DY263331

Overview
NameDY263331
Unique NameDY263331
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1266
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263331 vs. ExPASy Swiss-Prot
Match: UBAX1_ARATH (UBA and UBX domain-containing protein At4g15410 OS=Arabidopsis thaliana GN=At4g15410 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 8.879e-30
Identity = 77/157 (49.04%), Postives = 93/157 (59.24%), Query Frame = 2
Query:   23 ASRDKKPAKPSSSR-------AGGIRTLSDLNRRSGPXXXXXXXAPQEYYTGGEKSGMLVQDPSKGDPNDVDAIFNQAKELGAVEGPLEHLXXXXXXXXFTGTARLLSGETVPSAPQQ-----PEPIVHNIVFWANGFTVNDGPLRRLDDPENASFL 457
            A  +K+   PS  R       AG IRT +DLNR              EYYTGG+KSGM+VQDP K    DVD +F+QA++  AV+ P+E          FTG ARLLSGE V S+PQQ     P+ I+H I FW NGFTVNDGPLR   DPENA+F+
Sbjct:  111 AGENKETENPSGIRSSRSRQHAGNIRTFADLNRSPADGEGSDSDEANEYYTGGQKSGMMVQDPKK--VKDVDELFDQARQ-SAVDRPVE--PSRSASTSFTGAARLLSGEAVSSSPQQQQQEQPQRIMHTITFWLNGFTVNDGPLRGFSDPENAAFM 262          

HSP 2 Score: 72.0182 bits (175), Expect = 2.763e-21
Identity = 34/58 (58.62%), Postives = 42/58 (72.41%), Query Frame = 3
Query:  699 LQSIKKSECPKELEPADKRSSVHVNLIRRDVKCPEPEKHHVPFQGVGRTLGSSSTAAS 872
            + SI +SECP ELEPADK+  VHV+L+RR     EP K   PFQGVGRTLG+S + +S
Sbjct:  262 MNSISRSECPSELEPADKKIPVHVDLVRRGENFTEPPKPKNPFQGVGRTLGASGSGSS 319          

HSP 3 Score: 49.2914 bits (116), Expect = 2.763e-21
Identity = 23/46 (50.00%), Postives = 32/46 (69.57%), Query Frame = 2
Query:  893 PGHTASSSSEGLVVDENLPSTSIQIQVADGTRLKAHFNPSHPIRQL 1030
            P + A + S GLVVD   P+TSIQ+++ADGTRL + FN  H +R +
Sbjct:  328 PMNVAPAPSRGLVVDPAAPTTSIQLRLADGTRLVSRFNNHHTVRDV 373          

HSP 4 Score: 22.7126 bits (47), Expect = 2.763e-21
Identity = 8/16 (50.00%), Postives = 11/16 (68.75%), Query Frame = 1
Query: 1060 GTARKYQLANKGIPPK 1107
            G +++YQL   G PPK
Sbjct:  383 GGSKEYQLLTMGFPPK 398          
BLAST of DY263331 vs. ExPASy Swiss-Prot
Match: NSF1C_DICDI (NSFL1 cofactor p47 homolog OS=Dictyostelium discoideum GN=nsfl1c PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.427e-13
Identity = 52/155 (33.55%), Postives = 73/155 (47.10%), Query Frame = 2
Query:   50 PSSSRAGGIRTLSDLNRRS------GPXXXXXXXAPQEYYTGGEKSGMLVQDPSK-----GDPNDVDAIFNQAKELGAV---EGPLEHLXXXXXXXXFTGTARLLSGETVPSAPQQPEP----IVHNIVFWANGFTVNDGPLRRLDDPENASFLE 460
            P+  R GGIRTLSD N                    Q+Y+TGGEKSG++V+   K     G  + V+ +F+ AK  GAV   E  +E            G      G    S P++ +P    +   + FW  GFT++DGPLR+ D+PEN   L+
Sbjct:   93 PAGGRVGGIRTLSDFNNDDHDDHDHSDGDDDEDDRSQQYFTGGEKSGLVVESAPKKGKNGGSGDIVNDVFDSAKRHGAVASNEKKVEKPDSFDSVGYQLGATD--QGNRNVSKPKEKDPNSQVVEVKVTFWNQGFTIDDGPLRKYDNPENKELLD 245          
BLAST of DY263331 vs. ExPASy Swiss-Prot
Match: UBX1_EMENI (UBX domain-containing protein 1 OS=Emericella nidulans GN=ubx1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.412e-11
Identity = 51/160 (31.87%), Postives = 68/160 (42.50%), Query Frame = 2
Query:   17 SMASRDKKPAKPSSSRAGGIR---TLSDLNRRSGPXXXXXXXAPQEYYTGGEKSGMLVQDPSKGDPNDVDAIFNQAKELGAVEGPLEHLXXXXXXXXFTGTARLLSGETVPSA----------PQQPEPIVHNIVFWANGFTVNDGPLRRLDDPENASFL 457
            S  S    P + SSSR    +   TL DL   +           Q+++ GGEKSG+ VQ+P       ++              P  +         FTG AR L GE  PS           PQ P  +   + FWA+GF+V+DG L R DDP+NA  L
Sbjct:   60 SAKSSSSTPRESSSSRKQPPKKFATLGDLASGAADSSDDDDDENQDFFAGGEKSGLAVQNPDDLKKKIIEKARRTQLPASDDSEPRRNY--------FTGPARTLGGEDTPSRVIDTPSGPAQPQIPRRVRRTLHFWADGFSVDDGELYRSDDPQNAEIL 211          
The following BLAST results are available for this feature:
BLAST of DY263331 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
UBAX1_ARATH8.879e-3049.04UBA and UBX domain-containing protein At4g15410 OS... [more]
NSF1C_DICDI4.427e-1333.55NSFL1 cofactor p47 homolog OS=Dictyostelium discoi... [more]
UBX1_EMENI5.412e-1131.88UBX domain-containing protein 1 OS=Emericella nidu... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA11BH03RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263331 ID=DY263331; Name=DY263331; organism=Citrus clementina; type=EST; length=1266bp
CAGAATAAACTTCCAATCCATGGCGTCACGTGACAAAAAACCAGCAAAAC
CATCAAGCAGTCGGGCCGGCGGTATACGCACGCTCTCCGATCTGAACCGG
CGGTCGGGACCCGACTCCGACTCAGACGATGATGCACCTCAAGAGTATTA
CACTGGTGGCGAGAAGAGTGGTATGCTTGTCCAAGATCCTTCCAAGGGCG
ATCCTAATGATGTGGATGCGATTTTCAATCAGGCTAAGGAACTGGGAGCT
GTAGAAGGGCCGCTTGAGCATCTCAGTCCATCTTCAAGCTCAAGAAGCTT
TACTGGAACTGCTAGATTACTCTCGGGGGAAACTGTACCGTCTGCACCTC
AGCAGCCTGAGCCCATTGTTCATAACATTGTTTTCTGGGCCAATGGTTTC
ACTGTTAATGATGGTCCCTTGAGGAGGTTGGATGATCCTGAAAATGCATC
TTTCTTAGAGGTAATGACCTTAATGTCTCACTGCTATATGCAGACATAAA
ATTACAAACAAGGAGAGAGATTGTATTGTCTTGCTGGACTTGTCAATATG
TGGTTTCTATCCTTCTGCAGATAGTCAAAACTTGTGCCCAGTTTCAACAT
TTCTTCTGAAGGACATGTTGGATTCTTTTGTGTTTGCTTTTCAAAGTATT
AATTGTGTTTTAGTGGTGATATTGTGCTTATGAGGTGGTTGCATCCATTT
GCAGAGCATCAAAAAGTCTGAGTGTCCAAAAGAGCTAGAGCCTGCTGATA
AAAGGTCCTCAGTTCATGTCAATCTGATAAGGAGGGATGTGAAATGCCCT
GAACCAGAGAAGCACCATGTTCCATTTCAGGGTGTTGGAAGAACACTGGG
TAGCAGCAGTACTGCAGCTTCTGAACCAACTGTTGATTCCCCCCCGGTCA
CACTGCTTCCTCCTCTTCTGAGGGTCTGGTTGTTGATGAAAACCTTCCGT
CGACTTCCATTCAGATTCAGGTGGCGGACGGAACCCGCTTGAAAGCACAC
TTCAATCCTTCCCACCCAATCCGCCAACTTTCATTCCTTCATTGATGCCT
TTTGGGCTTGGGACGGCTAGGAAATATCAGCTTGCGAATAAGGGGATTCC
TCCCAAAAGTTTCCCGGGATAGAACTCCAAACCAAAAAGCAGGGCGGGCC
TTGGCAATTTGGGGGGGTTTCCCAAAAATTTTAAGAAAAACCCCTCTTCC
CCTTTAACCCCCTCTTCGTTTTCCTTATTTTTTAAAGGGAAAAAATTTTT
TTTTTGGGCTCTTTTT
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