DY263908

Overview
NameDY263908
Unique NameDY263908
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1344
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263908 vs. ExPASy Swiss-Prot
Match: STLP2_ARATH (SEC12-like protein 2 OS=Arabidopsis thaliana GN=STL2P PE=1 SV=4)

HSP 1 Score: 255.373 bits (651), Expect = 5.785e-67
Identity = 160/390 (41.03%), Postives = 221/390 (56.67%), Query Frame = 2
Query:   20 SRNEESHNLQKYGVPLYGAGWVPYDQVIRSTHXXXXXXXXXXXXXXXHGSKDEAVADKSDDIRRNYYVVLXXXXXXXNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLCQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGP-GRVWDLASSAVTTPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTPLXKRIAQ---SK*SVNPFFLHVSADASSLQCITFRLPRFNCLKTPKLSIEL*LLH*IDDGLKCNGTASGNIFIKDSTNLQGSKGV*KTHLGKMDSFGFS*EIKGL 1177
            +   +  N+Q YGVP+Y A W+P +  +RS                   S+D+  +  S    R+  +VL        SGI N +L+   D  +NSLS+QP+  L   SDLPYRMA+HP   G+ICAL NSC+LF W+++ + E  + G   SE+V+ +L +VGQQLAL F+ EG++ AAG+E+G LRVFKWPS+  +LNES+AH+SVK L+FS  G+FLVSLG  GP  RVWD+ +SA    L+KE DE+FASCRFS  +  + VLYIAA T+RG SI+T +T L KR       K S++ F  +VSAD   L                                   GT  G++ I +ST +Q  + V K HLG + +  FS + +GL
Sbjct:    6 TETNQPSNMQTYGVPIYAADWIP-EVDVRSK-----------IIMDPEKSEDDDESSSSSSSSRSC-IVLSGGGGEGRSGISNVILICRVDLNTNSLSEQPLGRLVVGSDLPYRMAVHPREGGLICALPNSCKLFHWEDIMSREDNQAGE--SEEVIKELRDVGQQLALAFNPEGSVLAAGAEDGTLRVFKWPSMNTLLNESQAHSSVKCLTFSESGQFLVSLG--GPVCRVWDVNASAAVASLSKEKDEMFASCRFSVDSAGNEVLYIAANTERGGSIITCDTKLWKRKWSKPIKKNSISAF--NVSADGKLLAI---------------------------------GTLEGDVLILESTRMQTIQVVKKAHLGLVTALTFSPDSRGL 343          
BLAST of DY263908 vs. ExPASy Swiss-Prot
Match: PHF1_ARATH (SEC12-like protein 1 OS=Arabidopsis thaliana GN=PHF1 PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 5.668e-22
Identity = 68/234 (29.06%), Postives = 111/234 (47.44%), Query Frame = 2
Query:  218 YVVLXXXXXXXNSGIRNAVLLSHFDF--ASNSLSDQPVAE--LRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLCQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVTTPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGA----SIVTWNTPLXKRIAQ 892
            +V++        S + +  LL+ F F   + SLS  P+A   L+     P  +++HP GD  +C+  +  C+LFE            G+ I  K L  L+N G Q  + F  +G+  A G  +G LR+ +WP+L +IL+E +AH S++D+ FS D +FL +    G  R+W        + L +  DE    CRFS    + ++   A   D        I TW     K++++
Sbjct:   27 WVLIAKASKRRGSSVSSPALLNIFSFDPITASLSSSPLATHTLKDSDGDPVAVSVHPGGDYFVCSTSKGGCKLFELVGGAT------GITILAKELLPLQNAGLQKCMAFSFDGSKLAVGGVDGCLRIMEWPNLSVILDEPKAHKSIRDMDFSLDSEFLATTSTDGSARIWKAEDGFPLSTLERSGDENIELCRFSKDGTKPFLFCAAQRGDTPMVNVYDISTWKKLGFKKLSR 254          
The following BLAST results are available for this feature:
BLAST of DY263908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
STLP2_ARATH5.785e-6741.03SEC12-like protein 2 OS=Arabidopsis thaliana GN=ST... [more]
PHF1_ARATH5.668e-2229.06SEC12-like protein 1 OS=Arabidopsis thaliana GN=PH... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA13AC10RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263908 ID=DY263908; Name=DY263908; organism=Citrus clementina; type=EST; length=1344bp
GAACTCAATGGGTAGCAGGAGCAGGAATGAAGAATCTCACAACTTGCAGA
AATACGGCGTGCCGTTGTACGGTGCCGGTTGGGTTCCGTACGATCAAGTC
ATCAGATCCACGCACAAGCCACCTAAACAACAAGACGATGACGACAAAGA
GGAAGACCAGCATGGATCCAAAGACGAAGCTGTCGCCGACAAATCCGACG
ATATTCGCCGCAACTACTACGTTGTTTTGGCCGGCGGTGGTGGTGCGGGC
AACAGCGGCATCCGCAACGCCGTCCTTTTGTCTCACTTCGATTTCGCCTC
CAATTCCCTCTCCGATCAGCCGGTGGCTGAGCTTCGAACTGATTCTGATT
TGCCTTATCGAATGGCTATTCACCCGCACGGTGATGGCATTATTTGTGCA
CTGCAAAATAGCTGCAGATTGTTTGAGTGGGATGAAGTGGAGAACACTGA
AATCCGTAGACTGGGTGTGAAAATTTCAGAGAAAGTGCTGTGCCAGTTAG
AAAATGTTGGACAACAGTTAGCACTAACGTTCGACTCTGAGGGTACTATA
TTTGCTGCTGGTAGTGAGAATGGCAATTTAAGGGTTTTCAAGTGGCCTAG
CCTGGAAATCATTCTGAATGAGTCTGAAGCCCATGCTTCTGTGAAGGATT
TGTCTTTCAGCCCTGATGGAAAATTCCTTGTCTCCTTGGGAAATCGTGGT
CCTGGTAGGGTTTGGGATCTAGCTTCTTCAGCCGTTACAACTCCTCTAGC
GAAGGAAAATGATGAACTTTTTGCTTCTTGTAGGTTCTCTCCACTAAATA
ATGAGGATTATGTTCTATACATTGCTGCAATAACAGACAGAGGTGCAAGT
ATTGTGACATGGAATACACCACTTNGGAAGAGAATCGCACAAAGCAAGTA
GTCGGTGAACCCGTTCTTCCTTCATGTTTCTGCGGATGCAAGCTCCTTGC
AGTGTATAACTTTTAGACTTCCTCGCTTCAACTGCTTGAAGACTCCAAAA
CTGTCAATAGAGCTTTGACTTCTCCACTGAATTGATGATGGATTGAAATG
CAATGGGACAGCTTCAGGAAACATTTTCATTAAAGATTCAACCAATCTGC
AGGGTTCAAAGGGAGTTTAAAAAACCCATTTGGGGAAAATGGACAGCTTT
GGCTTTTCCTAAGAAATTAAGGGGCTTTGGTTTTGCGTCCTTGGGGACCC
TAAGGGTTAAGGGGCAGGGGAGAATCCAGGAAAAAAAAAAAAAAAAGAAG
GGGGGGAGAAAAAAATTTTTGGGGTTTTTTTATCTCTTTTTCCTTTTTTT
TTTTCTGCGTGGTTGTGGGGCGGCGCGGCCCATTTTTTTTTTTT
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