DY263288

Overview
NameDY263288
Unique NameDY263288
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1171
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263288 vs. ExPASy Swiss-Prot
Match: HSFB3_ARATH (Heat stress transcription factor B-3 OS=Arabidopsis thaliana GN=HSFB3 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 3.454e-49
Identity = 103/186 (55.38%), Postives = 121/186 (65.05%), Query Frame = 3
Query:  306 ARKSTPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRRKA--WANR------------XXXXXXXXXXXESHDEDQRXXXXXXXXXEYNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVAKY 821
            A    PPPFL+KTY ++EDP TD VISWN  GTGFVVWQPAEFARDLLPTLFKH NFSSFVRQLNTYGFRKV T RWEF N+MFRKG+++L+  IRRRK+  W++                        + H EDQ+          Y  L DENK LK EN  LS EL   K+KCK+L++LV +Y
Sbjct:   33 AELQPPPPFLVKTYKVVEDPTTDGVISWNEYGTGFVVWQPAEFARDLLPTLFKHCNFSSFVRQLNTYGFRKVTTIRWEFSNEMFRKGQRELMSNIRRRKSQHWSHNKSNHQVVPTTTMVNQEGHQRIGIDHHHEDQQSSATSSSFV-YTALLDENKCLKNENELLSCELGKTKKKCKQLMELVERY 217          
BLAST of DY263288 vs. ExPASy Swiss-Prot
Match: HSF24_SOLPE (Heat shock factor protein HSF24 OS=Solanum peruvianum GN=HSF24 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.315e-40
Identity = 85/192 (44.27%), Postives = 117/192 (60.94%), Query Frame = 3
Query:  306 ARKSTPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRRK-----------------AWANRXXXXXXXXXXXESHDEDQRXXXXXXXXXEYNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVAKYANM 830
            ++++ P PFLLKTY L++D ATD+VISWN  GT FVVW+ AEFA+DLLP  FKH+NFSSFVRQLNTYGFRK+   +WEF N+ F++G+K+LL  IRRRK                 A  +                ++           ++  L DEN++LKK+N  LSSELV  K++C EL+  +++Y  +
Sbjct:    2 SQRTAPAPFLLKTYQLVDDAATDDVISWNEIGTTFVVWKTAEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANENFKRGQKELLTAIRRRKTVTSTPAGGKSVAAGASASPDNSGDDIGSSSTSSPDSKNPGSVDTPGKLSQFTDLSDENEKLKKDNQMLSSELVQAKKQCNELVAFLSQYVKV 193          
BLAST of DY263288 vs. ExPASy Swiss-Prot
Match: HSFB1_ARATH (Heat stress transcription factor B-1 OS=Arabidopsis thaliana GN=HSFB1 PE=2 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 7.981e-38
Identity = 83/179 (46.37%), Postives = 108/179 (60.34%), Query Frame = 3
Query:  306 ARKSTPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRRKA----WANRXXXXXXXXXXXESHDEDQRXXXXXXXXXEYNT---------LRDENKRLKKENGNLSSELVSMKRKCKELL 803
            A++S P PFL KTY L++D +TD+V+SWN +GT FVVW+ AEFA+DLLP  FKH+NFSSF+RQLNTYGFRK    +WEF N  FR+G +DLL  IRRRK+     A +               +D             N          L  EN++LK+EN NLSSEL + K++  EL+
Sbjct:    7 AQRSVPAPFLSKTYQLVDDHSTDDVVSWNEEGTAFVVWKTAEFAKDLLPQYFKHNNFSSFIRQLNTYGFRKTVPDKWEFANDYFRRGGEDLLTDIRRRKSVIASTAGKCVVVGSPSESNSGGGDDHGSSSTSSPGSSKNPGSVENMVADLSGENEKLKRENNNLSSELAAAKKQRDELV 185          
BLAST of DY263288 vs. ExPASy Swiss-Prot
Match: HFB2C_ORYSJ (Heat stress transcription factor B-2c OS=Oryza sativa subsp. japonica GN=HSFB2C PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.778e-37
Identity = 72/101 (71.29%), Postives = 81/101 (80.20%), Query Frame = 3
Query:  309 RKSTPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRRKAWA 611
            ++S P PFL KTY L+EDPA D+VISWN DG+ FVVW+PAEFARDLLP  FKH+NFSSFVRQLNTYGFRK+   RWEF N  FR+GEK LLC I RRK  A
Sbjct:   32 QRSLPTPFLTKTYQLVEDPAVDDVISWNEDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANDCFRRGEKRLLCDIHRRKVVA 132          
BLAST of DY263288 vs. ExPASy Swiss-Prot
Match: HFB2B_ORYSJ (Heat stress transcription factor B-2b OS=Oryza sativa subsp. japonica GN=HSFB2B PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 8.824e-37
Identity = 68/98 (69.39%), Postives = 81/98 (82.65%), Query Frame = 3
Query:  309 RKSTPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRRK 602
            +++ P PFL KTY L++DPA D+VISWN DG+ FVVW+PAEFARDLLP  FKH+NFSSFVRQLNTYGFRK+   RWEF N  FR+GE+ LLC+I RRK
Sbjct:   42 QRTVPTPFLTKTYQLVDDPAVDDVISWNDDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANDCFRRGERRLLCEIHRRK 139          
BLAST of DY263288 vs. ExPASy Swiss-Prot
Match: HFB2A_ORYSJ (Heat stress transcription factor B-2a OS=Oryza sativa subsp. japonica GN=HSFB2A PE=2 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 8.824e-37
Identity = 84/184 (45.65%), Postives = 100/184 (54.35%), Query Frame = 3
Query:  324 PPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRRKAWA------------------NRXXXXXXXXXXXESHDEDQRXXXXXXXXXEYNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVAKY 821
            PPFL KTY ++EDP+TD  ISWN  GT FVVW+PAEFARDLLP  FKHSNFSSFVRQLNTYGF+KV   RWEF N  FR+GEK LL  I+RRK                     +             S                   L +EN RL++EN  L+ EL   +R C  +  LV++Y
Sbjct:    9 PPFLTKTYAMVEDPSTDETISWNDSGTAFVVWRPAEFARDLLPKHFKHSNFSSFVRQLNTYGFKKVVADRWEFANDCFRRGEKHLLGGIQRRKGSGTGGAGAAPAGGIPTAIPISSPPTSSGGEPAVSSSPPRGAAGIAAGVSGAVAELEEENARLRRENARLARELARARRVCDGVRRLVSRY 192          
BLAST of DY263288 vs. ExPASy Swiss-Prot
Match: HSFB4_ARATH (Heat stress transcription factor B-4 OS=Arabidopsis thaliana GN=HSFB4 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.152e-36
Identity = 68/103 (66.02%), Postives = 82/103 (79.61%), Query Frame = 3
Query:  294 LLEYARKSTPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRRK 602
            ++E   K+ P PFL KTY L++DPATD+V+SW  D T FVVW+P EFARDLLP  FKH+NFSSFVRQLNTYGFRK+   RWEF N+ F++GEK LLC+I RRK
Sbjct:   23 MVEGQGKAVPAPFLTKTYQLVDDPATDHVVSWGDDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKRGEKHLLCEIHRRK 125          
BLAST of DY263288 vs. ExPASy Swiss-Prot
Match: HFB4A_ORYSJ (Putative heat stress transcription factor B-4a OS=Oryza sativa subsp. japonica GN=HSFB4A PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 2.839e-35
Identity = 70/102 (68.63%), Postives = 79/102 (77.45%), Query Frame = 3
Query:  321 PPPFLLKTYMLIEDPATDNVISWNGDGTG-----FVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRRKAWA 611
            P PFL KTY L++DPATD+V+SW  D  G     FVVW+P EFARD+LP  FKHSNFSSFVRQLNTYGFRKV   RWEF N+ FRKGEK LLC+I RRK+ A
Sbjct:   23 PAPFLTKTYQLVDDPATDHVVSWEDDDGGESASSFVVWRPPEFARDILPNYFKHSNFSSFVRQLNTYGFRKVVPERWEFANEFFRKGEKQLLCEIHRRKSAA 124          
BLAST of DY263288 vs. ExPASy Swiss-Prot
Match: HFB4B_ORYSJ (Heat stress transcription factor B-4b OS=Oryza sativa subsp. japonica GN=HSFB4B PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 6.324e-35
Identity = 66/100 (66.00%), Postives = 77/100 (77.00%), Query Frame = 3
Query:  306 ARKSTPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRRKA 605
            A K  P PFL KTY L++DP TD+++SW  D T FVVW+P EFARDLLP  FKH+NFSSFVRQLNTYGFRK+   RWEF N+ FRKG K LL +I RRK+
Sbjct:   27 AGKPVPAPFLTKTYQLVDDPCTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADRWEFANEFFRKGAKHLLAEIHRRKS 126          
BLAST of DY263288 vs. ExPASy Swiss-Prot
Match: HFB2B_ARATH (Heat stress transcription factor B-2b OS=Arabidopsis thaliana GN=HSFB2B PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 6.324e-35
Identity = 68/99 (68.69%), Postives = 79/99 (79.80%), Query Frame = 3
Query:  306 ARKSTPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRRK 602
            +++S P PFL KTY L+EDP  D +ISWN DGT F+VW+PAEFARDLLP  FKH+NFSSFVRQLNTYGFRKV   RWEF N  F++GEK LL  I+RRK
Sbjct:   52 SQRSIPTPFLTKTYQLVEDPVYDELISWNEDGTTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNDCFKRGEKILLRDIQRRK 150          
The following BLAST results are available for this feature:
BLAST of DY263288 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
HSFB3_ARATH3.454e-4955.38Heat stress transcription factor B-3 OS=Arabidopsi... [more]
HSF24_SOLPE1.315e-4044.27Heat shock factor protein HSF24 OS=Solanum peruvia... [more]
HSFB1_ARATH7.981e-3846.37Heat stress transcription factor B-1 OS=Arabidopsi... [more]
HFB2C_ORYSJ1.778e-3771.29Heat stress transcription factor B-2c OS=Oryza sat... [more]
HFB2B_ORYSJ8.824e-3769.39Heat stress transcription factor B-2b OS=Oryza sat... [more]
HFB2A_ORYSJ8.824e-3745.65Heat stress transcription factor B-2a OS=Oryza sat... [more]
HSFB4_ARATH1.152e-3666.02Heat stress transcription factor B-4 OS=Arabidopsi... [more]
HFB4A_ORYSJ2.839e-3568.63Putative heat stress transcription factor B-4a OS=... [more]
HFB4B_ORYSJ6.324e-3566.00Heat stress transcription factor B-4b OS=Oryza sat... [more]
HFB2B_ARATH6.324e-3568.69Heat stress transcription factor B-2b OS=Arabidops... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA11BD05RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263288 ID=DY263288; Name=DY263288; organism=Citrus clementina; type=EST; length=1171bp
AACGATTTCTTTAGCAATTAAATAGCATTGCAATTGAATTCTCATGAATT
GCCCTCGTGGAGTCGTATTGGGTTTCTATTGTTGGGGCTGGGAGTTCTTA
ACTGCAATTCTCATCTTCTCCAATATCCTTCTTCATCTTTAGATTAATCT
TCTTCTCTTTTAGCTAATTTCCCTCTTCAATATTTCCCTTCTTTTTTTTT
TTTTTTTTGGTCTTTTTAATTGTTTGCGATATTTGAAATATGGAGGCTAC
AAATAATATTACAATAAGCAGCTGCTGTGATGACAATAAGGGCCTACTGG
AATATGCCAGAAAATCAACACCCCCACCATTTCTGTTGAAGACTTACATG
CTAATAGAGGATCCGGCCACCGATAACGTCATCTCGTGGAACGGCGACGG
CACCGGCTTCGTTGTCTGGCAGCCGGCCGAGTTTGCCCGGGATCTACTGC
CGACACTCTTCAAGCACAGCAACTTCTCTAGCTTTGTTCGCCAGCTCAAT
ACTTACGGATTTCGAAAAGTAGCAACAAGCAGGTGGGAATTTTGCAACCA
AATGTTTAGAAAGGGGGAGAAAGATCTTTTATGCAAGATACGTCGAAGAA
AAGCATGGGCAAACAGGCAGCAAGCAGCAACGGCAGCAGCAACACAACAA
GAATCTCATGATGAAGATCAAAGGTCGTCGTCGTCGACGTCATCGTTGTC
GGAGTACAACACCCTAAGGGATGAGAATAAGCGTTTGAAGAAGGAGAATG
GGAACTTAAGTTCGGAGCTTGTAAGCATGAAAAGGAAGTGCAAGGAGTTG
CTTGATTTAGTGGCTAAGTACGCAAATATGGATAATGATGATGATGATGA
AGATGATGATGGGCATGAGATTAATAATAACCAAAAGGGCCCCATAATAG
TGAAGTTGTTTGGAGTTAGATTTAAGTTTATGAAGGAAAAAGGGAAAGAA
GAAAAAGAGAAAAAGCGCTGAAATAACTGTCAAATGCTAAATTTTACTAT
CTCATCCTGCAATAATGATACCCTATATTAAGGGAAACATTTGGAAGGCT
TGAAAGTACTTGAATGAAAAAATTAAATACCTTAAAAATACAAAAGGAGG
TAAATTTTTTTTAAAAAAAAATTCAATTTATTTTAACCTTTTTAAAGGGA
AATTAAAAAAATTTAAACCTT
back to top