DY264301

Overview
NameDY264301
Unique NameDY264301
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1212
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY264301 vs. ExPASy Swiss-Prot
Match: LARP7_HUMAN (La-related protein 7 OS=Homo sapiens GN=LARP7 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.817e-17
Identity = 58/190 (30.53%), Postives = 97/190 (51.05%), Query Frame = 1
Query:  334 GDQEPVYVISSPSVAMPSNTSKNVLTDDLRAKIIKQVEYQFSDMSLLANETLSKHMNKDPEGFVPLSVIGSMKKIKSLVGSNHLLAQALRSSSKLIVSNDGKKVRRKHPFTDKEREELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVE 903
            G+QE V    S          K      + A I KQV++ F D +L  +  L + + K  +G+V +S++ S  K+K L     L+A+ALRSS+ + +  +G ++RRK P  ++ ++E    TV  E LP++ +H  +E++FG  G+V  I I H   +   +            A VE+E+ + A KA+E
Sbjct:    6 GNQEKVMEEESTEKKKEVEKKKRSRVKQVLADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALRSSAVVELDLEGTRIRRKKPLGERPKDE-DERTVYVELLPKNVNHSWIERVFGKCGNVVYISIPHYKSTGDPKG----------FAFVEFETKEQAAKAIE 184          
BLAST of DY264301 vs. ExPASy Swiss-Prot
Match: LARP7_MOUSE (La-related protein 7 OS=Mus musculus GN=Larp7 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.071e-16
Identity = 52/160 (32.50%), Postives = 91/160 (56.88%), Query Frame = 1
Query:  424 AKIIKQVEYQFSDMSLLANETLSKHMNKDPEGFVPLSVIGSMKKIKSLVGSNHLLAQALRSSSKLIVSNDGKKVRRKHPFTDKEREELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVE 903
            A I KQV++ F D +L  ++ L + + K  +G+V +S++ S  K+K L     L+A+AL+SSS + +  +G ++RRK P  ++ ++E +  TV  E LP++ +H  +E++FG  G+V  I I H   +   +            A VE+E+ + A KA+E
Sbjct:   30 ADIAKQVDFWFGDANLHKDKFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALKSSSVVELDLEGTRIRRKKPLGERPKDE-EERTVYVELLPKNVTHSWIERVFGKCGNVVYISIPHYKSTGDPKG----------FAFVEFETKEQAAKAIE 178          
BLAST of DY264301 vs. ExPASy Swiss-Prot
Match: LARP7_MACFA (La-related protein 7 OS=Macaca fascicularis GN=LARP7 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.071e-16
Identity = 57/190 (30.00%), Postives = 97/190 (51.05%), Query Frame = 1
Query:  334 GDQEPVYVISSPSVAMPSNTSKNVLTDDLRAKIIKQVEYQFSDMSLLANETLSKHMNKDPEGFVPLSVIGSMKKIKSLVGSNHLLAQALRSSSKLIVSNDGKKVRRKHPFTDKEREELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVE 903
            G+Q+ V    S          K      + A I KQV++ F D +L  +  L + + K  +G+V +S++ S  K+K L     L+A+ALRSS+ + +  +G ++RRK P  ++ ++E    TV  E LP++ +H  +E++FG  G+V  I I H   +   +            A VE+E+ + A KA+E
Sbjct:    6 GNQKNVMEEESTEKKKEVEKKKRSRVKQVLADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALRSSAVVELDLEGTRIRRKKPLGERPKDE-DERTVYVELLPKNVNHSWIERVFGKCGNVVYISIPHYKSTGDPKG----------FAFVEFETKEQAAKAIE 184          
BLAST of DY264301 vs. ExPASy Swiss-Prot
Match: LARP7_RAT (La-related protein 7 OS=Rattus norvegicus GN=Larp7 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 1.398e-16
Identity = 52/160 (32.50%), Postives = 90/160 (56.25%), Query Frame = 1
Query:  424 AKIIKQVEYQFSDMSLLANETLSKHMNKDPEGFVPLSVIGSMKKIKSLVGSNHLLAQALRSSSKLIVSNDGKKVRRKHPFTDKEREELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVE 903
            A I KQV++ F D +L  +  L + + K  +G+V +S++ S  K+K L     L+A+AL+SSS + +  +G ++RRK P  ++ ++E +  TV  E LP++ +H  +E++FG  G+V  I I H   +   +            A VE+E+ + A KA+E
Sbjct:   31 ADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALKSSSVVELDLEGTRIRRKKPLGERPKDE-EERTVYVELLPKNVTHSWIERVFGKCGNVVYISIPHYKSTGDPKG----------FAFVEFETKEQAAKAIE 179          
BLAST of DY264301 vs. ExPASy Swiss-Prot
Match: LARP7_XENTR (La-related protein 7 OS=Xenopus tropicalis GN=larp7 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 9.063e-16
Identity = 50/162 (30.86%), Postives = 93/162 (57.41%), Query Frame = 1
Query:  418 LRAKIIKQVEYQFSDMSLLANETLSKHMNKDPEGFVPLSVIGSMKKIKSLVGSNHLLAQALRSSSKLIVSNDGKKVRRKHPFTDKEREELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVE 903
            L A I KQV++ F D++L  +  L + + K  +G++ +S++ S  K+K +   + L+A+A+++SS + ++  G K+RR+ P  +K  +++ S TV  E LP++ +H  +E++FG  G V  + I   P   S+     F       A +E+E+ + A KA+E
Sbjct:   36 LLADIAKQVDFWFGDVNLHKDRFLREQIEKTRDGYIDISLLASFNKMKKITTDSKLIARAVKNSSVVEINLSGTKIRRRFPLGEKP-QDVDSRTVYVELLPKNVTHSWIERVFGKYGMVVYVSI---PRYKSTGDPKGF-------AFIEFETQEQAAKAIE 186          
BLAST of DY264301 vs. ExPASy Swiss-Prot
Match: LARP7_DANRE (La-related protein 7 OS=Danio rerio GN=larp7 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.232e-14
Identity = 50/162 (30.86%), Postives = 93/162 (57.41%), Query Frame = 1
Query:  418 LRAKIIKQVEYQFSDMSLLANETLSKHMNKDPEGFVPLSVIGSMKKIKSLVGSNHLLAQALRSSSKLIVSNDGKKVRRKHPFTDKEREELQSCTVVAENLPEDHSHQNLEKIFGVVGSVKTIRICHPPESNSSRAKSDFFVSNKLHALVEYESTDIAEKAVE 903
            L + + KQVE+ F D++L  +  +   + +  +G++ ++V+ +  ++K+L     L+A+AL++S+ + V+++G ++RRK P  +  + ++ S TV  E LP+  +H  LE++F   G V  I I   P   S+R    F       A VE+E+ + A+KAVE
Sbjct:   42 LLSDVKKQVEFWFGDVNLHKDRFMKSIIEQSRDGYIDIAVLTTFNRMKNLTADVKLIARALKNSTIVEVNDEGTRIRRKEPLGETPK-DVDSRTVYVELLPKTVTHIWLERVFSKCGHVVYISI---PRYKSTRHSKGF-------AFVEFETQEQAQKAVE 192          
BLAST of DY264301 vs. ExPASy Swiss-Prot
Match: LARP6_MOUSE (La-related protein 6 OS=Mus musculus GN=Larp6 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.310e-11
Identity = 61/224 (27.23%), Postives = 104/224 (46.43%), Query Frame = 1
Query:  313 SADWIFVGDQEPVYVISSPSVAMPSNTSKNVLTD------DLRAKIIKQVEYQFSDMSLLANETLSKHMNKDPEGFVPLSVIGSMKKIKSLVGSNHLLAQALRSSSKLIVSNDGKKVRRKHPFTDKEREELQSCTVVAENL-----------PEDHSH------QNLEKIFGVVGSVKTIRICHPPES---NSSRAKSDFF-VSNKLHALVEYESTDIAEKAVE 903
            S  W    ++EP    SS + +   N  +++  +      +L  K++ Q+E+ FSD +L  +  L KH+ ++  G+V + ++ S KK+K L       A AL+ S  L ++ D +KVRR  P      E L S  ++  +L           P+ +        ++L K+FG  G + ++RI  P      +  R  S +  V  +  A+VE+E  D A KA E
Sbjct:   51 SPGWGSASEEEPSRGHSSATTSGGENDREDLEPEWRPPDEELIRKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDWRTTAHALKYSVTLELNEDHRKVRRTTPVPLFPNENLPSKMLLVYDLHLSPKLWALATPQKNGRVQEKVMEHLLKLFGTFGVISSVRILKPGRELPPDIRRISSRYSQVGTQECAIVEFEEVDAAIKAHE 274          
The following BLAST results are available for this feature:
BLAST of DY264301 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
LARP7_HUMAN2.817e-1730.53La-related protein 7 OS=Homo sapiens GN=LARP7 PE=1... [more]
LARP7_MOUSE1.071e-1632.50La-related protein 7 OS=Mus musculus GN=Larp7 PE=1... [more]
LARP7_MACFA1.071e-1630.00La-related protein 7 OS=Macaca fascicularis GN=LAR... [more]
LARP7_RAT1.398e-1632.50La-related protein 7 OS=Rattus norvegicus GN=Larp7... [more]
LARP7_XENTR9.063e-1630.86La-related protein 7 OS=Xenopus tropicalis GN=larp... [more]
LARP7_DANRE2.232e-1430.86La-related protein 7 OS=Danio rerio GN=larp7 PE=2 ... [more]
LARP6_MOUSE2.310e-1127.23La-related protein 6 OS=Mus musculus GN=Larp6 PE=1... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA14AF12RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY264301 ID=DY264301; Name=DY264301; organism=Citrus clementina; type=EST; length=1212bp
AAAACGGGAAGAAAAAAAAAAAGAAAAAGGCACCAAACAAAACAAGAAAC
AAAAATACTAATGGCACAAGCACATGCTGAGAAGATTGAAGAAGACATTG
TTAATAATCAAGAGAAAGAGATAATGAAAATCAACAACAACACAACATCA
AATAATAATAATGGAAATATTAGTACCAGTAGCAGCAGTGCTAGTGCGCC
TTTCAAATTCAATGTGCAGGCACCTGAATTTGTGCCAAGATCACATACTC
AGATGCCTATTTCCGGGTACTACTATCCTTGTTTTCAGTACATTGGTGGT
ACGGCTACTGGGTCTGCTGATTGGATCTTTGTTGGCGATCAAGAACCTGT
GTATGTGATCTCAAGCCCTAGCGTCGCAATGCCCAGTAATACCTCCAAGA
ATGTCCTCACTGATGATCTTAGGGCAAAGATCATCAAACAGGTGGAATAT
CAGTTCAGTGACATGAGTCTTCTTGCAAATGAAACTTTGTCAAAGCATAT
GAATAAAGATCCCGAAGGTTTTGTCCCCTTATCTGTTATCGGTTCCATGA
AGAAAATTAAGTCTCTTGTTGGTAGCAACCATTTGCTTGCTCAAGCACTC
CGGTCCTCTTCAAAGCTTATTGTAAGCAATGATGGCAAGAAGGTTAGGCG
TAAACACCCTTTCACTGATAAAGAAAGAGAGGAATTACAGTCTTGCACTG
TTGTAGCAGAGAATTTACCTGAGGATCACTCTCATCAAAACTTGGAGAAA
ATATTTGGTGTAGTGGGAAGTGTGAAAACTATCCGAATATGCCATCCGCC
TGAATCTAATTCATCTCGTGCTAAGAGTGATTTCTTTGTGAGCAACAAGC
TGCATGCACTTGTGGAGTATGAGAGTACTGATATCGCTGAGAAAGCGGTT
GAAAAGTAAATGATGAAAGAACTGGAGGAAAGGGCTCGAGTAGGGTGCTG
CTCAGATGCTCGCCAAATCTGTTCTCAGAACAAGAAAGTAGAATTGGAAG
GCTTTTAGATGATGAGGAGGCTGATGCCTCTGAAGATCCTCTCACCCAAA
CAACAAAAAATCATTTGCTGAAAAAAACAAGGTTAAAAAAACTTAGGGGG
GTTCAAAAAGGGGATGGGCCATAGGGCCGGGGGAGGGGGGGGGGAAGGGC
CTAAAACCCCAAACACCCCCCCCCGGTTTTCCCCCCCCCCCCACTAAAAC
AAGGGAACTCAA
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