DY263289

Overview
NameDY263289
Unique NameDY263289
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1334
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY263289 vs. ExPASy Swiss-Prot
Match: Y3720_ARATH (UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.094e-25
Identity = 71/210 (33.81%), Postives = 117/210 (55.71%), Query Frame = 1 
Query:  133 IFKVPDVLRKLNEKAYEPKMLAIGPYHHGKEELSTFEVHKTRYLRELLDRTSKPLPDYVIAMRA---MEERAKNCYGGSLSLETDKFVLMMLLDGCFIVEVIRKFALTRLRGDDDPIFKLSWMLPSIARDMILLENQLPFFVLWKLFTITKMPNNSNDDNFLLMILRFFNGILPGKGCXXXXXXXXXXXXINEVKHLVHLIHDNWLPSSA 753
            IF+VP+    LN KAY+PK+++IGPYH+G++ L   + HK R L+  LD   K   +  + ++A   +E++ +  Y   L    D  + MM+LDGCFI+ V    +   +   +DPIF + W+L SI  D++LLENQ+PFFVL  L+  +K+  +S+ +    +   FF   +  +G               + KHL+ LI + +LP+++
Sbjct:   48 IFRVPESFVALNPKAYKPKVVSIGPYHYGEKHLQMIQQHKPRLLQLFLDEAKKKDVEENVLVKAVVDLEDKIRKSYSEELKTGHD-LMFMMVLDGCFILMVFLIMS-GNIELSEDPIFSIPWLLSSIQSDLLLLENQVPFFVLQTLYVGSKIGVSSDLNR---IAFHFFKNPIDKEGSYWEKHRNY------KAKHLLDLIRETFLPNTS 246
[Close]
BLAST of DY263289 vs. ExPASy Swiss-Prot
Match: Y3264_ARATH (Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana GN=At3g02645 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 7.608e-11
Identity = 44/165 (26.67%), Postives = 85/165 (51.52%), Query Frame = 1 
Query:  130 NIFKVPDVLRKLNEKAYEPKMLAIGPYHHGKEELSTFEVHKTRYLRELLDR-TSKPLPDYVIAMRAMEERAKNCYGGSLSLETDKFVLMMLLDGCFIVEVIRKFALTRLRGDDDPIFKLSWMLPSIARDMILLENQLPFFVLWKLFTITKMPNNSNDDNFLLMIL 621
            +IF VP  L   +  +Y P  ++IGPYH  K EL   E +K    R++ ++  S    D V  +++ME + + CY   +    +  + +M +D  F++E ++ ++  ++    + +         I RD++++ENQ+P FVL K     ++ +  + D+ LL +L
Sbjct:   44 SIFNVPKALMCSHPDSYTPHRVSIGPYHCLKPELHEMERYKLMIARKIRNQYNSFRFHDLVEKLQSMEIKIRACYHKYIGFNGETLLWIMAVDSSFLIEFLKIYSFRKVETLINRVGH-----NEILRDIMMIENQIPLFVLRKTLEF-QLESTESADDLLLSVL 202
The following BLAST results are available for this feature:
BLAST of DY263289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y3720_ARATH1.094e-2533.81UPF0481 protein At3g47200 OS=Arabidopsis thaliana ... [more]
Y3264_ARATH7.608e-1126.67Putative UPF0481 protein At3g02645 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA11BD06RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263289 ID=DY263289; Name=DY263289; organism=Citrus clementina; type=EST; length=1334bp
ACTATTTGAGCAAGGCCGGGCAGGCAGCCTTTAACAAATCAAGGCTTGGC
AAGTCCATCAGCTGACAGAGTACTTGATCTTGTTAAGGAAAAGCTTGATG
GTCTAACTGCTACACCATCTGATCGGTTCAACATTTTTAAGGTGCCTGAT
GTACTGCGTAAGTTAAATGAAAAGGCTTATGAACCAAAAATGCTAGCAAT
TGGTCCTTATCATCACGGTAAAGAAGAATTATCGACCTTTGAGGTGCACA
AAACACGCTATCTCAGAGAACTTCTAGACCGTACGAGCAAGCCTTTGCCA
GACTATGTCATAGCCATGAGGGCAATGGAAGAAAGAGCTAAAAATTGTTA
TGGAGGGTCCCTAAGTTTAGAGACAGATAAGTTTGTGCTAATGATGCTTC
TCGATGGTTGTTTTATCGTCGAGGTTATTCGTAAGTTTGCATTGACACGC
TTGAGAGGAGATGATGACCCAATTTTTAAACTGAGTTGGATGTTACCTTC
CATAGCACGAGATATGATTTTGCTTGAGAATCAACTTCCATTTTTTGTTC
TCTGGAAGTTGTTTACCATTACTAAGATGCCTAATAATTCAAATGATGAT
AACTTTCTTCTCATGATCCTTCGTTTTTTCAATGGCATATTACCAGGAAA
GGGTTGTCGAAGGGATGATGTTTATCGAGATAAAGATTATCGCATAAATG
AAGTCAAACATCTAGTCCATTTGATACACGATAACTGGCTTCCATCATCT
GCAGGCATCAATGCATTTCGGAATAATGGCAAAAATAATAGTGACTGGAG
ATTCATTTGTTCTGCCATCGGCATTCAAGAGGCTGGAGTCCAGTTCGAGA
TGTTTGAGGTCCATAGGATGATTCCTTGTTCGATATTAATTCGAAAATGG
GGTAATGAAGATCCCATCCCTGGAAATACTGATGCTACAGAAACTATTTT
TCAAAATCTCATTACATTCCAGCAATGTTCCCAAAATTAAATCCAAAACA
TGGAATAAATTATGTTGAAATGTTGGGCCTGCCTCCTCACTTCCTTAAAG
GAAGCTGAAATTACTTCCTCTTCCGGGAAAAATTGAAAAATTTTTAGGAA
AAGAAGAAAGTGAATTTTAACCTTAATGCAAAAGCTTTGGGGGAGGGGGG
TTGCTCCCGGAAAACCATTTTCTTTTCCGGGGGAGGGTATTTTAACAAAA
GGAAAATTCCTCTCCCCACCGGGGGCCCCGCTTAAAAAGGGGGGGAAGGG
CGCAAATTTTTTAGAGGAAAAAAATATTTTTTTTCACCCCCCCCTCCGGG
GGGGGGAAAAAACACTTTTCCCCCTTCTTTTTTT
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