DY263284

Overview
NameDY263284
Unique NameDY263284
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1116
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263284 vs. ExPASy Swiss-Prot
Match: DDPS2_ARATH (Dehydrodolichyl diphosphate synthase 2 OS=Arabidopsis thaliana GN=At5g58770 PE=2 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 2.202e-43
Identity = 59/121 (48.76%), Postives = 92/121 (76.03%), Query Frame = 3
Query:  486 VRMLIIFLINF-YWLKVQVEVEFLMKLFEKSIKSELEGFISEGIRISMIGDSSRLPRTLQELVRDAEDRTKNNSNFQLIVAVSYSGKYDVVQACKSIAQKVKDDVIRLDDIDESLIEQELE 845
            +++L +F  +   W++ ++E++FL  LFE+S+K+E +      +RIS+IGDSS+LP++L  ++ + E+ TKNN+  QLIVAV YSGKYDV+QAC+ IA++VKD  I +++IDE LIE+ELE
Sbjct:  122 IQVLTVFAFSTDNWIRPRIEIDFLFSLFERSLKTEFQNLAKNNVRISIIGDSSKLPKSLLRVINEVEEVTKNNTRLQLIVAVGYSGKYDVLQACRGIARRVKDGEIEVEEIDERLIEEELE 242          

HSP 2 Score: 68.5514 bits (166), Expect = 2.202e-43
Identity = 35/62 (56.45%), Postives = 47/62 (75.81%), Query Frame = 2
Query:  845 TSCTDYPFPELLIRTSGELRSSNFLLWQLAYTRVFLRTDTLGLDLGKAEVGRSL*LHFQQRK 1030
            T+CT++P+P+LLIRTSGELR SNFLLWQLAYT +F   + L  D G++    +L + FQQR+
Sbjct:  243 TNCTEFPYPDLLIRTSGELRVSNFLLWQLAYTELFFAQE-LWPDFGRSGFIEAL-MSFQQRQ 302          
BLAST of DY263284 vs. ExPASy Swiss-Prot
Match: DDPS5_ARATH (Dehydrodolichyl diphosphate synthase 5 OS=Arabidopsis thaliana GN=At5g58784 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.343e-32
Identity = 48/107 (44.86%), Postives = 78/107 (72.90%), Query Frame = 3
Query:  522 WLKVQVEVEFLMKLFEKSIKSELEGFISEGIRISMIGDSSRLPRTLQELVRDAEDRTKNNSNFQLIVAVSYSGKYDVVQACKSIAQKVKDDVIRLDDIDESLIEQEL 842
            W + + EV+ LM LFEK + S++    S+ I+IS+IG+ ++LP +L  L+ + E+ TK+     LI+A+ YSG+YD++QACKS+A KVKD +I+++DI+E  +E+EL
Sbjct:  128 WERPEDEVKCLMALFEKYLASDMPYLRSDKIKISVIGNRTKLPESLLGLIEEVEEATKSYEGKNLIIAIDYSGRYDILQACKSLANKVKDGLIQVEDINEKAMEKEL 234          

HSP 2 Score: 58.9214 bits (141), Expect = 2.343e-32
Identity = 32/62 (51.61%), Postives = 42/62 (67.74%), Query Frame = 2
Query:  845 TSCTDYPFPELLIRTSGELRSSNFLLWQLAYTRVFLRTDTLGLDLGKAEVGRSL*LHFQQRK 1030
            T C+++P P+LLIRTSGE R SNF LWQ AYT ++  T  L  D G+AE   +L   +QQR+
Sbjct:  236 TKCSEFPNPDLLIRTSGEQRISNFFLWQSAYTELYFPT-VLWPDFGEAEYLEAL-TWYQQRQ 295          
BLAST of DY263284 vs. ExPASy Swiss-Prot
Match: DDPS4_ARATH (Dehydrodolichyl diphosphate synthase 4 OS=Arabidopsis thaliana GN=At5g58782 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.003e-30
Identity = 43/108 (39.81%), Postives = 79/108 (73.15%), Query Frame = 3
Query:  522 WLKVQVEVEFLMKLFEKSIKSELEGFISEGIRISMIGDSSRLPRTLQELVRDAEDRTKNNSNFQLIVAVSYSGKYDVVQACKSIAQKVKDDVIRLDDIDESLIEQELE 845
            W + ++EV+ LM LF++ +KS+++ F S+ IR+S+IG+ +++P +L   V + E+ TK+     LI+A+ YSG++D++ ACK+I +K +  +IR +D+DE+L E+EL+
Sbjct:  115 WGRHKIEVKCLMYLFQRYLKSKIQFFQSKEIRVSVIGNLAKIPESLLRTVHELEEATKSYKKKHLILAIDYSGRFDILGACKNIVKKSEQGLIREEDVDETLFERELQ 222          

HSP 2 Score: 57.3806 bits (137), Expect = 6.003e-30
Identity = 25/36 (69.44%), Postives = 29/36 (80.56%), Query Frame = 2
Query:  842 RTSCTDYPFPELLIRTSGELRSSNFLLWQLAYTRVF 949
            +T CT++P P+LLIRTSGE R SNF LWQLAYT  F
Sbjct:  222 QTRCTEFPSPDLLIRTSGEQRISNFFLWQLAYTEFF 257          
BLAST of DY263284 vs. ExPASy Swiss-Prot
Match: UPPS_ANAVT (Undecaprenyl pyrophosphate synthetase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=uppS PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 7.840e-30
Identity = 43/110 (39.09%), Postives = 73/110 (66.36%), Query Frame = 3
Query:  522 WLKVQVEVEFLMKLFEKSIKSELEGFISEGIRISMIGDSSRLPRTLQELVRDAEDRTKNNSNFQLIVAVSYSGKYDVVQACKSIAQKVKDDVIRLDDIDESLIEQELEPA 851
            W + Q EVEFLM LF++ ++ EL   + E ++I  +G+ + LPR+LQ  +  + + TKNN   +  VA +Y G+ +++QAC++IAQKV+  +++ D+IDE + E+ L  A
Sbjct:   78 WKRPQEEVEFLMTLFQRVLRQELREMVEENVQIQFVGNLAALPRSLQAEISRSMEATKNNRGIRFSVATNYGGRQEILQACRAIAQKVQQGLLQPDEIDEEVFERHLYTA 187          

HSP 2 Score: 56.9954 bits (136), Expect = 7.840e-30
Identity = 30/54 (55.56%), Postives = 40/54 (74.07%), Query Frame = 2
Query:  869 PELLIRTSGELRSSNFLLWQLAYTRVFLRTDTLGLDLGKAEVGRSL*LHFQQRK 1030
            P+LLIRTSGE+R SNFLLWQ+AY  +++ TDTL  D  + E  R+L   +QQR+
Sbjct:  192 PDLLIRTSGEMRLSNFLLWQMAYGEIYI-TDTLWPDFDRTEFHRAL-CAYQQRE 243          
BLAST of DY263284 vs. ExPASy Swiss-Prot
Match: UPPS1_ANASP (Undecaprenyl pyrophosphate synthetase 1 OS=Anabaena sp. (strain PCC 7120) GN=uppS1 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.254e-29
Identity = 42/110 (38.18%), Postives = 73/110 (66.36%), Query Frame = 3
Query:  522 WLKVQVEVEFLMKLFEKSIKSELEGFISEGIRISMIGDSSRLPRTLQELVRDAEDRTKNNSNFQLIVAVSYSGKYDVVQACKSIAQKVKDDVIRLDDIDESLIEQELEPA 851
            W + Q EVEFLM LF++ ++ EL   + E ++I  +G+ + LPR+LQ  +  + + TKNN   +  VA +Y G+ +++QAC++IAQKV+  +++ D+I+E + E+ L  A
Sbjct:   78 WKRPQEEVEFLMTLFQRVLRQELREMVEENVQIQFVGNLTALPRSLQAEISRSMEETKNNRGIRFSVATNYGGRQEILQACRAIAQKVQQGLLQPDEINEEVFERHLYTA 187          

HSP 2 Score: 56.9954 bits (136), Expect = 2.254e-29
Identity = 30/54 (55.56%), Postives = 40/54 (74.07%), Query Frame = 2
Query:  869 PELLIRTSGELRSSNFLLWQLAYTRVFLRTDTLGLDLGKAEVGRSL*LHFQQRK 1030
            P+LLIRTSGE+R SNFLLWQ+AY  +++ TDTL  D  + E  R+L   +QQR+
Sbjct:  192 PDLLIRTSGEMRLSNFLLWQMAYGEIYI-TDTLWPDFDRTEFHRAL-CAYQQRE 243          
BLAST of DY263284 vs. ExPASy Swiss-Prot
Match: DDPS3_ARATH (Dehydrodolichyl diphosphate synthase 3 OS=Arabidopsis thaliana GN=At5g58780 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.954e-29
Identity = 42/107 (39.25%), Postives = 76/107 (71.03%), Query Frame = 3
Query:  522 WLKVQVEVEFLMKLFEKSIKSELEGFISEGIRISMIGDSSRLPRTLQELVRDAEDRTKNNSNFQLIVAVSYSGKYDVVQACKSIAQKVKDDVIRLDDIDESLIEQEL 842
            W + ++EV+ LM L +  +KS+++ F  E  R+S+IG+ +++P +L   V++ E+ T++     LI+A+ YSG+ D+++ACKSI +K +  +IR +D+DE+LIE+EL
Sbjct:  128 WGRHKIEVKCLMSLIQHYLKSKIQYFQREETRVSVIGNLTKIPESLLRTVQEIEEATRSYKKKHLILAIDYSGRLDILRACKSIVKKSEKGLIREEDVDEALIEREL 234          

HSP 2 Score: 58.9214 bits (141), Expect = 4.954e-29
Identity = 31/62 (50.00%), Postives = 44/62 (70.97%), Query Frame = 2
Query:  845 TSCTDYPFPELLIRTSGELRSSNFLLWQLAYTRVFLRTDTLGLDLGKAEVGRSL*LHFQQRK 1030
            T+CT++P P+LLIRTSGE R SNF LWQLAYT +F  +  L  D  K ++  +L + +Q+R+
Sbjct:  236 TNCTEFPSPDLLIRTSGEQRISNFFLWQLAYTELFF-SPVLWPDFDKDKLLEAL-VSYQRRE 295          
BLAST of DY263284 vs. ExPASy Swiss-Prot
Match: DDPS1_ARATH (Dehydrodolichyl diphosphate synthase 1 OS=Arabidopsis thaliana GN=DPS PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 2.591e-27
Identity = 42/108 (38.89%), Postives = 74/108 (68.52%), Query Frame = 3
Query:  522 WLKVQVEVEFLMKLFEK-SIKSELEGFISEGIRISMIGDSSRLPRTLQELVRDAEDRTKNNSNFQLIVAVSYSGKYDVVQACKSIAQKVKDDVIRLDDIDESLIEQEL 842
            W + ++E++ LM L +    KS ++ F    +R+S+IG+ +++P +L + + + E+ TK   N  LI+AV YSGK+D++ ACKS+ +K +  +IR +D+DE+LIE+EL
Sbjct:  128 WGRDKIEIDNLMSLIQHYRNKSNIKFFHRSEVRVSVIGNKTKIPESLLKEIHEIEEATKGYKNKHLIMAVDYSGKFDIMHACKSLVKKSEKGLIREEDVDEALIEREL 235          

HSP 2 Score: 56.225 bits (134), Expect = 2.591e-27
Identity = 23/35 (65.71%), Postives = 30/35 (85.71%), Query Frame = 2
Query:  845 TSCTDYPFPELLIRTSGELRSSNFLLWQLAYTRVF 949
            T+C+D+P P+L+IRTSGE R SNF LWQLAY+ +F
Sbjct:  237 TNCSDFPSPDLMIRTSGEQRISNFFLWQLAYSELF 271          
BLAST of DY263284 vs. ExPASy Swiss-Prot
Match: UPPS_PROMP (Undecaprenyl pyrophosphate synthetase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=uppS PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.708e-27
Identity = 49/122 (40.16%), Postives = 70/122 (57.38%), Query Frame = 3
Query:  522 WLKVQVEVEFLMKLFEKSIKSELEGFISEGIRISMIGDSSRLPRTLQELVRDAEDRTKNNSNFQLIVAVSYSGKYDVVQACKSIAQKVKDDVIRLDDIDESLIEQEL------EPAVLITHS 869
            W++   EV+FL+ LFEK +K E+     E I+I  IGD S LP +L+ L++ +E  T NN  F L + V+Y G+ ++V+A K IA K     I+  DIDE L   EL      +P +LI  S
Sbjct:   81 WIRPSNEVDFLINLFEKVLKKEISEIHQESIKIKFIGDLSPLPNSLKLLIKSSEALTNNNKKFTLNICVNYGGRQEIVKAAKEIAIKSSSGKIKPSDIDEQLFNSELLTKGSMDPELLIRTS 202          

HSP 2 Score: 52.373 bits (124), Expect = 9.708e-27
Identity = 28/53 (52.83%), Postives = 39/53 (73.58%), Query Frame = 2
Query:  869 PELLIRTSGELRSSNFLLWQLAYTRVFLRTDTLGLDLGKAEVGRSL*LHFQQR 1027
            PELLIRTSGE R SNFLLWQLAY+ +++ TD L  D  ++E  +++ + +Q R
Sbjct:  195 PELLIRTSGEKRISNFLLWQLAYSEIYV-TDVLWPDFTESEFLKAI-IDYQSR 245          
BLAST of DY263284 vs. ExPASy Swiss-Prot
Match: UPPS_THEEB (Undecaprenyl pyrophosphate synthetase OS=Thermosynechococcus elongatus (strain BP-1) GN=uppS PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 8.016e-26
Identity = 43/107 (40.19%), Postives = 68/107 (63.55%), Query Frame = 3
Query:  522 WLKVQVEVEFLMKLFEKSIKSELEGFISEGIRISMIGDSSRLPRTLQELVRDAEDRTKNNSNFQLIVAVSYSGKYDVVQACKSIAQKVKDDVIRLDDIDESLIEQEL 842
            W +   EVEFLM LFE+ ++ EL   ++EG++I  +GD + LP++LQ  +  A   T NN   + +VA +Y G+ +++ AC+SIA +VK  ++   DIDE L E+ L
Sbjct:   80 WGRPLPEVEFLMTLFEQVLRRELGEMVAEGVQIHFVGDLTCLPKSLQAEIERAVAATANNQKIKFVVATNYGGRREIIHACRSIAAQVKAGLLDPADIDEVLFERHL 186          

HSP 2 Score: 51.2174 bits (121), Expect = 8.016e-26
Identity = 28/56 (50.00%), Postives = 38/56 (67.86%), Query Frame = 2
Query:  863 PFPELLIRTSGELRSSNFLLWQLAYTRVFLRTDTLGLDLGKAEVGRSL*LHFQQRK 1030
            P P+LLIRTSGELR SNF LWQ+AY  +++ T TL  D  ++    +L   +QQR+
Sbjct:  192 PDPDLLIRTSGELRISNFFLWQVAYAEIYV-TKTLWPDFDRSAFHEAL-RDYQQRQ 245          
BLAST of DY263284 vs. ExPASy Swiss-Prot
Match: UPPS_SYNY3 (Undecaprenyl pyrophosphate synthetase OS=Synechocystis sp. (strain PCC 6803) GN=uppS PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.119e-24
Identity = 39/107 (36.45%), Postives = 71/107 (66.36%), Query Frame = 3
Query:  522 WLKVQVEVEFLMKLFEKSIKSELEGFISEGIRISMIGDSSRLPRTLQELVRDAEDRTKNNSNFQLIVAVSYSGKYDVVQACKSIAQKVKDDVIRLDDIDESLIEQEL 842
            W +   EVEFLM LFE+ ++ EL+  ++E +RI  +G+ + LPR+LQ+ +  + + TKNN+  +  VA +Y G+ ++V  C++IA++V+   +  + IDE ++E+ L
Sbjct:   78 WGRPLEEVEFLMTLFERVLRRELKEMMAENVRIRFVGNLTSLPRSLQDEIARSMEDTKNNTGIRFTVATNYGGRQEIVHVCQAIAREVQSGKLDPETIDEGVVEKYL 184          

HSP 2 Score: 50.0618 bits (118), Expect = 1.119e-24
Identity = 28/53 (52.83%), Postives = 36/53 (67.92%), Query Frame = 2
Query:  869 PELLIRTSGELRSSNFLLWQLAYTRVFLRTDTLGLDLGKAEVGRSL*LHFQQR 1027
            P+LLIRTSGELR SNFLLWQ+AY  +++ T TL  D  +     +L   +QQR
Sbjct:  192 PDLLIRTSGELRISNFLLWQMAYAEIYV-TSTLWPDFDRQAFHLAL-RDYQQR 242          
The following BLAST results are available for this feature:
BLAST of DY263284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
DDPS2_ARATH2.202e-4348.76Dehydrodolichyl diphosphate synthase 2 OS=Arabidop... [more]
DDPS5_ARATH2.343e-3244.86Dehydrodolichyl diphosphate synthase 5 OS=Arabidop... [more]
DDPS4_ARATH6.003e-3039.81Dehydrodolichyl diphosphate synthase 4 OS=Arabidop... [more]
UPPS_ANAVT7.840e-3039.09Undecaprenyl pyrophosphate synthetase OS=Anabaena ... [more]
UPPS1_ANASP2.254e-2938.18Undecaprenyl pyrophosphate synthetase 1 OS=Anabaen... [more]
DDPS3_ARATH4.954e-2939.25Dehydrodolichyl diphosphate synthase 3 OS=Arabidop... [more]
DDPS1_ARATH2.591e-2738.89Dehydrodolichyl diphosphate synthase 1 OS=Arabidop... [more]
UPPS_PROMP9.708e-2740.16Undecaprenyl pyrophosphate synthetase OS=Prochloro... [more]
UPPS_THEEB8.016e-2640.19Undecaprenyl pyrophosphate synthetase OS=Thermosyn... [more]
UPPS_SYNY31.119e-2436.45Undecaprenyl pyrophosphate synthetase OS=Synechocy... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA11BD01RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263284 ID=DY263284; Name=DY263284; organism=Citrus clementina; type=EST; length=1116bp
ACCACTAGTTAGTTCATCGCTAACTTGTTATCGTGAATTCTCCAGTTCCA
AACACTCTCTTTGCCCCGAAACTCAATCCTTCGCGCTCCCAAACCCGCAT
CACACCTCCGTTTTCTCTTCGCAAGGTTCGAGCAGCAGCGGCGGCGGCGT
TCGAATGAGAGGATTTCAGATTTGTCTCTGGAGGAGGAGGAGTTGCCGGC
GGGACTAAATAGGGAGGCGAACGATTGTTTTTATCACTAGTTGTTGCTTA
ATTTTAAAACCACAGTAGCTAAAGAACGAACGATTGTTTTTATCACCACG
CAATTACACTCAACGACTATGATTTCATTTCATTTCATTTCGCAGCAACT
TAGGATTAAAAGTCACGACACCCCGATACTAGCTGGCTAATTAATTGATC
CGAGTAACGATAAACGTGCAACAGACACAGTTTTGTAACCAAGTGTCAAA
ACAACATCGTTTTGAGGAATTTGATTTTGCCACTTGTTCGCATGCTTATC
ATTTTTCTAATTAATTTTTATTGGTTAAAAGTGCAGGTGGAGGTCGAATT
CTTGATGAAACTGTTCGAAAAATCCATAAAGTCGGAGCTAGAGGGTTTCA
TAAGCGAAGGTATTCGAATATCTATGATTGGGGATTCATCGAGACTCCCA
AGGACTCTCCAGGAACTTGTACGTGATGCAGAGGATAGAACAAAAAATAA
CTCAAATTTCCAACTCATTGTGGCAGTTAGCTACAGCGGCAAATATGATG
TTGTACAGGCTTGCAAAAGTATTGCACAGAAAGTGAAGGACGATGTTATT
CGACTGGACGACATCGATGAAAGCCTGATTGAGCAAGAACTAGAACCAGC
TGTACTGATTACCCATTCCCGGAACTATTGATTAGAACCAGTGGTGAACT
AAGAAGTAGTAACTTCTTACTCTGGCAGTTGGCATACACCAGAGTTTTTC
TTCGTACAGACACCTTGGGCCTGGATTTGGGCAAAGCTGAAGTTGGGAGA
AGCCTTTAACTTCATTTCCAGCAAAGGAAGGAAGGGGCTATGGTAAACAA
AATTTCAAAAGCGGGCAATTGGCTGGGGGTCTTTAATAAAAAATTAGGGC
TGCAGCCTCTAAAGCC
back to top