DY264347

Overview
NameDY264347
Unique NameDY264347
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1215
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY264347 vs. ExPASy Swiss-Prot
Match: CCD4_ARATH (Probable carotenoid cleavage dioxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=CCD4 PE=1 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 4.142e-69
Identity = 133/220 (60.45%), Postives = 156/220 (70.91%), Query Frame = 3
Query:  267 NTLNKLIKPKLQAQPLSLDPSRAFSNNLAPV-DELHPTQCQVTQGSLPSCLEGAYIRNGPNPQYPPRSEPYSPFDGDGMLHCIKISQGQATFCSRYVKTYKYTIENTVGSPIVPRPFSSFSGPLAFLTRAGVLAARVLTGQLSINSGFGLANTSLAFLGNRLLALYEGDLPYAVRLTSNGDIETLGRCDLDGKLVMNMTAHPKKDPETGEMFAFRYXSMP 923
            + +N  I P  +    S+DP    S+N APV DEL PT C++  G+LP  L GAYIRNGPNPQ+ PR  PY  FDGDGMLH IKI  G+AT CSRYVKTYKY +E   G+P++P  FS F+G  A + R  + AARVLTGQ +  +G GLANTSLAF  NRL AL E DLPYAVRLT +GDIET+GR D DGKL M+MTAHPK DP TGE FAFRY  +P
Sbjct:   91 DVINTFIDPPSRP---SVDPKHVLSDNFAPVLDELPPTDCEIIHGTLPLSLNGAYIRNGPNPQFLPRG-PYHLFDGDGMLHAIKIHNGKATLCSRYVKTYKYNVEKQTGAPVMPNVFSGFNGVTASVARGALTAARVLTGQYNPVNGIGLANTSLAFFSNRLFALGESDLPYAVRLTESGDIETIGRYDFDGKLAMSMTAHPKTDPITGETFAFRYGPVP 306          
BLAST of DY264347 vs. ExPASy Swiss-Prot
Match: NCED5_ARATH (Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic OS=Arabidopsis thaliana GN=NCED5 PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.063e-40
Identity = 87/201 (43.28%), Postives = 118/201 (58.71%), Query Frame = 3
Query:  309 PLSLDPSRAFSNNLAPVDELHPTQCQVTQGSLPSCLEGAYIRNGPNPQYPPRSEPYSPFDGDGMLHCIKISQGQATFCSRYVKTYKYTIENTVGSPIVPRPFSSFSGPLAFLTRAGVLAARVLTGQLSINSGFGLANTSLAFLGNRLLALYEGDLPYAVRLTSNGDIETLGRCDLDGKLVMNMTAHPKKDPETGEMFAFRY 911
            P ++DP    S N APV E          G +P C++G Y+RNG NP + P S  +  FDGDGM+H +KI+ G A++  R+ +T +   E  +GSPI P+      G    + R  +  AR L G L+  +G G+AN  L +  +RLLA+ E DLPY VR+T NGD+ET+GR D DG+L   M AHPK DP T E+FA  Y
Sbjct:  104 PKTVDPRHQISGNYAPVPEQSVKSSLSVDGKIPDCIDGVYLRNGANPLFEPVSGHHL-FDGDGMVHAVKITNGDASYSCRFTETERLVQEKQLGSPIFPKAIGELHGHSG-IARLMLFYARGLFGLLNHKNGTGVANAGLVYFHDRLLAMSEDDLPYQVRVTDNGDLETIGRFDFDGQLSSAMIAHPKIDPVTKELFALSY 302          
BLAST of DY264347 vs. ExPASy Swiss-Prot
Match: NCED3_ARATH (9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic OS=Arabidopsis thaliana GN=NCED3 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.300e-38
Identity = 82/206 (39.81%), Postives = 117/206 (56.80%), Query Frame = 3
Query:  294 KLQAQPLSLDPSRAFSNNLAPVDELHPTQCQVTQGSLPSCLEGAYIRNGPNPQYPPRSEPYSPFDGDGMLHCIKISQGQATFCSRYVKTYKYTIENTVGSPIVPRPFSSFSGPLAFLTRAGVLAARVLTGQLSINSGFGLANTSLAFLGNRLLALYEGDLPYAVRLTSNGDIETLGRCDLDGKLVMNMTAHPKKDPETGEMFAFRY 911
            KL   P + DPS   + N APV+E    +     G LP  ++G Y+RNG NP + P +  +  FDGDGM+H +K   G A++  R+ +T ++  E  +G P+ P+      G    + R  +  AR   G +    G G+AN  L +   RLLA+ E DLPY V++T NGD++T+GR D DG+L   M AHPK DPE+GE+FA  Y
Sbjct:  109 KLHPLPKTADPSVQIAGNFAPVNEQPVRRNLPVVGKLPDSIKGVYVRNGANPLHEPVTGHHF-FDGDGMVHAVKFEHGSASYACRFTQTNRFVQERQLGRPVFPKAIGELHGHTG-IARLMLFYARAAAGIVDPAHGTGVANAGLVYFNGRLLAMSEDDLPYQVQITPNGDLKTVGRFDFDGQLESTMIAHPKVDPESGELFALSY 312          
BLAST of DY264347 vs. ExPASy Swiss-Prot
Match: NCED2_ARATH (9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic OS=Arabidopsis thaliana GN=NCED2 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.697e-38
Identity = 79/201 (39.30%), Postives = 117/201 (58.21%), Query Frame = 3
Query:  309 PLSLDPSRAFSNNLAPVDELHPTQCQVTQGSLPSCLEGAYIRNGPNPQYPPRSEPYSPFDGDGMLHCIKISQGQATFCSRYVKTYKYTIENTVGSPIVPRPFSSFSGPLAFLTRAGVLAARVLTGQLSINSGFGLANTSLAFLGNRLLALYEGDLPYAVRLTSNGDIETLGRCDLDGKLVMNMTAHPKKDPETGEMFAFRY 911
            P + DP    + N +PV E    +    +G++P C++G YIRNG NP + P +  +  FDGDGM+H +KI+ G A++  R+ KT +   E  +G P+ P+      G    + R  +  AR L G ++  +G G+AN  L +  NRLLA+ E DLPY +++T  GD++T+GR D DG+L   M AHPK DP T E+ A  Y
Sbjct:   97 PKTADPRVQIAGNYSPVPESSVRRNLTVEGTIPDCIDGVYIRNGANPMFEPTAGHHL-FDGDGMVHAVKITNGSASYACRFTKTERLVQEKRLGRPVFPKAIGELHGHSG-IARLMLFYARGLCGLINNQNGVGVANAGLVYFNNRLLAMSEDDLPYQLKITQTGDLQTVGRYDFDGQLKSAMIAHPKLDPVTKELHALSY 295          
BLAST of DY264347 vs. ExPASy Swiss-Prot
Match: NCED1_PHAVU (9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic OS=Phaseolus vulgaris GN=NCED1 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 4.181e-37
Identity = 79/201 (39.30%), Postives = 113/201 (56.22%), Query Frame = 3
Query:  309 PLSLDPSRAFSNNLAPVDELHPTQCQVTQGSLPSCLEGAYIRNGPNPQYPPRSEPYSPFDGDGMLHCIKISQGQATFCSRYVKTYKYTIENTVGSPIVPRPFSSFSGPLAFLTRAGVLAARVLTGQLSINSGFGLANTSLAFLGNRLLALYEGDLPYAVRLTSNGDIETLGRCDLDGKLVMNMTAHPKKDPETGEMFAFRY 911
            P + DP    + N APV E    Q     G +P C++G Y+RNG NP Y P +  +  FDGDGM+H +K + G A++  R+ +T +   E ++G P+ P+      G    + R  +  AR L   +  + G G+AN  L +  N LLA+ E DLPY VR+TSNGD+ T+GR D +G+L   M AHPK DP  G++ A  Y
Sbjct:  133 PKTADPKVQIAGNFAPVPEHAADQALPVVGKIPKCIDGVYVRNGANPLYEPVAGHHF-FDGDGMVHAVKFTNGAASYACRFTETQRLAQEKSLGRPVFPKAIGELHGHSG-IARLLLFYARSLFQLVDGSHGMGVANAGLVYFNNHLLAMSEDDLPYHVRITSNGDLTTVGRYDFNGQLNSTMIAHPKLDPVNGDLHALSY 331          
BLAST of DY264347 vs. ExPASy Swiss-Prot
Match: NCED9_ARATH (9-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic OS=Arabidopsis thaliana GN=NCED9 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 2.294e-35
Identity = 76/201 (37.81%), Postives = 108/201 (53.73%), Query Frame = 3
Query:  309 PLSLDPSRAFSNNLAPVDELHPTQCQVTQGSLPSCLEGAYIRNGPNPQYPPRSEPYSPFDGDGMLHCIKISQGQATFCSRYVKTYKYTIENTVGSPIVPRPFSSFSGPLAFLTRAGVLAARVLTGQLSINSGFGLANTSLAFLGNRLLALYEGDLPYAVRLTSNGDIETLGRCDLDGKLVMNMTAHPKKDPETGEMFAFRY 911
            P + DP+   + N  PV E          G++P C++G Y+RNG NP + P S  +  FDGDGM+H ++   G  ++  R+ +T +   E   G P+ P+      G L  + +  +   R L G +    G G+AN  L +    LLA+ E DLPY V++T  GD+ET GR D DG+L   M AHPK DPET E+FA  Y
Sbjct:  174 PKTADPAVQIAGNFFPVPEKPVVHNLPVTGTVPECIQGVYVRNGANPLHKPVSGHHL-FDGDGMVHAVRFDNGSVSYACRFTETNRLVQERECGRPVFPKAIGELHGHLG-IAKLMLFNTRGLFGLVDPTGGLGVANAGLVYFNGHLLAMSEDDLPYHVKVTQTGDLETSGRYDFDGQLKSTMIAHPKIDPETRELFALSY 372          
BLAST of DY264347 vs. ExPASy Swiss-Prot
Match: NCED1_MAIZE (9-cis-epoxycarotenoid dioxygenase 1, chloroplastic OS=Zea mays GN=VP14 PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 8.718e-35
Identity = 78/202 (38.61%), Postives = 112/202 (55.45%), Query Frame = 3
Query:  309 PLSLDPSRAFSNNLAPVDELHPTQCQVTQGSLPSCLEGAYIRNGPNPQYPPRSEPYSPFDGDGMLHCIKISQGQA-TFCSRYVKTYKYTIENTVGSPIVPRPFSSFSGPLAFLTRAGVLAARVLTGQLSINSGFGLANTSLAFLGNRLLALYEGDLPYAVRLTSNGDIETLGRCDLDGKLVMNMTAHPKKDPETGEMFAFRY 911
            P + DP+   + N APV E  P       G +P  ++G Y RNG NP + P +  +  FDGDGM+H ++I  G A ++  R+ +T +   E  +G P+ P+      G    + R  +  AR   G +  ++G G+AN  L +   RLLA+ E DLPY VR+  +GD+ET+GR D DG+L   M AHPK DP TGE+ A  Y
Sbjct:  114 PSTADPAVQIAGNFAPVGERPPVHELPVSGRIPPFIDGVYARNGANPCFDPVAGHHL-FDGDGMVHALRIRNGAAESYACRFTETARLRQERAIGRPVFPKAIGELHGHSG-IARLALFYARAACGLVDPSAGTGVANAGLVYFNGRLLAMSEDDLPYHVRVADDGDLETVGRYDFDGQLGCAMIAHPKLDPATGELHALSY 313          
BLAST of DY264347 vs. ExPASy Swiss-Prot
Match: NCED6_ARATH (9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic OS=Arabidopsis thaliana GN=NCED6 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.139e-34
Identity = 80/215 (37.21%), Postives = 114/215 (53.02%), Query Frame = 3
Query:  276 NKLIKPKLQAQPLS--LDPSRAFSNNLAPVDELHPTQCQVTQGSLPSCLEGAYIRNGPNPQYPPRSEPYSPFDGDGMLHCIKIS-QGQATFCSRYVKTYKYTIENTVGSPIVPRPFSSFSGPLAFLTRAGVLAARVLTGQLSINSGFGLANTSLAFLGNRLLALYEGDLPYAVRLTSNGDIETLGRCDLDGKLVMNMTAHPKKDPETGEMFAFRY 911
            + ++ P  Q +PL    DP+   S N APV+E          G +PSCL+G YIRNG NP +PP +  +  FDGDGM+H + I    Q ++  RY KT +   E  +G  + P+P     G    L R  +  AR   G +    G G+AN  + F   RLLA+ E DLPY V++   GD+ET+GR   D ++  ++ AHPK D  TG++    Y
Sbjct:   79 SSIVIPMEQNRPLPKPTDPAVQLSGNFAPVNECPVQNGLEVVGQIPSCLKGVYIRNGANPMFPPLAGHHL-FDGDGMIHAVSIGFDNQVSYSCRYTKTNRLVQETALGRSVFPKPIGELHGHSG-LARLALFTARAGIGLVDGTRGMGVANAGVVFFNGRLLAMSEDDLPYQVKIDGQGDLETIGRFGFDDQIDSSVIAHPKVDATTGDLHTLSY 291          
BLAST of DY264347 vs. ExPASy Swiss-Prot
Match: CCD1_PEA (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Pisum sativum GN=CCD1 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 3.313e-34
Identity = 85/198 (42.93%), Postives = 114/198 (57.58%), Query Frame = 3
Query:  324 PSRAFSNNLAPV-DELHPTQCQVTQGSLPSCLEGAYIRNGPNPQYPPRSEPYSPFDGDGMLHCIKISQGQATFCSRYVKTYKYTIENTV-GSPIVPRPFSSFSGPLAFLTRAGVLAARVLTGQLSINSGFGLANTSLAFLGNRLLALYEGDLPYAVRLTSNGDIETLGRCDLDGKLVMNMTAHPKKDPETGEMFAFRY 911
            P    S N APV DE  P +    QG LP CL G ++R GPNP++ P +  Y  FDGDGM+H ++I  G+A++ SR+VKT ++  E    GS  +        G L  L    +   R     L ++ G G ANT+L +   +LLAL EGD PYA+++  +GD++TLG  D D +L  N TAHPK DP TGEMF F Y
Sbjct:   44 PHHWLSGNFAPVKDETPPVKDLTVQGHLPDCLNGEFVRVGPNPKFSPVAG-YHWFDGDGMIHGLRIKDGKASYVSRFVKTSRFKQEEYFNGSKFMK--IGDLKG-LFGLLMVNMQMLRAKLKILDVSYGHGTANTALVYHHQKLLALSEGDKPYAIKVFEDGDLQTLGMLDYDKRLGHNFTAHPKVDPFTGEMFTFGY 237          
BLAST of DY264347 vs. ExPASy Swiss-Prot
Match: CCD1_PHAVU (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Phaseolus vulgaris GN=CCD1 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 3.663e-33
Identity = 84/221 (38.01%), Postives = 120/221 (54.30%), Query Frame = 3
Query:  261 ILNTLNKLIKPKLQAQPLSLDPSRAFSNNLAPVDELHPTQCQVTQGSLPSCLEGAYIRNGPNPQYPPRSEPYSPFDGDGMLHCIKISQGQATFCSRYVKTYKYTIENTVGSPIVPRPFSSFSGPLAFLTRAGVLAARVLTGQLSINSGFGLANTSLAFLGNRLLALYEGDLPYAVRLTSNGDIETLGRCDLDGKLVMNMTAHPKKDPETGEMFAFRYXSMP 923
            +++ L KL+   L    L   P    + N  PV E  PT+    +G LP CL G ++R GPNP++ P +  Y  FDGDGM+H ++I  G+AT+ SR+V+T +   E   G     +      G L  L    +   R     L ++ G G  NT+L +   +LLAL E D PYA+++  +GD++TLG  D D +L  + TAHPK DP TGEMF+F Y   P
Sbjct:   29 VIDLLEKLLVKFLYDSSL---PHHYLTGNFGPVTETPPTKDLPVKGHLPDCLNGEFVRVGPNPKFAPVAG-YHWFDGDGMIHGLRIKDGKATYVSRFVETSRLKQEEYFGRSKFMK-IGDLKG-LFGLLMVNIHMLRTKLKVLDLSYGGGTTNTALVYHHGKLLALSEADKPYAIKVFEDGDLQTLGMLDYDKRLGHSFTAHPKVDPFTGEMFSFGYAHTP 243          
The following BLAST results are available for this feature:
BLAST of DY264347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
CCD4_ARATH4.142e-6960.45Probable carotenoid cleavage dioxygenase 4, chloro... [more]
NCED5_ARATH1.063e-4043.28Probable 9-cis-epoxycarotenoid dioxygenase NCED5, ... [more]
NCED3_ARATH1.300e-3839.819-cis-epoxycarotenoid dioxygenase NCED3, chloropla... [more]
NCED2_ARATH1.697e-3839.309-cis-epoxycarotenoid dioxygenase NCED2, chloropla... [more]
NCED1_PHAVU4.181e-3739.309-cis-epoxycarotenoid dioxygenase NCED1, chloropla... [more]
NCED9_ARATH2.294e-3537.819-cis-epoxycarotenoid dioxygenase NCED9, chloropla... [more]
NCED1_MAIZE8.718e-3538.619-cis-epoxycarotenoid dioxygenase 1, chloroplastic... [more]
NCED6_ARATH1.139e-3437.219-cis-epoxycarotenoid dioxygenase NCED6, chloropla... [more]
CCD1_PEA3.313e-3442.93Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
CCD1_PHAVU3.663e-3338.01Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA14BB11RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY264347 ID=DY264347; Name=DY264347; organism=Citrus clementina; type=EST; length=1215bp
TAGCCATGGATGCCTTGTCTTCCTCCTTCATGTCAACATTACCACCTCAA
ATACAGCGGCTCCACTACTCTCCAACCAAAACAAAAGCACCACTGTTGTT
ACCATCATCATCATCTTCATCGCGAACCAATAATGTGATAGTTTCAACAA
CACCACCACCCAAAAAACCTGAAACCACAGAAGAAAATAACAAACAGCAA
ACAAAGACGACGCAGAAACCATCATCATCAGTATCAACAACAACAAACGT
AAGTGCAGTGATACTTAATACACTCAACAAATTGATAAAACCTAAACTCC
AGGCGCAACCACTGTCTCTCGACCCAAGTCGTGCATTTTCCAATAACTTA
GCTCCTGTCGATGAGCTTCATCCAACACAATGCCAGGTAACACAAGGGTC
TCTCCCGTCCTGCTTAGAGGGTGCATACATTCGCAATGGCCCTAACCCTC
AATACCCTCCTCGTTCAGAGCCTTATAGTCCCTTCGACGGCGATGGCATG
CTGCACTGCATTAAAATCTCACAAGGCCAGGCCACCTTCTGTAGCCGCTA
TGTCAAAACTTATAAATACACCATTGAAAACACAGTTGGTTCTCCCATTG
TTCCGCGTCCCTTCTCTAGCTTCAGTGGCCCTCTTGCGTTTTTAACAAGA
GCTGGTGTCTTAGCAGCTCGTGTGCTCACAGGTCAACTTAGTATTAACAG
CGGATTTGGTCTAGCGAACACCAGTTTAGCTTTCTTGGGAAACCGTTTGC
TTGCACTTTATGAAGGTGATCTCCCCTATGCTGTGCGCTTGACGTCTAAT
GGTGATATTGAAACTTTGGGTCGTTGTGATTTGGATGGAAAGTTAGTGAT
GAACATGACTGCCCATCCCAAGAAAGACCCCGAAACAGGCGAAATGTTTG
CTTTTCGTTATNAGTCCATGCCNTCCGTTTGTGACCTACTTTCTGGTTTG
ATGCTAACGGGAGAGAACAACCTGACGTGCACAATAAAATGCCAGGGTCA
ATGGCTTCGTCAACCTCCCTTTAATGCATGACTTTTGCAATAACAAAGAG
AATACGCTAAATTTGTCCAACCCACAATTGCAGGCCTAAGGGAATGAAAT
TGATTCTTTCAACGGGAACCTTCGGCCCCCTTTCGAATTCAAAAAAAGGG
GTTAAGGGAATGGGGGGTTATGCCCCCCAAAATAAAAAAAAATTTTCTCC
CAAAAAAGAAAAGGG
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