DY263330

Overview
NameDY263330
Unique NameDY263330
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1235
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263330 vs. ExPASy Swiss-Prot
Match: TTC15_HUMAN (Tetratricopeptide repeat protein 15 OS=Homo sapiens GN=TTC15 PE=1 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 1.060e-19
Identity = 88/319 (27.59%), Postives = 143/319 (44.83%), Query Frame = 2
Query:  164 LQDLATRGSWRTIIDNVSRARS--------QSLLTQPHHHLTYLAYNTLALM-KLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEE--------------SVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIEEGINGYVAINKRRCG*CT*RDWPDRLKGWEKGLERGPTGALKETLV 1051
            L+ L +  +WR  +D   R  +          LLT        L +  LAL+ KL  F  A+ E +   + +     YE YPH+YP R GSMVPFS+R L+A L   L N Q  LDR ++ +  V  K+   L + L E              S++ W+ R   V+  +    L  K+Y +  +  +  I      +P L+S +G I +Q+GD++ A+K F  VE++  +    DGL  ++    +V  N A ++L   ++  A R + E +       VA N             D L+  E  +++ P   L E+++
Sbjct:  384 LKQLISCRNWRAAVDLCGRLLTAHGQGYGKSGLLTSHTTDSLQLWFVRLALLVKLGLFQNAEMEFEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHK-VKTVCSKILANLEQGLAEDGGMSSVTQEGRQASIRLWRSRLGRVMYSMANCLLLMKDYVLAVEAYHSVIKYYPEQEPQLLSGIGRISLQIGDIKTAEKYFQDVEKVTQK---LDGLQGKI----MVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNAAVCLLYLGKLKDSLRQLEAMVQQDPRHYLHESVL 694          
BLAST of DY263330 vs. ExPASy Swiss-Prot
Match: TTC15_MOUSE (Tetratricopeptide repeat protein 15 OS=Mus musculus GN=Ttc15 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.808e-19
Identity = 93/319 (29.15%), Postives = 143/319 (44.83%), Query Frame = 2
Query:  164 LQDLATRGSWRTIIDNVSR---ARSQSLLTQ--PHHHLT---YLAYNTLALM-KLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEE--------------SVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIEEGINGYVAINKRRCG*CT*RDWPDRLKGWEKGLERGPTGALKETLV 1051
            L+ L +  +WR  +D   R   A  Q       P  H T    L +  LAL+ KL  F  A+ E +   + +     YE YPH+YP R GSMVPFS+R L+A L   L N Q  LDR +  +  V  K+   L + L E              SV+ W+ R   VL  +    L  K+Y +  D     I      +P L+S +G I +Q+GD++ A+K F  VE++  +    DGL  ++    +V  N+A +YL   ++  A + + E +       VA N             D L+  E  +++ P   L E+++
Sbjct:  446 LKQLISCRNWRAAVDLCGRLLTAHGQGYGKNGLPTSHTTDSLQLWFVRLALLVKLGLFQNAEMEFEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHR-VKTVCSKILANLEQGLAEDGGLSSVTQESRQASVQLWRSRLGRVLYSMANCLLLMKDYVLAVDAYLTVIKYYPEQEPQLLSGIGRILLQIGDIKTAEKYFQDVEKVTQK---LDGLQGKI----MVLMNRAFLYLGQNNFAEAHKFFTEILRMDPTNAVANNNAAVCLLYLGKLKDSLRQLEAMVQQDPRHYLHESVL 756          
The following BLAST results are available for this feature:
BLAST of DY263330 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TTC15_HUMAN1.060e-1927.59Tetratricopeptide repeat protein 15 OS=Homo sapien... [more]
TTC15_MOUSE1.808e-1929.15Tetratricopeptide repeat protein 15 OS=Mus musculu... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA11BH02RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263330 ID=DY263330; Name=DY263330; organism=Citrus clementina; type=EST; length=1235bp
CTCTTGTCATCTTCATCACCTTGATTTCCAAATCGCTGGCACAGCATCGA
AACTCAACACCATGACGGAGTCGCCACCCGTCTGTCAAAACCCAAGCCGA
TTCACGGATCCGTTAACCAACGAATTCGGATCCTTGAACGACCTCGTACC
GGACCTCGCATCTCTCCAAGACCTCGCCACGCGCGGCTCCTGGCGCACAA
TCATCGACAATGTCTCACGCGCCCGCTCCCAGTCTCTCCTCACGCAACCC
CACCACCACCTCACTTATCTCGCCTACAACACCCTCGCATTAATGAAACT
ACGCCGCTTCGATGAAGCCCAACAAGAGCTCGACTCTCTCGAAGACTTTA
ACAGCTCCGGTTACCAATACGAAACATATCCTCATATTTACCCGAACCGG
ACCGGATCCATGGTTCCCTTCTCTCTCCGCTGGCTCTACGCGGTTCTTCC
GATTAAGTTATCGAACCGGCAAGTGGGTCTGGACCGGTTTTATGAATTGC
TTGATTTCGTGAGAGAAAAGTTGGCACGAAAACTAGCTGAGAAATTGGAA
GAATCGGTGAAATCGTGGAAGAAAAGAGAGATTTTTGTTTTGAATTGTTT
GATTGGGTATCATTTGAGTAGTAAAGAGTATAATGTTTGTTTTGATTTGA
TGAATGAATCGATTGGTCGAGGTAATGGTTTGGACCCGATTTTGGTTTCG
AAATTAGGGTTTATACAGATGCAAGTTGGGGATTTAGAGGGGGCAAAGAA
GTCGTTTAATCGAGTGGAGGAAATGTTAAACGAGGGGAAATTTGAGGATG
GGTTGCTGAGTGAAGTTGAGTTTAGGAACCTTGTCAGTAGAAATAAGGCA
TTGATTTATTTGGTGGGGAAAGATTATGTATCTGCGGTGAGAGAGTATGA
GGAGTGTATAGAAGAGGGGATAAATGGATATGTGGCGATAAATAAAAGGC
GTTGTGGTTGATGTACTTGAAGGGATTGGCCGGATCGATTAAAGGGGTGG
GAAAAGGGCCTGGAAAGAGGGCCAACGGGGGCGTTAAAAGAAACTTTGGT
TGGGAAATTTGGGTAATTAGGTAAAACCTGGCATAAGGTCACCATTTCAA
AAAATAAAAAGGGAACCTGGATAATTGGGAATGGGGAGGAATTGGCCCCG
GAAGAATTTTGATTTTTTTCTGGGTACAAAAGGATTTTAAGGGAAATTTT
GAAATTTTTTGTACTAAAAAAATTTCGGGGGGTTT
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