DY264087

Overview
NameDY264087
Unique NameDY264087
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1368
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY264087 vs. ExPASy Swiss-Prot
Match: UAF30_SCHPO (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe GN=spp27 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 6.455e-13
Identity = 40/91 (43.96%), Postives = 55/91 (60.44%), Query Frame = 1 
Query:  526 KENPPVGAKRRGGP----GGLNKVCGVSPELQAVVGQPAMPRTEIVKQLWAYIRKNNLQDPSNKRKIICDDALRVVFETDCTDMFKMNKLL 786
            KE+   G KR+         LNK   +SP+L   +G   + R + VK+LW YI+ ++LQDP++KR I+CDD L+ VFE D   MF MNK L
Sbjct:   97 KEDGEEGGKRKRNQDPANNPLNKPMKLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSVFEVDTLHMFTMNKYL 187
[Close]
BLAST of DY264087 vs. ExPASy Swiss-Prot
Match: UAF30_YEAST (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae GN=UAF30 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 5.464e-12
Identity = 34/78 (43.59%), Postives = 58/78 (74.36%), Query Frame = 1 
Query:  592 VSPELQAVVGQPAMPRTEIVKQLWAYIRKNNLQDPSNKRKIICDDALRVVFETDCTDMFKMNKLLAKHIIPLEPTKES 825
            +S  L +++G+  + RTE+V++LWAYI+ +NLQ+P+NK++I+CD+ L ++     T+MF+M+K+LA H+   EP K S
Sbjct:  126 LSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLELILGKS-TNMFEMHKILASHM--TEPKKIS 200
[Close]
BLAST of DY264087 vs. ExPASy Swiss-Prot
Match: TRI1_YEAST (Protein TRI1 OS=Saccharomyces cerevisiae GN=TRI1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.136e-12
Identity = 40/100 (40.00%), Postives = 63/100 (63.00%), Query Frame = 1 
Query:  592 VSPELQAVVGQPAMPRTEIVKQLWAYIRKNNLQDPSNKRKIICDDALRVVFETDCTDMFKMNKLLAKHII-PLEPTK-ESSKRFKPDAESTTEGMESGPS 885
            +S  LQ  +G   +PRT++VK +W YI++++LQ+P ++R+I+CD+ +  +F    T MF MNKLL KH+  P E  K E  ++  P+ E   E  ES P+
Sbjct:  126 LSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRREILCDEKMEPIFGKKMT-MFSMNKLLTKHLFNPDEIVKHEEEQKQTPEKEIKLEN-ESLPN 223
The following BLAST results are available for this feature:
BLAST of DY264087 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
UAF30_SCHPO6.455e-1343.96Upstream activation factor subunit spp27 OS=Schizo... [more]
UAF30_YEAST5.464e-1243.59Upstream activation factor subunit UAF30 OS=Saccha... [more]
TRI1_YEAST7.136e-1240.00Protein TRI1 OS=Saccharomyces cerevisiae GN=TRI1 P... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA13CC07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY264087 ID=DY264087; Name=DY264087; organism=Citrus clementina; type=EST; length=1368bp
AGAAATTGAGAGAGAAGAGAAACGAGTGAGCAAAAGCAAAAGCACTATTC
ACTGACAATGGTATCGGACCAGGAGATAGCTAAAGGTGTCGAGACCCTGC
TCCGACAATCCGACCGGAACACTAGCACTTCGTTAAACGGTGTCGTAAAG
CAGCTGGAGGCAAAGCTTGGGCTAGATTTGTCTCACAAGGCCGGTTTCAT
CAGAGACCAGATCAGCCTTCTCCTCCGCTCGCACCCTACGCCTCAACAAG
TTGTAACAAACACCCAACCGCAACCGCAGCCGCAACCGCAACAACTTCCT
CCAAAAGACCATTTTACCCTCCAACATCATCCGCAATTTTCTTTACCGCC
ACAACAATTTTCTCCCCATTTTGCCCTCCACCACCCTCACCCCCACCTCC
CTCAGTTTCCTCAAGAACTGAACTTCAGCCAGCCCCAACCGTCGCAGGCT
GCGGCTCCTCCTCCTCAGCCGCATTCGAACGTCATTAAAGCTGAGGCCTT
CCCTCAAATTTCGGCTGAAGTAGCTAAAGAAAATCCTCCTGTTGGAGCCA
AAAGAAGAGGTGGCCCTGGGGGTTTGAACAAAGTTTGTGGTGTTTCACCT
GAACTTCAGGCTGTCGTTGGTCAACCAGCTATGCCAAGGACTGAGATTGT
GAAGCAGTTATGGGCATACATAAGGAAGAACAACCTCCAAGATCCAAGTA
ACAAGAGAAAGATAATTTGTGATGATGCCCTGCGTGTGGTTTTTGAGACA
GACTGCACCGACATGTTCAAGATGAACAAGCTACTAGCTAAACATATTAT
TCCACTTGAACCTACAAAGGAATCTTCTAAACGATTCAAGCCAGATGCTG
AGTCCACAACCGAAGGTATGGAATCTGGTCCATCTCCTGTAATCATATCT
GAAGCACTGGGCAAGTTTTTTGGGCACTGGGAGGAAGGGAGATGCTTCAA
GCAGAAGGCACAAAACGTGTCTGGGAGTACTTAAAAGTTTAACCATTTGG
AGGATCCTCCTAACTCCAGGGTAATATTAGGTGAAGCAAAGCTTCCCCAA
GCTTCTCGGATGCCAAACCATCTCTGCCTTGGGGAAACAGGAAAAGCTTG
GCCCCCATCTCCTTTTAAGGGAGTTCGGGATGTCGGGGAATGTTTAACGG
GGACGGGGGAAACTTTGGAAATGTGATCCATCTCGGAAGGGAAAAACCAA
AAAGGAAAAAACCTTGTTTCTTTTTTTTTTTTTGGTGGGCAATTGGACCG
CGCCTAAAATAACAACAAGGGCTGATAAATACTCTTTTGTTTTTTTTTGT
TGGTAATTTAAAAACAAAAAGAGATTATCCCACGCTGGGGGGCGCCCCCT
GGGGTGGGGAGAAGAAGA
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