DY263348

Overview
NameDY263348
Unique NameDY263348
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1311
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263348 vs. ExPASy Swiss-Prot
Match: PUB29_ARATH (U-box domain-containing protein 29 OS=Arabidopsis thaliana GN=PUB29 PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 2.293e-44
Identity = 105/260 (40.38%), Postives = 159/260 (61.15%), Query Frame = 1
Query:  148 ELYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWSHQL----------TVPEQEVRVWXXXXXXXXXXXXXCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLIL--NTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAE--DQALNDAILSILITLS 885
            E YI VP+ F+CPISLDVM+SPVSLCTGVTYDR+SIQ WL+ G++TCPATMQ+L TK+FVPNLTL RLI  WS  +            P     V               ++ L+K+ +F    ++NR FL+    FV  +  ++ R ++++I ++  A+R+L+ I  +   +E+L+ L+L  +  +CL   L  ++ GNL+SKI S+++LD IS D +SK  + E + +L+ +   + + E  D +L +A LS LIT+S
Sbjct:    7 ETYITVPSFFKCPISLDVMRSPVSLCTGVTYDRASIQRWLDGGNNTCPATMQLLKTKDFVPNLTLQRLINIWSDSIGRRHNGDSPVLNPPSGREVPTKEEVNVLLERLMSLENLMKIVRFVKDSDSNREFLSKKMEFVPMLVDII-RTKKTKIELVIMAIRILDSIKVD---RERLSNLMLANDGGDCLTAILLAIQRGNLESKIESVRVLDWISFDAKSKLMIAERDGVLTEMMKSISITESSDPSLIEASLSFLITIS 262          
BLAST of DY263348 vs. ExPASy Swiss-Prot
Match: PUB28_ARATH (U-box domain-containing protein 28 OS=Arabidopsis thaliana GN=PUB28 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 3.099e-41
Identity = 105/261 (40.23%), Postives = 150/261 (57.47%), Query Frame = 1
Query:  136 MVRQELYIA-VPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWSHQLT------VPEQEVRVWXXXXXXXXXXXXXCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRR---SEIAVLESAVRVLNLIVNENGVKEKLNRLIL-NTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLS 885
            M   +LYI  VP  F+CPISLDVMKSPVSL TGVTYDR SIQ WL+ G++TCPATMQIL  KEFVPNLTLHRLI HWS  +        PE +                   D   K+ +FA   + NR FLA    FV  +  +++  R    S++ ++  AV++L++I  +   + +L+ LIL N  +CL  F  +++ GN   KI    +L+ I++D ESK  + + E L++ +   +    D +L +A LS+LI ++
Sbjct:    1 MRSDDLYITTVPCFFKCPISLDVMKSPVSLSTGVTYDRVSIQRWLDDGNNTCPATMQILQNKEFVPNLTLHRLIDHWSDSINRRADSESPESDTPTRDEINAAIERFRIE-NDARSKILRFARESDENREFLAGKDDFVAMLVDLISDSRNFSDSQLLLVGEAVKILSMIRRKIFDRRRLSNLILTNGGDCLTSFFLLIKRGNPKLKIDCSAVLEFIAVDAESKLIIAKGEGLVTEIIKLISSDSDSSLIEANLSLLIAIA 260          
BLAST of DY263348 vs. ExPASy Swiss-Prot
Match: PUB27_ARATH (U-box domain-containing protein 27 OS=Arabidopsis thaliana GN=PUB27 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 2.900e-39
Identity = 98/267 (36.70%), Postives = 150/267 (56.18%), Query Frame = 1
Query:  136 MVRQELYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWSH-----------QLTVPEQEVRVWXXXXXXXXXXXXXCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNR-----KRRSEIAVLESAVRVLNLIVNENGVKEKLNRLIL-NTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLS 885
            M + +L I VP  FRCPISLDVMKSPVSLCTGVTYDR+SIQ WL+ G++TCPATMQIL  K+F+PN TL RLI  WS            +L  P ++                   + L K+ +F    + NR FLA    FV+ +  ++N+        ++  V++ AV++L+ I ++   + + + LIL N  + L + + + + GN++ KI    +L+ I++D ESK  + E + L++ L   +    D +L ++ LS LI +S
Sbjct:    1 MRKDDLCITVPTFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDGGNNTCPATMQILQNKDFIPNRTLQRLIEIWSDSVRRRTCVESAELAAPTRDEIADAIDRVKIEKEERDDREVLSKIVRFGRESDDNRGFLAGKDDFVKLLVDLINQVDFETTSAAKSLVVQEAVKILSTIRSKVSDRRRFSNLILTNGRDRLSVIVYLFKTGNVELKIDCAGLLEFIAVDAESKLLIAERDGLITELMKSISKDSDLSLIESSLSCLIAIS 267          
BLAST of DY263348 vs. ExPASy Swiss-Prot
Match: PUB17_ARATH (U-box domain-containing protein 17 OS=Arabidopsis thaliana GN=PUB17 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 7.427e-19
Identity = 82/271 (30.26%), Postives = 117/271 (43.17%), Query Frame = 1
Query:  127 RKKMVRQEL---YIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHW--------SHQLTVPEQEVRVWXXXXXXXXXXXXXCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVL---NLIVNENGVKEKLN--------RLILNTYNCLPLFLEILREG-NLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSI 870
            RK  V QE+   +I VP  F CPISLD+M  PV + TG TYDR+SI  W+E GH TCP T Q+L     VPN  L  LI  W          + T    E                  V  L+K    A G +A +   A     + A  G  NR   +E   +    R+L   N I  EN V   LN          I+   +CL   + +L  G  ++++  +   L S+S  +E K+R+   +  + AL   L+    +   DA+ ++
Sbjct:  290 RKGFVAQEIGDTFITVPKDFVCPISLDLMTDPVIISTGQTYDRNSIARWIEEGHCTCPKTGQMLMDSRIVPNRALKNLIVQWCTASGISYESEFTDSPNESFASALPTKAAVEANKATVSILIKY--LADGSQAAQTVAAREIRLL-AKTGKENRAYIAEAGAIPHLCRLLTSENAIAQENSVTAMLNLSIYEKNKSRIMEEGDCLESIVSVLVSGLTVEAQENAAATLFSLSAVHEYKKRIAIVDQCVEALALLLQNGTPRGKKDAVTAL 557          
BLAST of DY263348 vs. ExPASy Swiss-Prot
Match: PUB15_ARATH (U-box domain-containing protein 15 OS=Arabidopsis thaliana GN=PUB15 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 6.287e-18
Identity = 74/266 (27.82%), Postives = 123/266 (46.24%), Query Frame = 1
Query:  133 KMVRQELYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHW--SHQLTVPEQEVRVWXXXXXXXXXXXXXCVDYL-----------VKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVR-VLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSV 888
            K + +   + +P+ F CPI+L++M  PV + TG TY++ SIQ W ++GH TCP T Q L      PN  L  LI  W   +   +PE+EV                 V+ L           VK  +         R L +  G +  +  +L+     +  + E+AV  +LNL ++E      +N+ +++    +P  +EIL  GN +++  S   L S+S+ +E+K   +   N +  L D L+    +   DA L+ L  LS+
Sbjct:  280 KAITKSTSLILPHEFLCPITLEIMLDPVIIATGQTYEKESIQKWFDAGHKTCPKTRQELDHLSLAPNFALKNLIMQWCEKNNFKIPEKEVS--PDSQNEQKDEVSLLVEALSSSQLEEQRRSVKQMRLLARENPENRVLIANAGAIPLLVQLLSYP---DSGIQENAVTTLLNLSIDE------VNKKLISNEGAIPNIIEILENGNREARENSAAALFSLSMLDENK-VTIGLSNGIPPLVDLLQHGTLRGKKDA-LTALFNLSL 532          
BLAST of DY263348 vs. ExPASy Swiss-Prot
Match: SL11_ORYSJ (Protein spotted leaf 11 OS=Oryza sativa subsp. japonica GN=SPL11 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 3.120e-17
Identity = 61/223 (27.35%), Postives = 107/223 (47.98%), Query Frame = 1
Query:  157 IAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHW--SHQLTVPEQEVRVWXXXXXXXXXXXXXCVDYLVKVA--------------KFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAV-RVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESK 774
            I +P+ FRCPISL++MK PV + TG TY+R+ I+ W+ SGH TCP T Q +ST    PN  L  LI+ W  ++ +  P++  +                   L K+               +      AN R   +  G +  +  +L+    S++   E AV  +LNL ++E+      N+  + +   +P  + +L+ G+++++  +   L S+S+ +E K
Sbjct:  271 ITIPDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKMSTSALTPNYVLRSLISQWCETNGMEPPKRSTQPNKPTPACSSSERANIDALLSKLCSPDTEEQRSAAAELRLLAKRNANNRICIAEAGAIPLLLSLLS---SSDLRTQEHAVTALLNLSIHED------NKASIISSGAVPSIVHVLKNGSMEARENAAATLFSLSVIDEYK 484          
BLAST of DY263348 vs. ExPASy Swiss-Prot
Match: SL11_ORYSI (Protein spotted leaf 11 OS=Oryza sativa subsp. indica GN=SPL11 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 3.120e-17
Identity = 61/223 (27.35%), Postives = 107/223 (47.98%), Query Frame = 1
Query:  157 IAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHW--SHQLTVPEQEVRVWXXXXXXXXXXXXXCVDYLVKVA--------------KFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAV-RVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESK 774
            I +P+ FRCPISL++MK PV + TG TY+R+ I+ W+ SGH TCP T Q +ST    PN  L  LI+ W  ++ +  P++  +                   L K+               +      AN R   +  G +  +  +L+    S++   E AV  +LNL ++E+      N+  + +   +P  + +L+ G+++++  +   L S+S+ +E K
Sbjct:  271 ITIPDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKMSTSALTPNYVLRSLISQWCETNGMEPPKRSTQPNKPTPACSSSERANIDALLSKLCSPDTEEQRSAAAELRLLAKRNANNRICIAEAGAIPLLLSLLS---SSDLRTQEHAVTALLNLSIHED------NKASIISSGAVPSIVHVLKNGSMEARENAAATLFSLSVIDEYK 484          
BLAST of DY263348 vs. ExPASy Swiss-Prot
Match: PUB14_ARATH (U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 6.951e-17
Identity = 74/268 (27.61%), Postives = 119/268 (44.40%), Query Frame = 1
Query:  163 VPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHW--SHQLTVPEQEVRVWXXXXXXXXXXXXXCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVL----------------ESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRFGQSSA 912
            +P  FRCPISL++MK PV + TG TY+RSSIQ WL++GH TCP + + L      PN  L  LIA W  S+ + +P+ +                     L  + K A G    +R  A     + A   V NR   +E   +                 S   +LNL +NE       N+  +     +   +E+L+ G+++++  +   L S+S+ +E+K   +     + AL   L+    +   DA  +I   L +Y+  +S A
Sbjct:  248 IPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGIELPQNQGSCRTTKIGGSSSSDCDRTFVLSLLEKLANGTTEQQRAAAGELRLL-AKRNVDNRVCIAEAGAIPLLVELLSSPDPRTQEHSVTALLNLSINEG------NKGAIVDAGAITDIVEVLKNGSMEARENAAATLFSLSVIDENK-VAIGAAGAIQALISLLEEGTRRGKKDAATAI-FNLCIYQGNKSRA 506          
BLAST of DY263348 vs. ExPASy Swiss-Prot
Match: PUB16_ARATH (U-box domain-containing protein 16 OS=Arabidopsis thaliana GN=PUB16 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.023e-16
Identity = 71/249 (28.51%), Postives = 113/249 (45.38%), Query Frame = 1
Query:  163 VPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWSHQLTVPEQ---EVRVWXXXXXXXXXXXXXCVDYLVKVAKFA--TGCEANRRFLASYGGFVEAVFG------VLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREG-NLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSIL 873
            +P  FRCPI+L++M+ PV + TG TYDR SI  W++SGH+TCP T Q+L     VPN  L  LI  W     +P +   +                  V +L++    A   G     R LA       A          L R   +E   L+  +  +  I+N + +++   R I+ T   L   +E+LR G   ++K  +   L S++  +  +RR+     ++S L D  K     +  DA+++IL
Sbjct:  274 IPADFRCPITLELMRDPVVVATGQTYDRESIDLWIQSGHNTCPKTGQVLKHTSLVPNRALKNLIVLWCRDQKIPFELYGDGGGEPAPCKEAVEFTKMMVSFLIEKLSVADSNGVVFELRALAKSDTVARACIAEAGAIPKLVRYLATECPSLQ--INAVTTILNLSILEQNKTR-IMETDGALNGVIEVLRSGATWEAKANAAATLFSLAGVSAYRRRLGRKARVVSGLVDLAKQGPTSSKRDALVAIL 519          
BLAST of DY263348 vs. ExPASy Swiss-Prot
Match: PUB11_ARATH (U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 2.641e-16
Identity = 72/271 (26.57%), Postives = 123/271 (45.39%), Query Frame = 1
Query:  157 IAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHW--SHQLTVPEQEVR--------------VWXXXXXXXXXXXXXCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVR-VLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRFGQSSARR 918
            + +P  F CP+SL++MK PV + TG TY+R+ IQ W++ G+ TCP T Q L      PN  L  LI+ W   H +  P   +               +               V  +  ++K +T    NR  +A  G    A+  ++N     ++A  E+A+  VLNL + EN      N+ ++     +   +++LR G ++++  +   L S+SL +E+K  ++     + AL D L+    +   DA  + L  L +Y   +  A R
Sbjct:  239 LTIPVDFLCPVSLELMKDPVIVATGQTYERAYIQRWIDCGNLTCPKTQQKLENFTLTPNYVLRSLISRWCAEHNIEQPAGYINGRTKNSGDMSVIRALVQRLSSRSTEDRRNAVSEIRSLSKRSTD---NRILIAEAG----AIPVLVNLLTSEDVATQENAITCVLNLSIYEN------NKELIMFAGAVTSIVQVLRAGTMEARENAAATLFSLSLADENK-IIIGGSGAIPALVDLLENGTPRGKKDA-ATALFNLCIYHGNKGRAVR 494          
The following BLAST results are available for this feature:
BLAST of DY263348 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
PUB29_ARATH2.293e-4440.38U-box domain-containing protein 29 OS=Arabidopsis ... [more]
PUB28_ARATH3.099e-4140.23U-box domain-containing protein 28 OS=Arabidopsis ... [more]
PUB27_ARATH2.900e-3936.70U-box domain-containing protein 27 OS=Arabidopsis ... [more]
PUB17_ARATH7.427e-1930.26U-box domain-containing protein 17 OS=Arabidopsis ... [more]
PUB15_ARATH6.287e-1827.82U-box domain-containing protein 15 OS=Arabidopsis ... [more]
SL11_ORYSJ3.120e-1727.35Protein spotted leaf 11 OS=Oryza sativa subsp. jap... [more]
SL11_ORYSI3.120e-1727.35Protein spotted leaf 11 OS=Oryza sativa subsp. ind... [more]
PUB14_ARATH6.951e-1727.61U-box domain-containing protein 14 OS=Arabidopsis ... [more]
PUB16_ARATH2.023e-1628.51U-box domain-containing protein 16 OS=Arabidopsis ... [more]
PUB11_ARATH2.641e-1626.57U-box domain-containing protein 11 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA11CA10RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263348 ID=DY263348; Name=DY263348; organism=Citrus clementina; type=EST; length=1311bp
TGACTCCTTCCTCTTCAAAACTCCTTCCCCCCAGCACTCCATCTTCTCAA
CTCGCTCTCTAGTTCTCTCTCTGAAATCATCTGTTTCTATCTGTAGAGAA
GCCAAACCCAAACAAAGAATTAAAAGAGAAAAAAAATGGTGAGACAAGAA
CTTTACATAGCAGTACCGAATTTATTCCGGTGCCCGATTTCCTTGGACGT
AATGAAGTCTCCGGTGAGTCTCTGCACAGGTGTCACCTACGATCGCTCCA
GCATCCAGCACTGGCTCGAATCCGGCCACGACACTTGCCCCGCCACCATG
CAAATCCTGTCCACTAAGGAATTCGTTCCGAACCTCACTCTTCACCGTCT
CATCGCTCACTGGTCTCACCAATTGACGGTGCCGGAGCAGGAGGTTAGAG
TTTGGATCGAAAAGATCAAAAGTGAGAACGAGAGTGAAAATAGTTGCGTT
GATTATCTGGTCAAAGTCGCAAAGTTTGCGACGGGTTGTGAAGCGAATCG
GAGGTTTTTGGCGAGTTATGGCGGTTTTGTGGAAGCTGTTTTTGGCGTTT
TGAATAGAAAACGACGCTCGGAAATTGCCGTTTTGGAGTCGGCTGTAAGG
GTTTTGAACTTGATTGTGAATGAAAATGGAGTCAAAGAGAAATTGAATCG
TTTGATTCTCAATACTTATAATTGCTTACCTTTATTTCTCGAAATTCTCC
GAGAAGGAAACTTGGATTCAAAGATCGGATCGATTAAGATACTAGATTCG
ATTTCACTCGACAACGAATCGAAACGCAGAGTTTTGGAAACAGAGAACCT
CCTCTCCGCACTGTTCGATTACCTCAAGCTAGCAGAGGATCAAGCTCTAA
ACGACGCCATTTTATCAATCTTGATCACTTTGTCAGTCTATCGGTTCGGT
CAAAGCTCAGCTCGTCGAACTCGGAATGGTTCAAATCCTCACAGAATTCT
CTCCGAATTCAGGAACAAATCCTGACTGTGGAAAAATCAATAAAATGTTA
TCGATAGTTGCACGTGTAACAAGGGGCGCTTGGGCTTTAACCAAAAAACC
AGTTGCGCCGGAAGGATGGGGGGAAAAAAGGGATAAGGGGGGGAAAAAGG
CCAAGGGAAGATGCGGTGGGGGGGGAAAAGGGGGGATTGGGTTTGGGTGG
AACAAAAAATGGCGAGGGGGAAAAAAAAGCCCGGGGGCCAAAAACACAAG
GGGGGTGGAACCCAAAACCTGCGTCCTGTTTGGGATTGTTAAAAAAGAAA
AAAAAGAAAAGGGGGGGGTTGTGGGGGGGGAAAAAAAAGAAAGGGGGGGG
CGGGAAAAAAA
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