DY263324

Overview
NameDY263324
Unique NameDY263324
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1310
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263324 vs. ExPASy Swiss-Prot
Match: HNRPD_HUMAN (Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens GN=HNRNPD PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 7.910e-21
Identity = 53/165 (32.12%), Postives = 87/165 (52.73%), Query Frame = 2
Query:  350 ETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGAGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 844
            E A     + K+F+ GL WDTT++ L   F   GE+ +C L +D +TG+++GF F++FK  ++  K +   + K+N ++   + A    T   VK          KI+V  +  D  +EK+R +F  FGE+E+  +  D  T K RGF    +K  E  +K +E+
Sbjct:   88 EAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242          
BLAST of DY263324 vs. ExPASy Swiss-Prot
Match: HNRPD_MOUSE (Heterogeneous nuclear ribonucleoprotein D0 OS=Mus musculus GN=Hnrnpd PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 1.033e-20
Identity = 53/165 (32.12%), Postives = 87/165 (52.73%), Query Frame = 2
Query:  350 ETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGAGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 844
            E A     + K+F+ GL WDTT++ L   F   GE+ +C L +D +TG+++GF F++FK  ++  K +   + K+N ++   + A    T   VK          KI+V  +  D  +EK+R +F  FGE+E+  +  D  T K RGF    +K  E  +K +E+
Sbjct:   88 EAAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242          
BLAST of DY263324 vs. ExPASy Swiss-Prot
Match: HNRPD_RAT (Heterogeneous nuclear ribonucleoprotein D0 OS=Rattus norvegicus GN=Hnrnpd PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.762e-20
Identity = 52/165 (31.52%), Postives = 87/165 (52.73%), Query Frame = 2
Query:  350 ETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGAGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 844
            E A     + K+F+ GL WDTT++ L   F   G++ +C L +D +TG+++GF F++FK  ++  K +   + K+N ++   + A    T   VK          KI+V  +  D  +EK+R +F  FGE+E+  +  D  T K RGF    +K  E  +K +E+
Sbjct:   86 EAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 240          
BLAST of DY263324 vs. ExPASy Swiss-Prot
Match: HNDLB_XENLA (Heterogeneous nuclear ribonucleoprotein D-like-B OS=Xenopus laevis GN=hnrpdl-B PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 8.185e-18
Identity = 57/220 (25.91%), Postives = 102/220 (46.36%), Query Frame = 2
Query:  305 TAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGAGVKEQGAAAQGE---RKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE----------------EPQKMFEGHQLQCQKAAEGKNR 907
            T  +T   LL  H     D  + + K+F+ GL WDT+++ L       GE+ +C +  D VTG+++GF F++FK   +  K L+  + K++ ++                ++  A QG+   +K++V  +  +  +E+++ +F  FGEIE   +  D  T + RGF    Y   E  +K LE                +P++++   Q + QK   G  R
Sbjct:   10 TLVSTLSRLLRRHKESNPDFFLIRSKMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLETKEHKLDGKLID-------------PKRAKALQGKEPPKKVFVGGLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTDEEPVQKLLESRFHQIGTGKCEIKAAQPKEVYRQQQQKQQKGGRGGTR 216          
BLAST of DY263324 vs. ExPASy Swiss-Prot
Match: YHKF_SCHPO (Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe GN=SPBC660.15 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.382e-17
Identity = 50/184 (27.17%), Postives = 91/184 (49.46%), Query Frame = 2
Query:  338 DHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGAGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 889
            D+  ET+  +    K+F+ GL W+TT +SL   F   GE+ +C ++ D  TG+++GF F+ FK  K  V  + + +  ++ ++       + P  A  +E+    +   K++V  VP D  +E+ R FF +FG +    +  D  TG+ RGF    Y+        + +P     G  ++ ++A
Sbjct:  150 DNAEETSPFNREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPK-CVNEVMSKEHHLDGKI-------IDPKRAIPREE---QEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRA 322          
BLAST of DY263324 vs. ExPASy Swiss-Prot
Match: ROAA_MOUSE (Heterogeneous nuclear ribonucleoprotein A/B OS=Mus musculus GN=Hnrnpab PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 5.306e-17
Identity = 50/170 (29.41%), Postives = 87/170 (51.18%), Query Frame = 2
Query:  380 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGAGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 889
            K+FV GL WDT+++ L   F   GE+ +C + +D  TG+++GF FI+FK   +  K L   + +++ R+       + P  A   ++       +KI+V  +  +  +EK+R +F +FGEIE   +  D    K RGF    +K  +  +K LE+      G + + + A
Sbjct:   76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRV-------IDPKKAMAMKKDPV----KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKVA 234          
BLAST of DY263324 vs. ExPASy Swiss-Prot
Match: HNRDL_RAT (Heterogeneous nuclear ribonucleoprotein D-like OS=Rattus norvegicus GN=Hnrpdl PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 6.929e-17
Identity = 47/165 (28.48%), Postives = 84/165 (50.91%), Query Frame = 2
Query:  347 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGAGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 841
            L+ +    S  K+F+ GL WDT+++ L       GE+ +C +  D VTG+++GF F++FK   +  K L+  + K++ ++       + P  A   +     +  +K++V  +  D  +E+++ +F  FGEIE   +  D  T + RGF    Y   E  +K LE
Sbjct:   41 LDPSSFPTSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKL-------IDPKRAKALK---GKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 195          
BLAST of DY263324 vs. ExPASy Swiss-Prot
Match: RA1L2_HUMAN (Heterogeneous nuclear ribonucleoprotein A1-like protein 2 OS=Homo sapiens GN=HNRNPA1L2 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.182e-16
Identity = 51/171 (29.82%), Postives = 87/171 (50.88%), Query Frame = 2
Query:  377 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGAGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 889
            RK+F+ GL ++TT ESL S F   G + +C ++ D  T +++GF F+ + T +    A+     KV+ R+   + A          ++  A    +KI+V  +  D E+  LR +FE++G+IE   I  D  +GK RGFA   +   +   K + +     +GH  + +KA
Sbjct:   14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNTTPHKVDGRVVEPKRA----VSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKA 180          
BLAST of DY263324 vs. ExPASy Swiss-Prot
Match: MSI1H_RAT (RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus GN=Msi1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.182e-16
Identity = 46/170 (27.06%), Postives = 87/170 (51.18%), Query Frame = 2
Query:  380 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGAGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 889
            K+F+ GL W TTQE L   FG  GE++EC ++ D +T +++GF F+ F  +    K L   + +++++    ++A         + Q       +KI+V  +  +   E ++ +FE+FG+++   + FD TT + RGF    +++ +   K  E          ++C+KA
Sbjct:   21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPR------RAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 184          
BLAST of DY263324 vs. ExPASy Swiss-Prot
Match: MSI1H_MOUSE (RNA-binding protein Musashi homolog 1 OS=Mus musculus GN=Msi1 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.182e-16
Identity = 46/170 (27.06%), Postives = 87/170 (51.18%), Query Frame = 2
Query:  380 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGAGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 889
            K+F+ GL W TTQE L   FG  GE++EC ++ D +T +++GF F+ F  +    K L   + +++++    ++A         + Q       +KI+V  +  +   E ++ +FE+FG+++   + FD TT + RGF    +++ +   K  E          ++C+KA
Sbjct:   21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPR------RAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 184          
The following BLAST results are available for this feature:
BLAST of DY263324 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
HNRPD_HUMAN7.910e-2132.12Heterogeneous nuclear ribonucleoprotein D0 OS=Homo... [more]
HNRPD_MOUSE1.033e-2032.12Heterogeneous nuclear ribonucleoprotein D0 OS=Mus ... [more]
HNRPD_RAT1.762e-2031.52Heterogeneous nuclear ribonucleoprotein D0 OS=Ratt... [more]
HNDLB_XENLA8.185e-1825.91Heterogeneous nuclear ribonucleoprotein D-like-B O... [more]
YHKF_SCHPO2.382e-1727.17Uncharacterized RNA-binding protein C660.15 OS=Sch... [more]
ROAA_MOUSE5.306e-1729.41Heterogeneous nuclear ribonucleoprotein A/B OS=Mus... [more]
HNRDL_RAT6.929e-1728.48Heterogeneous nuclear ribonucleoprotein D-like OS=... [more]
RA1L2_HUMAN1.182e-1629.82Heterogeneous nuclear ribonucleoprotein A1-like pr... [more]
MSI1H_RAT1.182e-1627.06RNA-binding protein Musashi homolog 1 OS=Rattus no... [more]
MSI1H_MOUSE1.182e-1627.06RNA-binding protein Musashi homolog 1 OS=Mus muscu... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA11BG07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263324 ID=DY263324; Name=DY263324; organism=Citrus clementina; type=EST; length=1310bp
TCGATAGCAGCTGAAGTGCTGAACCCTCTGTTTTCTCCTCAAAACCCTAG
GAACGTTTTCAGCAATGGCGAAAATCAACAAAGTTAAGAAACTAAAACAG
GCAACTACGAGCCAAAAACCCAACAAAAAAATACTCAAAAAAGAACCCAA
ATCCCTCAAAAAACCCGAACCGCCTCCCGTAGCCGCCGCCGCCGCCACCA
GCAGCAGCTGCAGCTCATCGTCCGAATCGGAGTCTGAACCGGAGTCAGAA
TCCATTTCAAGCCTCCTCGAACCTTACTCCAAGGACCAGCTCATCGACCT
CATCACCGCCGCCGCCACAAAAATCCCGCTTTTGCACGACCACATTCTCG
AAACGGCCGACAGGGACGTGTCCCAGCGGAAAATATTCGTTCACGGGCTC
GGATGGGACACGACGCAGGAGAGTTTGTTGTCGGCGTTCGGAGGTTCCGG
AGAAATCGAGGAGTGCAAGTTGGTGATCGATAAGGTGACCGGAAAGGCAA
AAGGGTTTGCTTTTATTGTGTTCAAAACGAGGAAAGCGGCCGTGAAAGCG
TTGAAGAATCCGCAGAGGAAGGTGAATAACCGAATGGCGTCTTGCCAGCT
GGCGTCAGTGGGCCCCACTGGTGCCGGGGTGAAGGAGCAGGGGGCGGCGG
CACAGGGGGAGAGGAAGATTTATGTGAGCAATGTGCCGAGAGATGTTGAA
AAGGAGAAATTGAGGGGGTTTTTTGAGAGATTTGGTGAGATTGAAACCGG
ACCGATAGGGTTTGATATTACCACTGGGAAGTCAAGAGGATTTGCAATTT
TCGTGTATAAAACTGTTGAGGGAGCGAGGAAGGCTTTAGAGGAGCCGCAG
AAGATGTTCGAGGGGCATCAGTTGCAATGCCAAAAGGCAGCTGAGGGAAA
GAACAGGACGAGTAGTAATAGTAGTAGCAGTTATAATCAAGCACAGATGA
TGATTCAGAACCAGCAACAGCCAATGCTTCAGGGGGCAACAGCAAGGACA
AGGGAATGAAGCAGGAGCCAGGGGCTTGCTGCCATGGGAGCAGCACAAAA
ATTGGCTTTGTTTCGGGCACAATCCGGGAAAGGCTTCCCTTTGATGGGAG
GGTTTTTGGGGAAATCCGGGGGTTGATTAAACCCAAGGGGGGGCGGGGGG
CTTGGCCTCCGGGGGGCAAATTCCGGCTAAAAAGGGGGGGGGGGAAGGGG
GGGGGTTCCTTCGGGGCTGGGGAAAATTTTGGGCCCGTGGGGGGCGCCTC
CCGGGGGGGTGCCCACCCACCCCACAAACGTGGTTTTTTCTTCCCAGAGA
GTGCTCCCCC
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