DY263352

Overview
NameDY263352
Unique NameDY263352
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1204
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263352 vs. ExPASy Swiss-Prot
Match: NDH1_YEAST (External NADH-ubiquinone oxidoreductase 1, mitochondrial OS=Saccharomyces cerevisiae GN=NDE1 PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 4.722e-41
Identity = 92/198 (46.46%), Postives = 124/198 (62.63%), Query Frame = 2
Query:  440 KKRVVILGSGWAAVGVLRELDNEAYEVVVVSPRNYFLFTPLLPSVTVGTLDSRSVVESIRRTFKRAGASDVQFLNAECTAINHQNNSITCNDVSGDGAVQSFDLEYDQLIVAVGCDNTTFGTPGVEKYCHFLKELNDARRIRQQITQNFEVAHLPGQPEEEIKRLLHFLVVRGRPTGVKFAPEFQNLRGKELEKVVPE 1033
            +K +VILGSGW +V +L+ LD   Y VVVVSPRNYFLFTPLLPS  VGT++ +S+VE +R T  R    +V +  AE   ++ +N +I     S        DL+YD L+V VG    TFGTPGV +Y  FLKE++DA+ IR +I  + E A      + E  RLL F+VV G PTGV+FA E ++   ++L K +PE
Sbjct:  112 RKTLVILGSGWGSVSLLKNLDTTLYNVVVVSPRNYFLFTPLLPSTPVGTIELKSIVEPVR-TIARRSHGEVHYYEAEAYDVDPENKTIKVKS-SAKNNDYDLDLKYDYLVVGVGAQPNTFGTPGVYEYSSFLKEISDAQEIRLKIMSSIEKAASLSPKDPERARLLSFVVVGGGPTGVEFAAELRDYVDQDLRKWMPE 307          
BLAST of DY263352 vs. ExPASy Swiss-Prot
Match: NDH_DICDI (Probable NADH dehydrogenase OS=Dictyostelium discoideum GN=DDB_G0270104 PE=3 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 2.194e-38
Identity = 84/216 (38.89%), Postives = 135/216 (62.50%), Query Frame = 2
Query:  383 VDRAVQREQQGGADKPARTKKRVVILGSGWAAVGVLRELDNEAYEVVVVSPRNYFLFTPLLPSVTVGTLDSRSVVESIRRTFKRAGASDVQFLNAECTAINHQNNSITCNDVSGDGAVQSFDLEYDQLIVAVGCDNTTFGTPGVEKYCHFLKELNDARRIRQQITQNFEVAHLPGQPEEEIKRLLHFLVVRGRPTGVKFAPEFQNLRGKELEKVVP 1030
            +++A+ R Q+ G        ++++ILG GW +   L+ L++  Y++ V+SPRN+FLFTPLL S  VGTL+ RS+ E +R T      ++ +++ A  T+IN +NNS+       +   + F+++YD+L++ VG  N TFG  GVE+  +FLKEL+ AR IRQ+I + FE A LP    EE +RLL F++V G  TG++F  E  +   ++L ++ P
Sbjct:   23 LEKAIIRRQKRGK---VIENEKLIILGCGWGSYSFLKNLNSIKYDITVISPRNHFLFTPLLTSSAVGTLEFRSIAEPVRTT---RDINEFKYIQASVTSINPENNSVLVKSTFHNE--KPFEMKYDKLVIGVGSRNNTFGIKGVEENANFLKELHHAREIRQKIIECFERASLPDVSTEERERLLSFVIVGGGATGIEFTSELNDFFSEDLSRLFP 230          
BLAST of DY263352 vs. ExPASy Swiss-Prot
Match: NDH2_YEAST (External NADH-ubiquinone oxidoreductase 2, mitochondrial OS=Saccharomyces cerevisiae GN=NDE2 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 2.865e-38
Identity = 91/220 (41.36%), Postives = 130/220 (59.09%), Query Frame = 2
Query:  374 NPPVDRAVQREQQGGADKPARTKKRVVILGSGWAAVGVLRELDNEAYEVVVVSPRNYFLFTPLLPSVTVGTLDSRSVVESIRRTFKRAGASDVQFLNAECTAINHQNNSITCNDVSGDGAVQSFDLEYDQLIVAVGCDNTTFGTPGVEKYCHFLKELNDARRIRQQITQNFEVAHLPGQPEEEIKRLLHFLVVRGRPTGVKFAPEFQNLRGKELEKVVPE 1033
            NPP     ++  Q  A      KK +VILG+GW A+ +L++LD   Y V VVSPR++FLFTPLLPS  VGT++ +S+VE +R   +R    +V ++ AE   ++ +   +    VS D    S  L YD L+V+VG   TTF  PGV    +FLKE+ DA+ IR ++ +  E A      + E KRLL F+VV G PTGV+FA E Q+   ++L K +P+
Sbjct:   80 NPP-----KQVPQSTAFANGLKKKELVILGTGWGAISLLKKLDTSLYNVTVVSPRSFFLFTPLLPSTPVGTIEMKSIVEPVRSIARRT-PGEVHYIEAEALDVDPKAKKVMVQSVSEDEYFVS-SLSYDYLVVSVGAKTTTFNIPGVYGNANFLKEIEDAQNIRMKLMKTIEQASSFPVNDPERKRLLTFVVVGGGPTGVEFAAELQDYINQDLRKWMPD 292          
BLAST of DY263352 vs. ExPASy Swiss-Prot
Match: NDI1_YEAST (Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial OS=Saccharomyces cerevisiae GN=NDI1 PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 4.137e-37
Identity = 86/209 (41.15%), Postives = 123/209 (58.85%), Query Frame = 2
Query:  440 KKRVVILGSGWAAVGVLRELDNEAYEVVVVSPRNYFLFTPLLPSVTVGTLDSRSVVESIRRTFKRAGASDVQFLNAECTAINHQNNSITCNDVS------------GDGAVQSFDLEYDQLIVAVGCDNTTFGTPGVEKYCHFLKELNDARRIRQQITQNFEVAHLPGQPEEEIKRLLHFLVVRGRPTGVKFAPEFQNLRGKELEKVVP 1030
            K  V+ILGSGW A+  L+ +D + Y V ++SPR+YFLFTPLLPS  VGT+D +S++E I   F      +V +  AE T+IN   N++T   +S            G    +  +++YD LI AVG +  TFG PGV  Y HFLKE+ ++  IR+    N E A+L  + + E +RLL  +VV G PTGV+ A E Q+   ++L K +P
Sbjct:   53 KPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPIVN-FALKKKGNVTYYEAEATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTFGIPGVTDYGHFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRKFLP 260          
BLAST of DY263352 vs. ExPASy Swiss-Prot
Match: NDH1_SCHPO (Probable NADH-ubiquinone oxidoreductase C3A11.07, mitochondrial OS=Schizosaccharomyces pombe GN=SPAC3A11.07 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.331e-35
Identity = 79/202 (39.11%), Postives = 117/202 (57.92%), Query Frame = 2
Query:  428 PARTKKRVVILGSGWAAVGVLRELDNEAYEVVVVSPRNYFLFTPLLPSVTVGTLDSRSVVESIRRTFKRAGASDVQFLNAECTAINHQNNSITCNDVSGDGAVQSFDLEYDQLIVAVGCDNTTFGTPGVEKYCHFLKELNDARRIRQQITQNFEVAHLPGQPEEEIKRLLHFLVVRGRPTGVKFAPEFQNLRGKELEKVVPE 1033
            P  +KK +V+LG+GW A  +LR +D   + V+VVSPRNYFLFT LLPS   G++ +RS+V+ IR   +      V+F  AECT ++     I     + DG     +++YD L+ + G +  TF  PG+ +Y  FLKE+ DA++IR +I    E A     P E  +R +H +VV G PTG++FA E  +    +L+   PE
Sbjct:   87 PDPSKKTLVVLGAGWGATSILRTIDTSLFNVIVVSPRNYFLFTSLLPSTATGSVHTRSIVQPIRYMLRHKSCY-VKFYEAECTDVDADKKVIHIKKTTTDGVDLEQEIKYDYLVCSHGAETQTFNIPGIAEYGCFLKEIWDAQKIRARILHCLEQAQFKDLPAETRRRYVHTVVVGGGPTGMEFAGEMADFIEDDLKSWYPE 287          
BLAST of DY263352 vs. ExPASy Swiss-Prot
Match: NDH2_SCHPO (Probable NADH-ubiquinone oxidoreductase C947.15c, mitochondrial OS=Schizosaccharomyces pombe GN=SPBC947.15c PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 6.182e-33
Identity = 85/223 (38.12%), Postives = 121/223 (54.26%), Query Frame = 2
Query:  440 KKRVVILGSGWAAVGVLRELDNEAYEVVVVSPRNYFLFTPLLPSVTVGTLDSRSVVESIRRTFK-RAGASDVQFLNAECTAINHQNNSITCNDVSGDGAVQSFDLEYDQLIVAVGCDNTTFGTPGVEKYCHFLKELNDARRIRQQITQNFE-VAHLPGQPEEEIKRLLHFLVVRGRPTGVKFAPEFQNLRGKELEKVVPEGRLTRH-CFLHILPKTRPQLLKN 1099
            KK +V+LGSGW AV  ++ LD   Y + +VSPR++FLFTP+LPS TVGTL   S+ E I   FK +   S++    AECTAI+     +T    +     +   + YD L+ A+G  N TFG  GV  +  FLKE  DA+++  +I +  E V        EE  RLLH  VV G PTG++FA E Q+    +++ + PE +   H   +   P   P   K+
Sbjct:   90 KKNIVVLGSGWGAVAAIKNLDPSLYNITLVSPRDHFLFTPMLPSCTVGTLRLPSITEPIVALFKGKIDPSNIH--QAECTAIDTSAKKVTIRGTTEANEGKEAVIPYDTLVFAIGAGNQTFGIQGVRDHGCFLKEAGDAKKVFNRIFEILEQVRFNKDLSPEERARLLHITVVGGGPTGMEFAAEMQDFIDNDVKDMFPELQKDIHVTLIEAAPGVLPMFTKS 310          
BLAST of DY263352 vs. ExPASy Swiss-Prot
Match: Y2010_STAHJ (NADH dehydrogenase-like protein SH2010 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=SH2010 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 6.651e-11
Identity = 55/209 (26.32%), Postives = 97/209 (46.41%), Query Frame = 2
Query:  431 ARTKKRVVILGSGWAAVGVL----RELDNEAYEVVVVSPRNYFLFTPLLPSVTVGTLDSRSVVESIRRTFKRAGASDVQFLNAECTAINHQNNSITCNDVSGDGAVQSFDLEYDQLIVAVGCDNTTFGTPGVEKYCHFLKELNDARRIRQQITQNFEVAHLPGQPEEEIKRLLHFLVVRGRPTGVKF-------APEFQNLRGKELEKV 1024
            A+ +K+V++LG+G+A +  +    +EL  +  ++ +++   Y      L   + GTL+   ++  I    K      V+F+NAE T I+     +  N    D         YD L+VA+G ++ TFG  G++ Y   ++ +  AR++ + I   F  A+     E++ K L   LV     TG++F        PE  N  G +  KV
Sbjct:    2 AQDRKKVLVLGAGYAGLQTVTKLQKELSADEADITLINKNKYHYEATWLHEASAGTLNYEDLIYPIESVIKE---DKVKFINAEVTKIDRNAKKVETNHGIYD---------YDILVVALGFESETFGINGMKDYAFQIENIETARKLSRHIEDKF--ANYAASKEKDDKDLA-ILVGGAGFTGIEFLGELTERIPELCNKYGVDQNKV 195          
The following BLAST results are available for this feature:
BLAST of DY263352 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
NDH1_YEAST4.722e-4146.46External NADH-ubiquinone oxidoreductase 1, mitocho... [more]
NDH_DICDI2.194e-3838.89Probable NADH dehydrogenase OS=Dictyostelium disco... [more]
NDH2_YEAST2.865e-3841.36External NADH-ubiquinone oxidoreductase 2, mitocho... [more]
NDI1_YEAST4.137e-3741.15Rotenone-insensitive NADH-ubiquinone oxidoreductas... [more]
NDH1_SCHPO1.331e-3539.11Probable NADH-ubiquinone oxidoreductase C3A11.07, ... [more]
NDH2_SCHPO6.182e-3338.12Probable NADH-ubiquinone oxidoreductase C947.15c, ... [more]
Y2010_STAHJ6.651e-1126.32NADH dehydrogenase-like protein SH2010 OS=Staphylo... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA11CB02RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263352 ID=DY263352; Name=DY263352; organism=Citrus clementina; type=EST; length=1204bp
AAGAAGAAGAAAAATGAGGGCAGCCTGTTCAAGAAGTCTCGTCGCGCCTG
GTTGTGCTGCTGGCGGTCGTGCTGCTACCACTGCGGGCAGTAAGCTCTTC
TGTGGCGGTGGCGGTGGCGGTTGGGTGCAGCAGCGTAGAGCTATCGCCAC
CAGCAGCAGCGCAGGTGGGAGAGGTGGTTGGCGCGGGGTGGGAACGGTGG
CTGGGCTGGTGGTCGCGGCTGGCGCGCTTGTTGCGGGCGGCGCGGTTGCG
CTGGAGGGCCTCCAGGACGACGAAAACGACTCCCTCCTCTCCCGCACGCC
CTTCGTGAGTGCGGTGCGTGCCGAAGAGAAGACCACGCCCAACGCCAAGG
CCCCGCCCTCCATCGTCTCGCAGAACCCGCCGGTCGATAGGGCGGTCCAG
CGTGAACAGCAGGGAGGCGCCGACAAGCCCGCGCGCACCAAGAAGAGGGT
AGTCATCCTCGGCTCGGGCTGGGCGGCCGTCGGTGTGCTGCGGGAGCTCG
ACAACGAAGCCTACGAGGTTGTGGTTGTGTCGCCGCGCAACTACTTCCTG
TTCACCCCGCTCCTTCCCTCCGTCACCGTTGGCACGCTCGACTCGAGGAG
TGTTGTTGAGTCGATCCGACGCACCTTCAAGAGGGCCGGCGCCTCGGACG
TGCAGTTCCTCAATGCCGAGTGCACGGCCATCAACCACCAGAACAACAGC
ATCACCTGCAACGATGTGAGTGGTGACGGCGCGGTCCAATCGTTCGATCT
CGAGTACGACCAGCTGATCGTGGCAGTGGGCTGCGACAACACTACCTTTG
GCACGCCCGGCGTGGAGAAGTACTGCCACTTCCTCAAGGAGCTGAATGAC
GCCCGCCGGATCAGGCAGCAGATTACGCAGAACTTTGAGGTCGCCCACCT
GCCCGGCCAACCGGAAGAAGAGATCAAGCGTCTCCTGCACTTCCTCGTGG
TCCGCGGAAGACCCACGGGAGTGAAGTTCGCACCTGAATTCCAGAATTTG
CGGGGGAAAGAATTGGAAAAAGTGGTTCCCGAAGGTCGCTTAACCAGACA
CTGTTTCCTTCACATTCTTCCAAAAACGCGGCCCCAACTTCTCAAAAACC
CACAAAAGCCCAAAAATTTCAAATATGGCCCAAAAAAAAAATTTTGGCGC
AAATAAAACACCAAACCCCTCACCCCCTTTTTGCGCGGGGTCCTCCCCCC
GGGG
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