DY264031

Overview
NameDY264031
Unique NameDY264031
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1300
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY264031 vs. ExPASy Swiss-Prot
Match: CTR9_HUMAN (RNA polymerase-associated protein CTR9 homolog OS=Homo sapiens GN=CTR9 PE=1 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 3.603e-42
Identity = 107/304 (35.20%), Postives = 160/304 (52.63%), Query Frame = 3
Query:    9 EVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWN--KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETF-RAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFY 911
            +VP E+LNN+G +HF  G    A + F         L  LD                        R + +  H E  +N   VT  +NLARL E + +   A  LY+ IL ++ +YVD YLRL A+A+ + N   + +   EAL++N  +P+A S++G+L L   +W   ++ F R     +   D+Y+ L+LGN  +   L    R  + E  H ++A  +Y +V+     NLYAANG G VLA KG F  ++D+F QV+EA +      + DVW+NLAH+Y  Q  +  A++MY+NCLRKFY
Sbjct:  448 DVPPEILNNVGALHFRLGNLGEAKKYF---------LASLD------------------------RAKAEAEHDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHPNYVDCYLRLGAMARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPSTQSDTYSMLALGN-VWLQTLHQPTRDREKEKRHQDRALAIYKQVLRNDAKNLYAANGIGAVLAHKGYFREARDVFAQVREATA-----DISDVWLNLAHIYVEQKQYISAVQMYENCLRKFY 712          
BLAST of DY264031 vs. ExPASy Swiss-Prot
Match: CTR9_MOUSE (RNA polymerase-associated protein CTR9 homolog OS=Mus musculus GN=Ctr9 PE=1 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 4.705e-42
Identity = 107/304 (35.20%), Postives = 159/304 (52.30%), Query Frame = 3
Query:    9 EVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWN--KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETF-RAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFY 911
            +VP E+LNN+G +HF  G    A + F         L  LD                        R + +  H E  +N   VT  +NLARL E + +   A  LY+ IL ++ +YVD YLRL A+A+ + N   + +   EAL++N  +P+A S++G+L L   +W   ++ F R         D+Y+ L+LGN  +   L    R  + E  H ++A  +Y +V+     NLYAANG G VLA KG F  ++D+F QV+EA +      + DVW+NLAH+Y  Q  +  A++MY+NCLRKFY
Sbjct:  448 DVPPEILNNVGALHFRLGNLGEAKKYF---------LASLD------------------------RAKAEAEHDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHPNYVDCYLRLGAMARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPATQSDTYSMLALGN-VWLQTLHQPTRDREKEKRHQDRALAIYKQVLRNDAKNLYAANGIGAVLAHKGYFREARDVFAQVREATA-----DISDVWLNLAHIYVEQKQYISAVQMYENCLRKFY 712          
BLAST of DY264031 vs. ExPASy Swiss-Prot
Match: CTR9_XENTR (RNA polymerase-associated protein CTR9 homolog OS=Xenopus tropicalis GN=ctr9 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 3.050e-41
Identity = 105/304 (34.54%), Postives = 160/304 (52.63%), Query Frame = 3
Query:    9 EVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWN--KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETF-RAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFY 911
            +VP E+LNN+G +HF  G    A + F         L  LD                        R + +  H E  +N   VT  +NLARL E + +   +  LY+ IL ++ +YVD YLRL A+A+ + N   + +   EAL++N  +P+A S++G+L L   +W   ++ F R     +   D+Y+ L+LGN  +   L    R  + E  H ++A  +Y +V+   + NLYAANG G VLA KG    ++D+F QV+EA +      + DVW+NLAH+Y  Q  +  A++MY+NCLRKFY
Sbjct:  448 DVPPEILNNVGALHFRLGNLGEAKKYF---------LASLD------------------------RAKAEAEHDEHYYNAISVTTTYNLARLYEGLCEFHESEKLYKNILREHPNYVDCYLRLGAMARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPSTQNDTYSMLALGN-VWLQTLHQPTRDREKEKRHQDRALAIYKQVLRNDSKNLYAANGIGAVLAHKGYVREARDVFAQVREATA-----DISDVWLNLAHIYVEQKQYISAVQMYENCLRKFY 712          
BLAST of DY264031 vs. ExPASy Swiss-Prot
Match: CTR9_XENLA (RNA polymerase-associated protein CTR9 homolog OS=Xenopus laevis GN=ctr9 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.159e-40
Identity = 103/304 (33.88%), Postives = 161/304 (52.96%), Query Frame = 3
Query:    9 EVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL--FNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETF-RAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFY 911
            +VP E+LNN+G +HF  G    A + F         L  LD                        R + +  H E  +N ++V   +NLARL E + +   +  LY+ IL ++ +YVD YLRL A+A+ + N   + +   EAL++N  +P+A S++G+L L   +W   ++ F R     +   D+Y+ L+LGN  +   L    R  + E  H ++A  +Y +V+   + NL+AANG G VLA KG    ++D+F QV+EA +      + DVW+NLAH+Y  Q  +  A++MY+NCLRKFY
Sbjct:  448 DVPPEILNNVGALHFRLGNLGEAKKYF---------LASLD------------------------RAKAEAEHDEHYYNSISVTTSYNLARLYEGLCEFHESEKLYKNILREHPNYVDCYLRLGAMARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPSTQNDTYSMLALGN-VWLQTLHQPTRDREKEKRHQDRALAIYKQVLRNDSKNLFAANGIGAVLAHKGYVREARDVFAQVREATA-----DISDVWLNLAHIYVEQKQYISAVQMYENCLRKFY 712          
BLAST of DY264031 vs. ExPASy Swiss-Prot
Match: YKD1_CAEEL (TPR repeat-containing protein B0464.2 OS=Caenorhabditis elegans GN=B0464.2 PE=2 SV=3)

HSP 1 Score: 128.257 bits (321), Expect = 1.018e-28
Identity = 85/299 (28.43%), Postives = 158/299 (52.84%), Query Frame = 3
Query:   21 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFR-AASDATDGK--DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 908
            E+LNN+G ++    ++E A   FK A         L+ +  T   D  + +L+        R   + +H+      +T+ +NLA  LE +  TV A  +Y+ I+ +   Y+D YLRL  I + R+ +  S   + + ++ +   P   +++G+L    ++W+ A++ F    S   + K  D Y+ ++LGN  +F  L N  R  + E  ++++A ++Y + +     N+YAANG G VLA K  ++ ++D+F+QV+E+ S     +  DVW+N+AHV   +  +  A++MY + ++KF
Sbjct:  472 EMLNNVGALYMSMKQYEKAEHHFKRAK------ERLEEQLNT---DEGSLLLE-------RRSAPEKSHL------LTIRYNLALCLEHLCRTVEAEQMYKDIVKECPGYIDGYLRLGCITRDRHQVYESSLWLKQGVQFDQASPIVWTLIGNLHFAKNEWMPAQKKFEFILSKIFNNKIPDPYSLVALGN-VWFEQLLNPSRKKEDEKKYIDRALQMYQKALKLQPKNMYAANGIGCVLAYKRNWNDARDVFSQVRESTS-----EFYDVWLNIAHVCMEREQWMAAVQMYSSAMKKF 742          
The following BLAST results are available for this feature:
BLAST of DY264031 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CTR9_HUMAN3.603e-4235.20RNA polymerase-associated protein CTR9 homolog OS=... [more]
CTR9_MOUSE4.705e-4235.20RNA polymerase-associated protein CTR9 homolog OS=... [more]
CTR9_XENTR3.050e-4134.54RNA polymerase-associated protein CTR9 homolog OS=... [more]
CTR9_XENLA1.159e-4033.88RNA polymerase-associated protein CTR9 homolog OS=... [more]
YKD1_CAEEL1.018e-2828.43TPR repeat-containing protein B0464.2 OS=Caenorhab... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA13BF06RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY264031 ID=DY264031; Name=DY264031; organism=Citrus clementina; type=EST; length=1300bp
CAGGTGAAGAAGTTCCAATAGAAGTTCTCAACAATATTGGAGTTATACAT
TTTGAAAAGGGAGAGTTTGAGTCAGCTCATCAAAGTTTCAAGGATGCTCT
AGGTGATGGCATATGGCTTACTTTGCTCGACAGCAAAACAAAAACCTATG
TTATTGATGCTAGTGCATCCATGCTTCAATTCAAGGATATGCAGTTATTT
CATCGATTTGAAAACGATGGTAATCATGTGGAACTACCATGGAATAAGGT
CACTGTGTTATTTAACCTGGCCAGATTACTCGAGCAGATACATGACACAG
TAGCTGCAAGCGTATTGTACCGCTTGATCTTGTTTAAGTATCAAGACTAC
GTAGATGCTTATCTAAGGCTTGCTGCTATTGCAAAAGCGAGGAACAATCT
TCAACTGAGCATTGAACTGGTCAATGAGGCTCTGAAGGTGAATGGCAAGT
ACCCGAATGCATTATCTATGCTTGGTGACTTGGAGCTTAAAAATGATGAC
TGGGTCAAGGCAAAAGAAACATTCCGAGCTGCCAGTGATGCAACTGATGG
GAAGGATTCTTATGCTACTCTCTCTCTGGGAAACTGGAACTACTTCGCCG
CCCTTCGTAACGAAAAGAGAGCCCCAAAGTTGGAAGCAACCCATTTGGAA
AAAGCGAAGGAACTCTACACGAGAGTTATTGTCCAGCATACATCTAATCT
CTATGCTGCCAATGGTGCTGGAGTGGTCTTGGCAGAAAAAGGCCAGTTTG
ATGTTTCAAAAGATCTTTTTACGCAGGTTCAAGAAGCTGCAAGTGGAAGT
GTCTTTGTCCAGATGCCAGATGTGTGGATAAATTTGGCGCATGTTTATTT
TGCTCAAGGAAATTTTGCTTTGGCTATGAAAATGTATCAAAATTGCTTGA
GGAAATTTTATTATAATTACGGACGCCCAAATTCTTCTCTATTTGGCCCG
AACTCATTAATAAACTGAACATTGCCAAGACTGCAGGAATCATTGCTGAA
AACGATCCCTTTGGCTCCTCCAATTCCCATTAAAATTGATGCAGGTGTTG
CTATGCAAAAATTTTCGGCATCCAACTAAAAAAAAAAAAAGGAAAGCTAA
AGAAGGGGGCTTCAACAATTGCAAAATTAAAAAATGCGTTTCGGGATTTT
ACTCATTTTTCGCCTCTTTCCACCCTTCTTCTTTTTGGGTTTTAAAAAAA
AAAAAATAAAACCCTCTGTTTAAAATTTTTAACACCATTTTTTTTTAGTG
TTGTAAAAAATTTCCCTCCCAGAAAAACCACGGAAAAGCCGGGGAGAAGA
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