DY263361

Overview
NameDY263361
Unique NameDY263361
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1201
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263361 vs. ExPASy Swiss-Prot
Match: FBK9_ARATH (F-box/kelch-repeat protein At1g23390 OS=Arabidopsis thaliana GN=At1g23390 PE=2 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 1.600e-65
Identity = 135/272 (49.63%), Postives = 179/272 (65.81%), Query Frame = 3
Query:   33 GDSGINTNNSIVHGDILEAILSQVPLIDLASACYVSRSWNRAVFSSLRRVNKIKPWLLLHTQSQRTMAPYL--TTAHAYDARSHVWIEIKN-NQPSSFDFLLRSSHSTLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKIVVAGGACDFEDDPLAVEMYSVDT--RTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGVTVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSFKIW 833
            GD G     S + GDILE+ILS +PL+DL SAC VS+SWNRAVF SLRR+ K  PWL ++  +QR   PY   T A AYD +S  WIE+   + P     + RSSHSTLLY LSP++ SFS D  HL W HV  PRVWR DP+VA+VG  +++AGG CDFE+D  AVE++ +++    WE C+SMP  L +SA+STWLSVAV+S ++YVTEK SGVT SF+P T+ W+    L     E  ++   I F+ +RLI  G+ G+  +    ++W
Sbjct:   11 GDFG--EEESSIDGDILESILSYLPLLDLDSACQVSKSWNRAVFYSLRRL-KTMPWLFVY--NQRNSPPYTMATMAMAYDPKSEAWIELNTASSPVEHVSVARSSHSTLLYALSPARFSFSTDAFHLTWQHVAPPRVWRIDPIVAVVGRSLIIAGGVCDFEEDRFAVELFDIESGDGAWERCESMPDFLYESASSTWLSVAVSSEKMYVTEKRSGVTCSFNPVTRSWTKLLDL--CPGECSLYSRSIGFSVNRLIMAGIIGDEYNPTGIELW 275          
BLAST of DY263361 vs. ExPASy Swiss-Prot
Match: FBK69_ARATH (F-box/kelch-repeat protein At3g24760 OS=Arabidopsis thaliana GN=At3g24760 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 4.573e-12
Identity = 72/283 (25.44%), Postives = 121/283 (42.76%), Query Frame = 3
Query:   27 PEGDSGINTNNSIVHGDILEAILSQVPLIDLASACYVSRSWNRAVFS---SLRRVNKIKPWLLLHTQSQRTMAPYLTTAHAYDARSHVWIEIKNNQPSSFDFLLRSSHSTLLYTLSPSKLSFSFDP-LHLAWHHVDAPRVWRTDPVVALV-----GDKIVVAGGACDFE-----DDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGVTVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSFKIW 833
            PE +S    N +I   D+ E+IL  +P+  L     VS+ W   + S   S        PWL L        + +   + A+D  S+ W+ +  +  SS D L+ S+    L+T +P    FSF P L   W      R  R +P++ +        K+++ GG+         ++ LAV++Y     +WE+C  +PA  +       L+ A+  R+ YV + YS    SF   +  WS    L+       + ++ +   N  L+  G+ G      SF +W
Sbjct:    6 PEIESSTFNNLNI---DVTESILYHLPIPSLVRFTLVSKQWRSLITSLPPSPSPSPSSPPWLFLF--GIHNTSSFHNQSFAFDPLSNTWLRLPPSSSSS-DHLVGSNR--FLFTTAPR---FSFSPILKPNWRFTSPVRFPRINPLLTVFTTLSNSSKLILVGGSSRIGGLVDIEERLAVQIYDPVLDSWELCSPLPADFRSGQDHQTLTSALFKRRFYVFDNYSCFISSFCLDSYTWSDVQTLK----PPGLSFAYLNSCNGMLVLGGMCG-----FSFNLW 268          
The following BLAST results are available for this feature:
BLAST of DY263361 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
FBK9_ARATH1.600e-6549.63F-box/kelch-repeat protein At1g23390 OS=Arabidopsi... [more]
FBK69_ARATH4.573e-1225.44F-box/kelch-repeat protein At3g24760 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA11CB12RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263361 ID=DY263361; Name=DY263361; organism=Citrus clementina; type=EST; length=1201bp
CGCATTTGGATAAACAAGCAGCGGCCCCAGAAGGTGATAGTGGCATTAAT
ACTAATAATAGTATTGTCCATGGAGACATCTTAGAGGCCATACTGTCGCA
GGTGCCACTGATCGACCTCGCCTCTGCTTGTTACGTGTCTAGATCATGGA
ACCGCGCCGTCTTCTCTTCTCTCCGTCGCGTCAACAAAATCAAGCCTTGG
CTGCTGCTGCATACGCAGTCGCAGAGAACTATGGCCCCCTACCTCACAAC
CGCGCACGCTTACGATGCCCGCTCCCACGTGTGGATCGAAATCAAGAACA
ATCAACCCTCGTCCTTCGACTTCCTCCTCCGCTCCTCCCATTCCACGCTT
CTCTACACCCTCTCGCCTTCCAAGCTCTCCTTCTCCTTTGACCCCCTCCA
TCTCGCCTGGCACCACGTGGACGCCCCTCGCGTGTGGAGGACCGACCCCG
TTGTCGCCTTGGTCGGAGACAAAATAGTCGTCGCCGGCGGGGCCTGCGAC
TTCGAAGACGACCCGCTGGCCGTGGAGATGTACAGCGTCGACACTCGCAC
GTGGGAAATCTGCCAAAGCATGCCAGCCGTTCTCAAAGACTCAGCTGCCT
CAACTTGGCTGTCGGTTGCGGTAAATTCTCGTCAACTTTACGTGACTGAG
AAGTACTCGGGCGTTACGGTCTCATTCGACCCCAGTACTAAGGGCTGGTC
CGGACCGTTCCATTTACGTCAATTTGATCACGAGAAGAAGGTATTTTATT
CCGTGATCACGTTTGCAAACGACCGTTTGATTGCGGTGGGGCTCACTGGG
GAAGCTGAGGACGTCAAGAGTTTTAAGATATGGCCAGGAAATATAAAAGG
GGGGGTCGTTGGAAGAGTTGAAGGAGATAGGTGAGAATGCAAAAGCGCTT
TTTGAGAACTGAAAGGGAATGAAAAAATCTGCAGTGGAAATGGAAACCCT
TTCTCTACTAACCGTCCGTGTAACGTCCATGGGAAATTAAGTGTACTTAA
ATATCCTTTCAAATTCCAAAATTTGGTGGTTTTCCAAAATTGGTGAAAGG
CGGGGGAGACCAATTGTAAATGGGAATGAAAAAAAAAAAGGGGGGGGGGG
GACGGGGGAAAAATGCTAAAATAAAAGGGGGGGGTTAATTTTTTAAAGTT
TTTCTAACCTTCCGGTCTCCCGAGAAATTTTGCAAAAGGGGTTTTTTTTT
T
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