATTTTCCGGGGTGCATTGGCTATA
CAAGGCCCACAGGATTTGGCGGGCCTGGCATTTACTTTGAGCTTGCCAGG
TAACCCCAAAACAAGGGTCGGGATTCCTTACTGGGATTACCAAGAAATGG
TTGCTGAAGACCCCCGTGCAGCTTCCCCTTTCCAGCAAGTTTCTTCCCTG
GGGAAGGCTTTCCTTTGGGGGGAAATCTTAAAACGGGGGTCCCCAAAGGG
GGTTAATTTTTGGCAAAAAACCGGTTTTCCGGGCAAAAAAACCGGGGGTT
AAAAAATCTTAAAAATGGGAATAAAATCCCATGGGAGCTTTTTTAAACAA
AAATTATATAAATATTTTTTTTTGTTTTTAAAGAAAAAAACAGTGGTTCA
TTGGGGAAAAAGAAAAACAAAACAGAGGGGGGCAAA
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