DY263337
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY263337 vs. ExPASy Swiss-Prot
Match: RD23D_ARATH (Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana GN=RAD23-4 PE=2 SV=2) HSP 1 Score: 143.665 bits (361), Expect = 1.148e-38 Identity = 71/106 (66.98%), Postives = 78/106 (73.58%), Query Frame = 3 Query: 579 VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANXXXXXXXXXXXXXXXXXGPNANPLDLFPQ 896 VYG AASNLVAG LE +QQILDMGGG+WDRDTVVRALRAA+NNPERAVEYLYSGIP QAE+ PVA+AP G+ A GPNANPL+LFPQ Sbjct: 134 VYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPATGEQAANPLAQPQQAAAPAAATGGPNANPLNLFPQ 239 HSP 2 Score: 38.891 bits (89), Expect = 1.148e-38 Identity = 19/31 (61.29%), Postives = 21/31 (67.74%), Query Frame = 2 Query: 959 STVFRFCEPWVQAIPHLLQPRLQELGKQNPQ 1051 S F+ VQA P +LQP LQELGKQNPQ Sbjct: 259 SQQFQALRAMVQANPQILQPMLQELGKQNPQ 289 HSP 3 Score: 108.227 bits (269), Expect = 1.076e-22 Identity = 54/76 (71.05%), Postives = 66/76 (86.84%), Query Frame = 3 Query: 156 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 383 IFVKTL G++F++EVKP D V DVK IETV+G++ YPAA+QMLI+QGKVLKD+TTLEEN V ENSF+VIML+K K Sbjct: 3 IFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLEENNVVENSFIVIMLSKTK 77
BLAST of DY263337 vs. ExPASy Swiss-Prot
Match: RD23C_ARATH (Putative DNA repair protein RAD23-3 OS=Arabidopsis thaliana GN=RAD23-3 PE=2 SV=2) HSP 1 Score: 141.354 bits (355), Expect = 2.740e-37 Identity = 75/107 (70.09%), Postives = 80/107 (74.77%), Query Frame = 3 Query: 579 VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGN-GQAANXXXXXXXXXXXXXXXXXGPNANPLDLFPQ 896 VYG AASNL AG+NLE IQQILDMGGGTWDR+TVV ALRAA+NNPERAVEYLY+GIPEQAEV PVAR P + GQ AN GPNANPLDLFPQ Sbjct: 173 VYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYTGIPEQAEVPPVARPPASAGQPAN---PPAQTQQPAAAPASGPNANPLDLFPQ 276 HSP 2 Score: 36.5798 bits (83), Expect = 2.740e-37 Identity = 18/30 (60.00%), Postives = 20/30 (66.67%), Query Frame = 2 Query: 959 STVFRFCEPWVQAIPHLLQPRLQELGKQNP 1048 S F+ VQA P +LQP LQELGKQNP Sbjct: 296 SQQFQALRAMVQANPQVLQPMLQELGKQNP 325 HSP 3 Score: 124.405 bits (311), Expect = 1.451e-27 Identity = 59/76 (77.63%), Postives = 71/76 (93.42%), Query Frame = 3 Query: 156 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 383 IFVKTLKGT F++EVKPED+V DVK IE+VQG+DVYPAA+QMLI+QGKVLKD+TT+EENKVAENSF+VIM+ K+K Sbjct: 3 IFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIEENKVAENSFIVIMMNKSK 78
BLAST of DY263337 vs. ExPASy Swiss-Prot
Match: RAD23_ORYSJ (Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica GN=RAD23 PE=1 SV=2) HSP 1 Score: 115.546 bits (288), Expect = 4.649e-30 Identity = 65/131 (49.62%), Postives = 75/131 (57.25%), Query Frame = 3 Query: 582 YGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAE--VQPVARAPGNGQAANXXXXXXXXXXXXXXXXXGPNANPLDLFPQXXXXXXXXXXXXXXXXXXRNSPQF 968 YG A SNLVAG+NLE IQ IL+MGGG WDRD V+ AL AA+NNPERAVEYLYSG+PEQ + V P + P N A+ GPNA+PLDLFPQ RN+ QF Sbjct: 145 YGQATSNLVAGSNLEATIQSILEMGGGIWDRDIVLHALSAAFNNPERAVEYLYSGVPEQMDIPVPPPSIQPANPTQAS----QATQPAAPSILSSGPNASPLDLFPQALPNASTDAAGLGNLDALRNNAQF 271 HSP 2 Score: 38.1206 bits (87), Expect = 4.649e-30 Identity = 19/28 (67.86%), Postives = 20/28 (71.43%), Query Frame = 2 Query: 968 FRFCEPWVQAIPHLLQPRLQELGKQNPQ 1051 FR VQA P +LQP LQELGKQNPQ Sbjct: 271 FRTLLSLVQANPQILQPLLQELGKQNPQ 298 HSP 3 Score: 100.523 bits (249), Expect = 2.243e-20 Identity = 51/76 (67.11%), Postives = 59/76 (77.63%), Query Frame = 3 Query: 156 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 383 I VKTLKG++F +EV V DVK IET QG +YPA QQMLI+QGKVLKDDTTL+ENKV ENSF+VIML + K Sbjct: 3 ISVKTLKGSTFQIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLDENKVLENSFLVIMLRQGK 78
BLAST of DY263337 vs. ExPASy Swiss-Prot
Match: RD23A_ARATH (Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana GN=RAD23-1 PE=2 SV=3) HSP 1 Score: 115.161 bits (287), Expect = 5.004e-29 Identity = 60/108 (55.56%), Postives = 75/108 (69.44%), Query Frame = 3 Query: 582 YGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQ---PVARAPGNGQAANXXXXXXXXXXXXXXXXXGPNANPLDLFPQ 896 YG AAS LV+G++LE +QQI++MGGG+WD++TV RALRAAYNNPERAV+YLYSGIP+ AEV P A+ G+G A GPN++PLDLFPQ Sbjct: 135 YGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA------------PVAPASGGPNSSPLDLFPQ 230 HSP 2 Score: 35.039 bits (79), Expect = 5.004e-29 Identity = 16/28 (57.14%), Postives = 19/28 (67.86%), Query Frame = 2 Query: 968 FRFCEPWVQAIPHLLQPRLQELGKQNPQ 1051 F+ V + P +LQP LQELGKQNPQ Sbjct: 253 FQQLRTMVHSNPQILQPMLQELGKQNPQ 280 HSP 3 Score: 91.2781 bits (225), Expect = 1.361e-17 Identity = 43/74 (58.11%), Postives = 55/74 (74.32%), Query Frame = 3 Query: 162 VKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 383 VKTLKG+ F++ V P DT+ VK IE QG D YP QQ+LI+ GKVLKD+T+L ENKV E F+V+ML+K+K Sbjct: 5 VKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLVENKVTEEGFLVVMLSKSK 78
BLAST of DY263337 vs. ExPASy Swiss-Prot
Match: RD23B_ARATH (Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana GN=RAD23-2 PE=2 SV=2) HSP 1 Score: 108.997 bits (271), Expect = 3.408e-27 Identity = 55/105 (52.38%), Postives = 69/105 (65.71%), Query Frame = 3 Query: 582 YGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANXXXXXXXXXXXXXXXXXGPNANPLDLFPQ 896 YG AAS LV+G+++E +QQI++MGGG+WD++TV RALRAAYNNPERAV+YLYSGIPE + P G G GPN++PLDLFPQ Sbjct: 133 YGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPETVTI-PATNLSGVGSGRE---------LTAPPPSGGPNSSPLDLFPQ 227 HSP 2 Score: 35.039 bits (79), Expect = 3.408e-27 Identity = 16/28 (57.14%), Postives = 19/28 (67.86%), Query Frame = 2 Query: 968 FRFCEPWVQAIPHLLQPRLQELGKQNPQ 1051 F+ V + P +LQP LQELGKQNPQ Sbjct: 250 FQQLRSMVNSNPQILQPMLQELGKQNPQ 277 HSP 3 Score: 90.1225 bits (222), Expect = 3.032e-17 Identity = 43/74 (58.11%), Postives = 54/74 (72.97%), Query Frame = 3 Query: 162 VKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 383 VKTLKG+ F++ V P DT+ VK IE Q D YP QQ+LI+ GKVLKD+TTL ENKV E F+V+ML+K+K Sbjct: 5 VKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLVENKVTEEGFLVVMLSKSK 78
BLAST of DY263337 vs. ExPASy Swiss-Prot
Match: RD23B_RAT (UV excision repair protein RAD23 homolog B OS=Rattus norvegicus GN=Rad23b PE=1 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 3.137e-14 Identity = 37/76 (48.68%), Postives = 55/76 (72.37%), Query Frame = 3 Query: 156 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 383 + +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K Sbjct: 3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNFVVVMVTKPK 78
BLAST of DY263337 vs. ExPASy Swiss-Prot
Match: RD23B_MOUSE (UV excision repair protein RAD23 homolog B OS=Mus musculus GN=Rad23b PE=1 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 3.137e-14 Identity = 37/76 (48.68%), Postives = 55/76 (72.37%), Query Frame = 3 Query: 156 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 383 + +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K Sbjct: 3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNFVVVMVTKPK 78
BLAST of DY263337 vs. ExPASy Swiss-Prot
Match: RD23B_HUMAN (UV excision repair protein RAD23 homolog B OS=Homo sapiens GN=RAD23B PE=1 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 3.137e-14 Identity = 37/76 (48.68%), Postives = 55/76 (72.37%), Query Frame = 3 Query: 156 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 383 + +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K Sbjct: 3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK 78
BLAST of DY263337 vs. ExPASy Swiss-Prot
Match: RD23B_BOVIN (UV excision repair protein RAD23 homolog B OS=Bos taurus GN=RAD23B PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 6.989e-14 Identity = 36/76 (47.37%), Postives = 55/76 (72.37%), Query Frame = 3 Query: 156 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 383 + +KTL+ +F +++ P++TV +K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K Sbjct: 3 VTLKTLQQQTFKIDIDPDETVRALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK 78
BLAST of DY263337 vs. ExPASy Swiss-Prot
Match: RD23A_HUMAN (UV excision repair protein RAD23 homolog A OS=Homo sapiens GN=RAD23A PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 6.542e-12 Identity = 33/76 (43.42%), Postives = 52/76 (68.42%), Query Frame = 3 Query: 156 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 383 I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + + ++ E +FVV+M+TK K Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTK 80 The following BLAST results are available for this feature:
BLAST of DY263337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 12
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Sequences
The
following sequences are available for this feature:
EST sequence >DY263337 ID=DY263337; Name=DY263337; organism=Citrus clementina; type=EST; length=1287bpback to top |