DY263310

Overview
NameDY263310
Unique NameDY263310
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1351
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263310 vs. ExPASy Swiss-Prot
Match: S47A1_HUMAN (Multidrug and toxin extrusion protein 1 OS=Homo sapiens GN=SLC47A1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 6.339e-13
Identity = 73/298 (24.50%), Postives = 106/298 (35.57%), Query Frame = 1
Query:  136 LSELKEQQR----LALPLVVMNLTWFAKLTITTAFXXXXXXXXXXXXXXXFTFANVTGFSVLNGLCGAMDPICGQAYGAKNFRXXXXXXXXXXXXXXXATVPITFLWLNVGKILIHFGQQEDISAVSKRYXXXXXXXXXXXXXXXXXXXXXXXQGITLPIMFTSALSLAFHVPVNILLVKAR--GIEGIAMAIWISDXXXXXXXXXXXXXTECYXXXXXXXXXXXXXQGISDWLRLLKLCGPCCLTTCLEWWCYEILVLLSGRLANGKQAVGVIVNVLNFDCLLYSVMLSLATCTSTR 1011
            LS  +E+ R    LA P  ++ L  F    I++ F                   NVTG SV  GL  A D +  Q YG++N +                  P   L+LN   IL+ F Q  D+S +++ Y                       QGI LP + T   +   +   N L +     G+ G A+A  IS               + +             + + DW   L+L  P  L  C+EWW YE+   LSG L  G   +G    V     ++Y V    +   S R
Sbjct:   28 LSAFREELRALLVLAGPAFLVQLMVFLISFISSVFCGHLGKLELDAVTLAIAVINVTGVSVGFGLSSACDTLISQTYGSQNLKHVGVILQRSALVLLLCCFPCWALFLNTQHILLLFRQDPDVSRLTQTYVTIFIPALPATFLYMLQVKYLLNQGIVLPQIVTGVAANLVNALANYLFLHQLHLGVIGSALANLISQYTLALLLFLYILGKKLHQATWGGWSL----ECLQDWASFLRLAIPSMLMLCMEWWAYEVGSFLSGIL--GMVELGAQSIVYELAIIVYMVPAGFSVAASVR 319          
BLAST of DY263310 vs. ExPASy Swiss-Prot
Match: S47A1_RAT (Multidrug and toxin extrusion protein 1 OS=Rattus norvegicus GN=Slc47a1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.844e-12
Identity = 63/258 (24.42%), Postives = 93/258 (36.05%), Query Frame = 1
Query:  142 ELKEQQRLALPLVVMNLTWFAKLTITTAFXXXXXXXXXXXXXXXFTFANVTGFSVLNGLCGAMDPICGQAYGAKNFRXXXXXXXXXXXXXXXATVPITFLWLNVGKILIHFGQQEDISAVSKRYXXXXXXXXXXXXXXXXXXXXXXXQGITLPIMFTSALSLAFHVPVNILLVKAR--GIEGIAMAIWISDXXXXXXXXXXXXXTECYXXXXXXXXXXXXXQGISDWLRLLKLCGPCCLTTCLEWWCYEILVLLSGRL 909
            EL+    LA P  +  L  F    I++ F                   NVTG SV +GL  A D +  Q YG++N +                  P   L++N  +IL+ F Q  D+S +++ Y                       QGI LP + T   +   +   N L +     G+ G A+A  IS               + +             + + DW   L+L  P  L  C+EWW YE+   LSG L
Sbjct:   33 ELRALLVLAGPAFLAQLMMFLISFISSVFCGHLGKLELDAVTLAIAVINVTGISVGHGLSSACDTLISQTYGSQNLKHVGVILQRGTLILLLCCFPCWALFINTEQILLLFRQDPDVSRLTQTYVMVFIPALPAAFLYTLQVKYLLNQGIVLPQVITGIAANLVNALANYLFLHQLHLGVMGSALANTISQFALAIFLFLYILWRKLHHATWGGWSW----ECLQDWASFLQLAIPSMLMLCIEWWAYEVGSFLSGIL 286          
BLAST of DY263310 vs. ExPASy Swiss-Prot
Match: S47A1_MOUSE (Multidrug and toxin extrusion protein 1 OS=Mus musculus GN=Slc47a1 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.409e-12
Identity = 63/260 (24.23%), Postives = 93/260 (35.77%), Query Frame = 1
Query:  136 LSELKEQQRLALPLVVMNLTWFAKLTITTAFXXXXXXXXXXXXXXXFTFANVTGFSVLNGLCGAMDPICGQAYGAKNFRXXXXXXXXXXXXXXXATVPITFLWLNVGKILIHFGQQEDISAVSKRYXXXXXXXXXXXXXXXXXXXXXXXQGITLPIMFTSALSLAFHVPVNILLVKAR--GIEGIAMAIWISDXXXXXXXXXXXXXTECYXXXXXXXXXXXXXQGISDWLRLLKLCGPCCLTTCLEWWCYEILVLLSGRL 909
            L EL+    LA P  +  L  F    I++ F                   NVTG SV +GL  A D +  Q YG++N +                  P   L++N  +IL+ F Q  D+S +++ Y                       QGI LP + T   +   +   N + +     G+ G A+A  IS                 +             + + DW   L+L  P  L  C+EWW YE+   LSG L
Sbjct:   32 LEELRALLVLAGPAFLAQLMMFLISFISSVFCGHLGKLELDAVTLAIAVINVTGISVGHGLSSACDTLISQTYGSQNLKHVGVILQRGTLILLLCCFPCWALFINTEQILLLFRQDPDVSRLTQTYVMIFIPALPAAFLYTLQVKYLLNQGIVLPQIMTGIAANLVNALANYVFLYHLHLGVMGSALANTISQFALAIFLFLYILWRRLHQATWGGWSW----ECLQDWASFLRLAIPSMLMLCIEWWAYEVGSFLSGIL 287          
BLAST of DY263310 vs. ExPASy Swiss-Prot
Match: S47A1_RABIT (Multidrug and toxin extrusion protein 1 OS=Oryctolagus cuniculus GN=SLC47A1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.146e-12
Identity = 68/298 (22.82%), Postives = 106/298 (35.57%), Query Frame = 1
Query:  136 LSELKEQQR----LALPLVVMNLTWFAKLTITTAFXXXXXXXXXXXXXXXFTFANVTGFSVLNGLCGAMDPICGQAYGAKNFRXXXXXXXXXXXXXXXATVPITFLWLNVGKILIHFGQQEDISAVSKRYXXXXXXXXXXXXXXXXXXXXXXXQGITLPIMFTSALSLAFHVPVNILLVKAR--GIEGIAMAIWISDXXXXXXXXXXXXXTECYXXXXXXXXXXXXXQGISDWLRLLKLCGPCCLTTCLEWWCYEILVLLSGRLANGKQAVGVIVNVLNFDCLLYSVMLSLATCTSTR 1011
            LS+ +E+ R    LA P  +  L  F    +++ F                   NV G SV  GL  A D +  Q YG++N +                 +P   L+LN   IL+ F Q   +S +++ Y                       QGI LP + T   +   +   N L V     G+ G A+A  ++              ++ Y             + + DW    +L  P  L  C+EWW YEI   LSG L  G   +G          ++Y + + L+   + R
Sbjct:   27 LSDFREELRALLVLACPAFLAQLMVFLISFVSSVFCGHLSKLELNAVTLAIAVINVMGVSVGFGLSSACDTLISQTYGSRNLKHVGVILQRGSLILLLCCLPCWALFLNTQHILLLFRQDPAVSRLTQTYVTIFIPALPATFLYTLQVKYLLNQGIVLPQVVTGVAANLVNALANYLFVYQLHLGVMGSALANTVAQFTLALLLFLYILRSKVYQATWGGWSL----ECLQDWASFFRLAIPSMLMLCMEWWAYEIGSFLSGIL--GMVELGAQSVTYELAVIVYMIPMGLSVAVNVR 318          
BLAST of DY263310 vs. ExPASy Swiss-Prot
Match: S47A1_PONAB (Multidrug and toxin extrusion protein 1 OS=Pongo abelii GN=SLC47A1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.146e-12
Identity = 73/298 (24.50%), Postives = 104/298 (34.90%), Query Frame = 1
Query:  136 LSELKEQQR----LALPLVVMNLTWFAKLTITTAFXXXXXXXXXXXXXXXFTFANVTGFSVLNGLCGAMDPICGQAYGAKNFRXXXXXXXXXXXXXXXATVPITFLWLNVGKILIHFGQQEDISAVSKRYXXXXXXXXXXXXXXXXXXXXXXXQGITLPIMFTSALSLAFHVPVNILLVKAR--GIEGIAMAIWISDXXXXXXXXXXXXXTECYXXXXXXXXXXXXXQGISDWLRLLKLCGPCCLTTCLEWWCYEILVLLSGRLANGKQAVGVIVNVLNFDCLLYSVMLSLATCTSTR 1011
            LS  +E+ R    LA P  ++ L  F    I++ F                   NVTG SV  GL  A D +  Q YG++N +                  P   L+LN   IL+ F Q  D+S +++ Y                       QGI LP + T   +   +   N L +     G  G A+A  IS               + +             + + DW   L L  P  L  C+EWW YE+   LSG L  G   +G    V     ++Y V    +   S R
Sbjct:   28 LSAFREELRALLVLAGPAFLVQLMVFLISFISSVFCGHLGKLELDAVTLAIAVINVTGVSVGFGLSSACDTLISQTYGSQNLKHVGVILQRSALILLLCCFPCWALFLNTQHILLLFRQDPDVSRLTQTYVTIFIPALPATFLYMLQVKYLLNQGIVLPQIVTGVAANLVNALANYLFLHQLHLGAIGSALANLISQYTLALLLFFYILGKKLHQATWGGWSL----ECLQDWASFLHLAVPSMLMLCMEWWAYEVGSFLSGIL--GMVELGAQSIVYELAIIVYMVPAGFSVAASVR 319          
The following BLAST results are available for this feature:
BLAST of DY263310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
S47A1_HUMAN6.339e-1324.50Multidrug and toxin extrusion protein 1 OS=Homo sa... [more]
S47A1_RAT1.844e-1224.42Multidrug and toxin extrusion protein 1 OS=Rattus ... [more]
S47A1_MOUSE2.409e-1224.23Multidrug and toxin extrusion protein 1 OS=Mus mus... [more]
S47A1_RABIT3.146e-1222.82Multidrug and toxin extrusion protein 1 OS=Oryctol... [more]
S47A1_PONAB3.146e-1224.50Multidrug and toxin extrusion protein 1 OS=Pongo a... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA11BF05RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263310 ID=DY263310; Name=DY263310; organism=Citrus clementina; type=EST; length=1351bp
CACTGCTCAAAAACAACAATGCCTTCAGCAACGTCAAGATTTGAACAGAA
CCCAATTGAGAAAATCTCTAATAATCATTCACCTTCACCTCGAAATCTCA
CTCGAAGATGCGGAATGAACATCATGCACACAACGCTTTCAGAGCTAAAA
GAACAGCAACGATTAGCTCTACCACTTGTGGTGATGAATTTAACTTGGTT
TGCAAAGTTAACCATCACAACAGCGTTTCTAGGACGCCTCGGGGAGCTGC
ACTTGGCCGGTGGGGCTCTTGCTTTCACCTTTGCCAACGTCACGGGCTTC
TCTGTTTTGAATGGACTCTGTGGTGCCATGGACCCGATTTGCGGTCAAGC
ATATGGTGCTAAAAATTTTAGGCTGCTCCACAAGACCCTTCTCATGGCAA
TTTTATTGCTACTGCTAGCAACGGTGCCTATTACTTTCTTGTGGCTTAAT
GTTGGCAAGATTCTCATCCATTTTGGCCAGCAAGAGGACATTTCAGCTGT
CTCGAAGAGATATCTTTTCTATCTCCTTCCTAGTTTACTAGTCACTTCGC
TTCTTTCTCCCCTCAAATCGTACTTGAGCTCGCAAGGCATAACGCTTCCA
ATAATGTTTACCTCAGCACTATCACTAGCGTTTCACGTACCCGTCAACAT
CCTGCTAGTGAAAGCCAGGGGAATAGAAGGAATTGCTATGGCAATATGGA
TAAGTGATCTTTTAGTTGTGATCTTACTTGCTTTGTATTTGTTGGTGACG
GAGTGTTATGGCAAGGAGGGGAAGTGGAAAGAAGGAGGGTGGTGGGAGCA
AGGCATTTCTGACTGGCTTAGATTGCTCAAACTTTGCGGGCCCTGTTGCT
TGACGACTTGCCTTGAATGGTGGTGCTACGAGATCCTGGTCTTGCTGTCA
GGGCGGTTAGCCAATGGCAAACAGGCTGTCGGAGTAATTGTCAATGTGCT
CAACTTCGACTGTTTGCTCTACTCTGTCATGCTATCCCTGGCAACGTGTA
CGTCCACCCGGGGTGTCTAATGAGCTCGGGCCCAATCGACCTAAACTGGC
TTACCGATCAGCCTAAGTATTCTCTAGGGGTGGGCCCTCGTTTTCAGGTT
TGCTCGGAACCCTTGAAAAGGGTAGGAACCCCAAAGGCTTTGGGGGGGCC
TTTTGTTCCGCCCATGGAAAGGGGAAATAATAAGGGGGGGGGGAAAGAAA
GGCCTTTGTGGTGTGGAAGGGGGTTGTGAATGGAAAGCCCCGGAAAATTT
TTCCCTTTTAACCGCTTTTTGGGGGGGAGGAAAAAGTCTTGCGGGGGGGA
AAACAAGGGGGGGGGCGGCGCGGGGGGGGGGGGGGGTCGGATATTTCCCC
C
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