DY263324
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY263324 vs. ExPASy Swiss-Prot
Match: HNRPD_HUMAN (Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens GN=HNRNPD PE=1 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 7.910e-21 Identity = 53/165 (32.12%), Postives = 87/165 (52.73%), Query Frame = 2 Query: 350 ETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGAGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 844 E A + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK ++ K + + K+N ++ + A T VK KI+V + D +EK+R +F FGE+E+ + D T K RGF +K E +K +E+ Sbjct: 88 EAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
BLAST of DY263324 vs. ExPASy Swiss-Prot
Match: HNRPD_MOUSE (Heterogeneous nuclear ribonucleoprotein D0 OS=Mus musculus GN=Hnrnpd PE=1 SV=2) HSP 1 Score: 101.679 bits (252), Expect = 1.033e-20 Identity = 53/165 (32.12%), Postives = 87/165 (52.73%), Query Frame = 2 Query: 350 ETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGAGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 844 E A + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK ++ K + + K+N ++ + A T VK KI+V + D +EK+R +F FGE+E+ + D T K RGF +K E +K +E+ Sbjct: 88 EAAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
BLAST of DY263324 vs. ExPASy Swiss-Prot
Match: HNRPD_RAT (Heterogeneous nuclear ribonucleoprotein D0 OS=Rattus norvegicus GN=Hnrnpd PE=2 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 1.762e-20 Identity = 52/165 (31.52%), Postives = 87/165 (52.73%), Query Frame = 2 Query: 350 ETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGAGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 844 E A + K+F+ GL WDTT++ L F G++ +C L +D +TG+++GF F++FK ++ K + + K+N ++ + A T VK KI+V + D +EK+R +F FGE+E+ + D T K RGF +K E +K +E+ Sbjct: 86 EAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 240
BLAST of DY263324 vs. ExPASy Swiss-Prot
Match: HNDLB_XENLA (Heterogeneous nuclear ribonucleoprotein D-like-B OS=Xenopus laevis GN=hnrpdl-B PE=2 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 8.185e-18 Identity = 57/220 (25.91%), Postives = 102/220 (46.36%), Query Frame = 2 Query: 305 TAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGAGVKEQGAAAQGE---RKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE----------------EPQKMFEGHQLQCQKAAEGKNR 907 T +T LL H D + + K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+ + K++ ++ ++ A QG+ +K++V + + +E+++ +F FGEIE + D T + RGF Y E +K LE +P++++ Q + QK G R Sbjct: 10 TLVSTLSRLLRRHKESNPDFFLIRSKMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLETKEHKLDGKLID-------------PKRAKALQGKEPPKKVFVGGLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTDEEPVQKLLESRFHQIGTGKCEIKAAQPKEVYRQQQQKQQKGGRGGTR 216
BLAST of DY263324 vs. ExPASy Swiss-Prot
Match: YHKF_SCHPO (Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe GN=SPBC660.15 PE=2 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 2.382e-17 Identity = 50/184 (27.17%), Postives = 91/184 (49.46%), Query Frame = 2 Query: 338 DHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGAGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 889 D+ ET+ + K+F+ GL W+TT +SL F GE+ +C ++ D TG+++GF F+ FK K V + + + ++ ++ + P A +E+ + K++V VP D +E+ R FF +FG + + D TG+ RGF Y+ + +P G ++ ++A Sbjct: 150 DNAEETSPFNREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPK-CVNEVMSKEHHLDGKI-------IDPKRAIPREE---QEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRA 322
BLAST of DY263324 vs. ExPASy Swiss-Prot
Match: ROAA_MOUSE (Heterogeneous nuclear ribonucleoprotein A/B OS=Mus musculus GN=Hnrnpab PE=1 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 5.306e-17 Identity = 50/170 (29.41%), Postives = 87/170 (51.18%), Query Frame = 2 Query: 380 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGAGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 889 K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L + +++ R+ + P A ++ +KI+V + + +EK+R +F +FGEIE + D K RGF +K + +K LE+ G + + + A Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRV-------IDPKKAMAMKKDPV----KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKVA 234
BLAST of DY263324 vs. ExPASy Swiss-Prot
Match: HNRDL_RAT (Heterogeneous nuclear ribonucleoprotein D-like OS=Rattus norvegicus GN=Hnrpdl PE=2 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 6.929e-17 Identity = 47/165 (28.48%), Postives = 84/165 (50.91%), Query Frame = 2 Query: 347 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGAGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 841 L+ + S K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+ + K++ ++ + P A + + +K++V + D +E+++ +F FGEIE + D T + RGF Y E +K LE Sbjct: 41 LDPSSFPTSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKL-------IDPKRAKALK---GKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 195
BLAST of DY263324 vs. ExPASy Swiss-Prot
Match: RA1L2_HUMAN (Heterogeneous nuclear ribonucleoprotein A1-like protein 2 OS=Homo sapiens GN=HNRNPA1L2 PE=2 SV=2) HSP 1 Score: 88.1965 bits (217), Expect = 1.182e-16 Identity = 51/171 (29.82%), Postives = 87/171 (50.88%), Query Frame = 2 Query: 377 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGAGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 889 RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+ KV+ R+ + A ++ A +KI+V + D E+ LR +FE++G+IE I D +GK RGFA + + K + + +GH + +KA Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNTTPHKVDGRVVEPKRA----VSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKA 180
BLAST of DY263324 vs. ExPASy Swiss-Prot
Match: MSI1H_RAT (RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus GN=Msi1 PE=2 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 1.182e-16 Identity = 46/170 (27.06%), Postives = 87/170 (51.18%), Query Frame = 2 Query: 380 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGAGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 889 K+F+ GL W TTQE L FG GE++EC ++ D +T +++GF F+ F + K L + +++++ ++A + Q +KI+V + + E ++ +FE+FG+++ + FD TT + RGF +++ + K E ++C+KA Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPR------RAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 184
BLAST of DY263324 vs. ExPASy Swiss-Prot
Match: MSI1H_MOUSE (RNA-binding protein Musashi homolog 1 OS=Mus musculus GN=Msi1 PE=1 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 1.182e-16 Identity = 46/170 (27.06%), Postives = 87/170 (51.18%), Query Frame = 2 Query: 380 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGAGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 889 K+F+ GL W TTQE L FG GE++EC ++ D +T +++GF F+ F + K L + +++++ ++A + Q +KI+V + + E ++ +FE+FG+++ + FD TT + RGF +++ + K E ++C+KA Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPR------RAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 184 The following BLAST results are available for this feature:
BLAST of DY263324 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 97
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Sequences
The
following sequences are available for this feature:
EST sequence >DY263324 ID=DY263324; Name=DY263324; organism=Citrus clementina; type=EST; length=1310bpback to top |