DY263349

Overview
NameDY263349
Unique NameDY263349
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1124
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY263349 vs. ExPASy Swiss-Prot
Match: Y4466_ARATH (ZF-HD homeobox protein At4g24660 OS=Arabidopsis thaliana GN=At4g24660 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.802e-23
Identity = 72/185 (38.92%), Postives = 85/185 (45.95%), Query Frame = 3 
Query:  489 IRYRECLKNHAACIGGNIFDGCGEFMPSGDEGTLEALKCAACECHRNFHRKEIDGETAQLISTGRRSAVXXXXXXXXXXXXXXXXXXXXXXXXQKYSISRHTMSPSSAIVAPMNVAFGGGISESSSEDLSNVLHSEGVLQHQXXXXXXXXXXFVLSKNRFRTKFTQEQKGKMMEFAEKVWWALFK 1043
            IRYRECLKNHA  IGG+  DGC EFMPSG++GTL+ALKCAAC CHRNFHRKE +         GR   V                               H  SP++    P         +    ED SN   S G                  +  RFRTKFT EQK KM+ FAE++ W + K
Sbjct:   47 IRYRECLKNHAVNIGGHAVDGCCEFMPSGEDGTLDALKCAACGCHRNFHRKETES------IGGRAHRVPTYYNRPPQPHQPPGYL--------------HLTSPAAPYRPP--------AASGDEEDTSNPSSSGG------------------TTKRFRTKFTAEQKEKMLAFAERLGWRIQK 185
[Close]
BLAST of DY263349 vs. ExPASy Swiss-Prot
Match: Y5541_ARATH (ZF-HD homeobox protein At5g65410 OS=Arabidopsis thaliana GN=At5g65410 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 5.079e-18
Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 3 
Query:  492 RYRECLKNHAACIGGNIFDGCGEFMPSGDEGTLEALKCAACECHRNFHRKEI 647
            R+RECLKN A  IGG+  DGCGEFMP+G EGT++ALKCAAC CHRNFHRKE+
Sbjct:   74 RFRECLKNQAVNIGGHAVDGCGEFMPAGIEGTIDALKCAACGCHRNFHRKEL 125
The following BLAST results are available for this feature:
BLAST of DY263349 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y4466_ARATH1.802e-2338.92ZF-HD homeobox protein At4g24660 OS=Arabidopsis th... [more]
Y5541_ARATH5.079e-1875.00ZF-HD homeobox protein At5g65410 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA11CA11RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263349 ID=DY263349; Name=DY263349; organism=Citrus clementina; type=EST; length=1124bp
CTTTTATTTCTCTCTTGCTATAATTTAGAGCCTTTGGAGAAGAAGATGAT
GCTGCTGCTGATGGGTATAAATAAAGCTGGAGCTGCTGCGGCCTTGCTGA
TGCTTTGCTAGCTGTTGGTTGTGTGTGTGTCTCTCTCTCTCCAGCTGTGA
CTCTGCAGCACCACAATAATAGTTATTAGCGTAACAGATCAGGACATTAA
TTGTATATAGAATTGGAGAGGGTCGGGGTTAAGGGGTTTGTATTTAGCAG
TATGATGATGGAGATTAAGCAAGAAAATGAAACAAAAACTCCAAGAAGAG
ATGGGAATAATGACAATGGTACCGCAGTGTACAGTTTCAATACTCATCAA
ACCCTAGATCATAATTTACAACGCCACCAGCAGCAGCAGCAAGCGAGATC
TCCAAACCCAGATCGAGTTACTAGTGTGATTGGTGCCGCAATTGCACCAA
TCTCCGCAGGATCCAACTCCAAACCACCCATTAACGTGATCCGGTATCGA
GAATGCCTCAAGAACCACGCAGCATGCATTGGTGGCAACATCTTCGATGG
GTGCGGTGAGTTCATGCCTAGCGGGGATGAAGGCACATTGGAAGCCTTGA
AATGCGCGGCTTGTGAGTGCCACAGAAACTTTCACCGCAAAGAGATCGAT
GGAGAGACTGCCCAATTGATCAGCACCGGTAGAAGATCGGCTGTTATGCT
GAATCCACTGCAGCTTCCTCCACCGTTGCCATCTCCAACGATGATGCATC
ATCATCATCATCATCATCAGAAGTATTCGATAAGCAGGCACACGATGAGC
CCATCAAGTGCAATTGTTGCACCAATGAATGTGGCATTTGGTGGTGGGAT
TAGTGAGTCTTCAAGTGAAGATCTTAGTAATGTGCTTCATTCTGAAGGAG
TGCTACAGCATCAGCCACCAGCGGCACCCCCACCGCCCCCTCCTTTTGTT
TTGTCAAAAAACCGCTTCCGAACCAAGTTCACGCAGGAACAAAAGGGCAA
AATGATGGAATTTGCTGAAAAAGTTTGGTGGGCGCTTTTCAAAACCAAGA
CAAATAATCAATTTACAAATTTTTGGGCTTAATTTTGGAATTTAAAAAGC
AATGTTTTTCAAAGTTTGGGAATC
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