DY263337

Overview
NameDY263337
Unique NameDY263337
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1287
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263337 vs. ExPASy Swiss-Prot
Match: RD23D_ARATH (Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana GN=RAD23-4 PE=2 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 1.148e-38
Identity = 71/106 (66.98%), Postives = 78/106 (73.58%), Query Frame = 3
Query:  579 VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANXXXXXXXXXXXXXXXXXGPNANPLDLFPQ 896
            VYG AASNLVAG  LE  +QQILDMGGG+WDRDTVVRALRAA+NNPERAVEYLYSGIP QAE+ PVA+AP  G+ A                  GPNANPL+LFPQ
Sbjct:  134 VYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPATGEQAANPLAQPQQAAAPAAATGGPNANPLNLFPQ 239          

HSP 2 Score: 38.891 bits (89), Expect = 1.148e-38
Identity = 19/31 (61.29%), Postives = 21/31 (67.74%), Query Frame = 2
Query:  959 STVFRFCEPWVQAIPHLLQPRLQELGKQNPQ 1051
            S  F+     VQA P +LQP LQELGKQNPQ
Sbjct:  259 SQQFQALRAMVQANPQILQPMLQELGKQNPQ 289          

HSP 3 Score: 108.227 bits (269), Expect = 1.076e-22
Identity = 54/76 (71.05%), Postives = 66/76 (86.84%), Query Frame = 3
Query:  156 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 383
            IFVKTL G++F++EVKP D V DVK  IETV+G++ YPAA+QMLI+QGKVLKD+TTLEEN V ENSF+VIML+K K
Sbjct:    3 IFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLEENNVVENSFIVIMLSKTK 77          
BLAST of DY263337 vs. ExPASy Swiss-Prot
Match: RD23C_ARATH (Putative DNA repair protein RAD23-3 OS=Arabidopsis thaliana GN=RAD23-3 PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 2.740e-37
Identity = 75/107 (70.09%), Postives = 80/107 (74.77%), Query Frame = 3
Query:  579 VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGN-GQAANXXXXXXXXXXXXXXXXXGPNANPLDLFPQ 896
            VYG AASNL AG+NLE  IQQILDMGGGTWDR+TVV ALRAA+NNPERAVEYLY+GIPEQAEV PVAR P + GQ AN                 GPNANPLDLFPQ
Sbjct:  173 VYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYTGIPEQAEVPPVARPPASAGQPAN---PPAQTQQPAAAPASGPNANPLDLFPQ 276          

HSP 2 Score: 36.5798 bits (83), Expect = 2.740e-37
Identity = 18/30 (60.00%), Postives = 20/30 (66.67%), Query Frame = 2
Query:  959 STVFRFCEPWVQAIPHLLQPRLQELGKQNP 1048
            S  F+     VQA P +LQP LQELGKQNP
Sbjct:  296 SQQFQALRAMVQANPQVLQPMLQELGKQNP 325          

HSP 3 Score: 124.405 bits (311), Expect = 1.451e-27
Identity = 59/76 (77.63%), Postives = 71/76 (93.42%), Query Frame = 3
Query:  156 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 383
            IFVKTLKGT F++EVKPED+V DVK  IE+VQG+DVYPAA+QMLI+QGKVLKD+TT+EENKVAENSF+VIM+ K+K
Sbjct:    3 IFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIEENKVAENSFIVIMMNKSK 78          
BLAST of DY263337 vs. ExPASy Swiss-Prot
Match: RAD23_ORYSJ (Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica GN=RAD23 PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 4.649e-30
Identity = 65/131 (49.62%), Postives = 75/131 (57.25%), Query Frame = 3
Query:  582 YGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAE--VQPVARAPGNGQAANXXXXXXXXXXXXXXXXXGPNANPLDLFPQXXXXXXXXXXXXXXXXXXRNSPQF 968
            YG A SNLVAG+NLE  IQ IL+MGGG WDRD V+ AL AA+NNPERAVEYLYSG+PEQ +  V P +  P N   A+                 GPNA+PLDLFPQ                  RN+ QF
Sbjct:  145 YGQATSNLVAGSNLEATIQSILEMGGGIWDRDIVLHALSAAFNNPERAVEYLYSGVPEQMDIPVPPPSIQPANPTQAS----QATQPAAPSILSSGPNASPLDLFPQALPNASTDAAGLGNLDALRNNAQF 271          

HSP 2 Score: 38.1206 bits (87), Expect = 4.649e-30
Identity = 19/28 (67.86%), Postives = 20/28 (71.43%), Query Frame = 2
Query:  968 FRFCEPWVQAIPHLLQPRLQELGKQNPQ 1051
            FR     VQA P +LQP LQELGKQNPQ
Sbjct:  271 FRTLLSLVQANPQILQPLLQELGKQNPQ 298          

HSP 3 Score: 100.523 bits (249), Expect = 2.243e-20
Identity = 51/76 (67.11%), Postives = 59/76 (77.63%), Query Frame = 3
Query:  156 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 383
            I VKTLKG++F +EV     V DVK  IET QG  +YPA QQMLI+QGKVLKDDTTL+ENKV ENSF+VIML + K
Sbjct:    3 ISVKTLKGSTFQIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLDENKVLENSFLVIMLRQGK 78          
BLAST of DY263337 vs. ExPASy Swiss-Prot
Match: RD23A_ARATH (Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana GN=RAD23-1 PE=2 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 5.004e-29
Identity = 60/108 (55.56%), Postives = 75/108 (69.44%), Query Frame = 3
Query:  582 YGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQ---PVARAPGNGQAANXXXXXXXXXXXXXXXXXGPNANPLDLFPQ 896
            YG AAS LV+G++LE  +QQI++MGGG+WD++TV RALRAAYNNPERAV+YLYSGIP+ AEV    P A+  G+G A                   GPN++PLDLFPQ
Sbjct:  135 YGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA------------PVAPASGGPNSSPLDLFPQ 230          

HSP 2 Score: 35.039 bits (79), Expect = 5.004e-29
Identity = 16/28 (57.14%), Postives = 19/28 (67.86%), Query Frame = 2
Query:  968 FRFCEPWVQAIPHLLQPRLQELGKQNPQ 1051
            F+     V + P +LQP LQELGKQNPQ
Sbjct:  253 FQQLRTMVHSNPQILQPMLQELGKQNPQ 280          

HSP 3 Score: 91.2781 bits (225), Expect = 1.361e-17
Identity = 43/74 (58.11%), Postives = 55/74 (74.32%), Query Frame = 3
Query:  162 VKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 383
            VKTLKG+ F++ V P DT+  VK  IE  QG D YP  QQ+LI+ GKVLKD+T+L ENKV E  F+V+ML+K+K
Sbjct:    5 VKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLVENKVTEEGFLVVMLSKSK 78          
BLAST of DY263337 vs. ExPASy Swiss-Prot
Match: RD23B_ARATH (Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana GN=RAD23-2 PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 3.408e-27
Identity = 55/105 (52.38%), Postives = 69/105 (65.71%), Query Frame = 3
Query:  582 YGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANXXXXXXXXXXXXXXXXXGPNANPLDLFPQ 896
            YG AAS LV+G+++E  +QQI++MGGG+WD++TV RALRAAYNNPERAV+YLYSGIPE   + P     G G                     GPN++PLDLFPQ
Sbjct:  133 YGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPETVTI-PATNLSGVGSGRE---------LTAPPPSGGPNSSPLDLFPQ 227          

HSP 2 Score: 35.039 bits (79), Expect = 3.408e-27
Identity = 16/28 (57.14%), Postives = 19/28 (67.86%), Query Frame = 2
Query:  968 FRFCEPWVQAIPHLLQPRLQELGKQNPQ 1051
            F+     V + P +LQP LQELGKQNPQ
Sbjct:  250 FQQLRSMVNSNPQILQPMLQELGKQNPQ 277          

HSP 3 Score: 90.1225 bits (222), Expect = 3.032e-17
Identity = 43/74 (58.11%), Postives = 54/74 (72.97%), Query Frame = 3
Query:  162 VKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 383
            VKTLKG+ F++ V P DT+  VK  IE  Q  D YP  QQ+LI+ GKVLKD+TTL ENKV E  F+V+ML+K+K
Sbjct:    5 VKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLVENKVTEEGFLVVMLSKSK 78          
BLAST of DY263337 vs. ExPASy Swiss-Prot
Match: RD23B_RAT (UV excision repair protein RAD23 homolog B OS=Rattus norvegicus GN=Rad23b PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.137e-14
Identity = 37/76 (48.68%), Postives = 55/76 (72.37%), Query Frame = 3
Query:  156 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 383
            + +KTL+  +F +++ PE+TV  +K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K
Sbjct:    3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNFVVVMVTKPK 78          
BLAST of DY263337 vs. ExPASy Swiss-Prot
Match: RD23B_MOUSE (UV excision repair protein RAD23 homolog B OS=Mus musculus GN=Rad23b PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.137e-14
Identity = 37/76 (48.68%), Postives = 55/76 (72.37%), Query Frame = 3
Query:  156 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 383
            + +KTL+  +F +++ PE+TV  +K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K
Sbjct:    3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNFVVVMVTKPK 78          
BLAST of DY263337 vs. ExPASy Swiss-Prot
Match: RD23B_HUMAN (UV excision repair protein RAD23 homolog B OS=Homo sapiens GN=RAD23B PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.137e-14
Identity = 37/76 (48.68%), Postives = 55/76 (72.37%), Query Frame = 3
Query:  156 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 383
            + +KTL+  +F +++ PE+TV  +K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K
Sbjct:    3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK 78          
BLAST of DY263337 vs. ExPASy Swiss-Prot
Match: RD23B_BOVIN (UV excision repair protein RAD23 homolog B OS=Bos taurus GN=RAD23B PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 6.989e-14
Identity = 36/76 (47.37%), Postives = 55/76 (72.37%), Query Frame = 3
Query:  156 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 383
            + +KTL+  +F +++ P++TV  +K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K
Sbjct:    3 VTLKTLQQQTFKIDIDPDETVRALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK 78          
BLAST of DY263337 vs. ExPASy Swiss-Prot
Match: RD23A_HUMAN (UV excision repair protein RAD23 homolog A OS=Homo sapiens GN=RAD23A PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.542e-12
Identity = 33/76 (43.42%), Postives = 52/76 (68.42%), Query Frame = 3
Query:  156 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 383
            I +KTL+  +F + ++P++TV  +K KIE  +G D +P A Q LIY GK+L DD  + + ++ E +FVV+M+TK K
Sbjct:    5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTK 80          
The following BLAST results are available for this feature:
BLAST of DY263337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
RD23D_ARATH1.148e-3866.98Putative DNA repair protein RAD23-4 OS=Arabidopsis... [more]
RD23C_ARATH2.740e-3770.09Putative DNA repair protein RAD23-3 OS=Arabidopsis... [more]
RAD23_ORYSJ4.649e-3049.62Probable DNA repair protein RAD23 OS=Oryza sativa ... [more]
RD23A_ARATH5.004e-2955.56Putative DNA repair protein RAD23-1 OS=Arabidopsis... [more]
RD23B_ARATH3.408e-2752.38Putative DNA repair protein RAD23-2 OS=Arabidopsis... [more]
RD23B_RAT3.137e-1448.68UV excision repair protein RAD23 homolog B OS=Ratt... [more]
RD23B_MOUSE3.137e-1448.68UV excision repair protein RAD23 homolog B OS=Mus ... [more]
RD23B_HUMAN3.137e-1448.68UV excision repair protein RAD23 homolog B OS=Homo... [more]
RD23B_BOVIN6.989e-1447.37UV excision repair protein RAD23 homolog B OS=Bos ... [more]
RD23A_HUMAN6.542e-1243.42UV excision repair protein RAD23 homolog A OS=Homo... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA11BH09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263337 ID=DY263337; Name=DY263337; organism=Citrus clementina; type=EST; length=1287bp
CTTCTATATGCTTCTTAACTTGTGCTTCGGTTTTCTCTCTCCGACTGTAT
CAATTATAGATAGACATTAAAAAGACCTTGCGGATCGGAAAACCAAATAA
AATAGTTGAATTCGAGAGACCCAACGGAACGTAGAAAAAGAAGAAGATGA
TGAAGATTTTCGTTAAAACTCTCAAAGGAACTTCTTTCGACGTCGAAGTG
AAACCTGAAGACACGGTCTTTGATGTGAAAATGAAGATAGAAACTGTTCA
AGGATCGGATGTTTATCCTGCTGCACAACAGATGCTGATTTATCAGGGGA
AAGTCCTCAAAGATGATACTACACTGGAAGAGAACAAAGTAGCTGAAAAT
AGTTTTGTTGTTATTATGTTAACAAAGAATAAGAGACCAACTGGTGAAGG
TTCAACTACGTCAACTGCGACTACAAAGGCTCCCCAGTCAAGTGCCCCAA
CCCCTGCAGTGACCCCAGCAACAGCTCCTCAGACTGCCGTGCCAATCTCT
ACAGAGCCTACACCTGCTCCTACTCCTGCTCCTGCTTCTGCTTCTGTGTC
ATCAGTTTCTGCTACGTCAGAGTCTGGTGTGTATGGGCATGCTGCATCTA
ATCTGGTTGCTGGGAACAACTTGGAGGGAGCAATCCAGCAGATTCTTGAT
ATGGGTGGAGGGACTTGGGATAGAGATACTGTTGTTCGTGCTCTTCGAGC
TGCTTATAATAATCCTGAGAGGGCTGTTGAATATTTATATTCTGGTATAC
CTGAGCAAGCTGAAGTTCAACCTGTGGCCCGCGCCCCTGGTAATGGACAA
GCTGCTAACTCTCCAACTCAGATGCCACAGCCAACCCCACCGGCACCCGT
TACTTCTAGTGGGCCAAATGCAAATCCTTTGGACCTCTTTCCTCAGGGCC
TTCTTGACGTGGGTTCAGGGGCAGCTGGCGCTGGCAGTCTTGGACTTTTA
CGTAATAGTCCACAGTTTTCAGGTTTTGCGAGCCATGGGTGCAGGCAATC
CCTCATTTATTGCAGCCCAGGCTTCAAGAATTGGGGAAACAAAATCCTCA
ACCTAGGGGGGGCTTATTCCGGGAACATCCAGGCTGACTTTCCTCCGGCT
TATCAATGAACCCGGTTTCAGGGGGGGGGGAGGGGGAAATTGGGGGGGGG
ACCCGCTTTGGGGGGGGTTAAAGGGCCCGGGTCCAAAAAAAAAATTCCCC
GCCCCCCCAAAAAAAAGGGGGGAAAACCCCAAAAAAAAAGACCCCTTTTT
GGAGGGGCCAAGGGGGGGGGGCCTTTTTTTTATATTT
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