DY263286

Overview
NameDY263286
Unique NameDY263286
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1341
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY263286 vs. ExPASy Swiss-Prot
Match: RTC2_YEAST (Protein RTC2 OS=Saccharomyces cerevisiae GN=RTC2 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 6.282e-13
Identity = 34/79 (43.04%), Postives = 54/79 (68.35%), Query Frame = 1 
Query:  316 GLSSLVCWGVAEIPQIITNFRTKSSHGVSLLFLLTWVAGDIFNLTGCLLEPATLPTQFYTALLYTISTVVLVLQGVYYD 552
            G  S+ CW V  +PQI  NFR +S+ G+SLLF++ W+ GDIFN+ G +++   LPT    A  YT++ ++L++Q ++YD
Sbjct:   18 GSISICCWIVVFVPQIYENFRRQSAEGLSLLFIVLWLLGDIFNVMGAMMQ-NLLPTMIILAAYYTLADLILLIQCMWYD 95
[Close]
BLAST of DY263286 vs. ExPASy Swiss-Prot
Match: YO092_YEAST (Uncharacterized membrane protein YOL092W OS=Saccharomyces cerevisiae GN=YOL092W PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 5.318e-12
Identity = 34/80 (42.50%), Postives = 53/80 (66.25%), Query Frame = 1 
Query:  316 GLSSLVCWGVAEIPQIITNFRTKSSHGVSLLFLLTWVAGDIFNLTGCLLEPATLPTQFYTALLYTISTVVLVLQGVYYDH 555
            G  S+ CW +  +PQI  NF  KSS G+SLLF++ W+AGD+FNL G +++   L T    A  YT++ ++L+ Q ++YD+
Sbjct:   18 GSISISCWIIVFVPQIYENFYRKSSDGLSLLFVVLWLAGDVFNLMGAVMQ-HLLSTMIILAAYYTVADIILLGQCLWYDN 96
[Close]
BLAST of DY263286 vs. ExPASy Swiss-Prot
Match: PQLC2_MOUSE (PQ-loop repeat-containing protein 2 OS=Mus musculus GN=Pqlc2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.502e-11
Identity = 44/127 (34.65%), Postives = 66/127 (51.97%), Query Frame = 1 
Query:  190 W*GQGMSSINYCVKERKGCVGWIERYFKDCLCNVKDEFSFGFGLSSLVCWGVAEIPQIITNFRT-KSSHGVSLLFLLTWVAGDIFNLTGCLLEPATLPTQFYTALLYTISTVVLVLQGVYYDHIFKR 567
            W   G S+ + C     G V WI   F +C  +  DE S G GL S++C+  +  PQ I   +T      +SL FLL W+ GD  NL G  L    LP Q YTA+ Y ++ ++++   +Y+ + FK+
Sbjct:    3 WRTLGASNFSTCPN---GSVQWIWDVFGECAQDGWDEASVGLGLVSILCFAASTFPQYIKACKTGNMDQALSLWFLLGWIGGDSCNLIGSFLAD-QLPLQTYTAVYYVLADLMMLT--LYFHYKFKK 123
The following BLAST results are available for this feature:
BLAST of DY263286 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RTC2_YEAST6.282e-1343.04Protein RTC2 OS=Saccharomyces cerevisiae GN=RTC2 P... [more]
YO092_YEAST5.318e-1242.50Uncharacterized membrane protein YOL092W OS=Saccha... [more]
PQLC2_MOUSE4.502e-1134.65PQ-loop repeat-containing protein 2 OS=Mus musculu... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA11BD03RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263286 ID=DY263286; Name=DY263286; organism=Citrus clementina; type=EST; length=1341bp
CACAGTGTCTCAACAACACAAACAATCTTTCCGCTGTACAAGTGAAATGC
CCTCTCTGTTTCTTTAATTTTCTTGTTTAAAAATAACCAGAAATATATCT
ACATATAATTAAGAGAACACTTTGTATTAATTCCATCCACCAGATTTTGA
AAGAGAGAGAGTGAGAACAATTAAAGGTGTTGGTGGTAGTGGTGAGGGCA
AGGGATGTCGAGTATAAATTATTGTGTGAAGGAGAGGAAAGGGTGTGTGG
GCTGGATTGAAAGGTATTTCAAAGATTGCCTTTGCAACGTCAAGGATGAA
TTTTCATTTGGATTCGGTCTCAGCAGTCTCGTCTGTTGGGGAGTTGCGGA
AATCCCTCAAATCATAACCAACTTTCGAACCAAGTCCAGCCACGGCGTCT
CGCTCCTCTTCCTCCTCACTTGGGTTGCTGGAGATATTTTTAATTTGACG
GGTTGTCTTCTGGAACCGGCTACGCTGCCTACCCAGTTCTACACGGCTCT
GCTCTACACCATAAGTACTGTAGTGTTAGTGCTGCAAGGTGTATACTACG
ATCATATTTTCAAGAGATTGAAAGGCCGCCACACTAAAGCTACACGAAGG
GAGGAGGAAGAGAAAAAACCTTTGGCACCTAAGTCAGGTGACGCGGCCAT
TCCCATTCCCAAGGCATCAGTAAAATCATCTCCTCGAAGAGAGTATTACT
ACACGTCAGCAAGATCGTTAGCAAGCAGTGGCACTCCTCCATTTCGCACG
TTTCTCAGAGCAGCGCAAAGTGGGCCTTCAGCTTTGGGACTTGACAACGA
TTCCTCGTCGGATGATGAGGCGGCAGCAGCGGCTCCCACGCTTTCATCTT
CTGGGAACCCACCGACTAGCCAGCCCAGGCCCATCCCAAGATCTGCTGGT
TATGGAACGGTTCTTGCTGCATCTGTTTAACTTTCCTTTCCAAATAATGC
ACTGGCCGGAGCTATGGCACCTGGGTTTCATTCAGAACACTTTTAAACCG
AAATACATGGAGCAAAGTGCTTTTGGAAAAGGGCTGGGAATGGTGAAGGG
CACCTTTTAATGGGCCGCCGTTCCCCCCAAAAAGGGTAAAAATTAAAAAA
GGGAGGGGGAAGGGCTCCAACCTCTCCTGTTTCGGTTTGCTTTATCCCCA
AAGTGCTTTTAGTTTTTTAATATTGGTTGGGAAAAACCACGGAAGGGGAA
AATAATAAAAGCGAAAAAGTGCCGGGGGTTGGCGGGAGGTGCCTTTTTTC
TCCCGGTGTGTGTTTTCCCTTTTTTTTTTTTATTTTTGGTGTGCTTATTC
TTCTTTTTTTTAGGGGTTTTTTTTTTTATAAAAAGAAAAAA
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